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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046090 ID=TCONS_00046090|Name=TCONS_00046090|organism=Clytia hemisphaerica|type=transcript|length=1781bp
TGATtattctaaaaaagcgatgcattgtgggattgttatggtattacaaa
gaaaaagaaaagacccAAGCACCCCTGTCCCTTTGGTTGCAAAAAGCTTC
AAAGTGTTTTAAGTCGTCATCTGAAGTTAATACACAAGGATGAGCCGGCA
ATCATAGAGAtcttatcaaaacctaaagagCTGCATAACAAATGCTTTGA
TAACCTTAAGAAAGAAGGGATTTTTAAGTACAATCAACAAGAAATGATCC
ATGAGAGAGAGAGTACCAAAAATCTCTGCCACGAATGTTAACAACATAGT
TATCTGCTCCGAATGTAAGGGAACCTATTCAAAAGGGTTCAAATCCCGCC
ATCAAATCGAATGCGGAAAAACAGGGGGTCGAATAATGATTCCTATGGTC
CCTGTGAAAGATATGGTTATCACGGAATACCCGCCTGAATTCAAAGAGGT
AATCAACAAGATGAAAATAGATGAAATCTCTTCACTCGCCAAAACAGACC
CCTTTATTCTTGTTGTTGGTGCCCGTATTTTCAACGGGAATAAATGCAAG
GAAGAGAAGATACAGGAAGTGAACCGACGGGTCCGTTCTTCAATGCGGCT
CTTGAGCCGTCTTCTCCTCAAATTCAACGAATCTTTTGGAAGTGAAAAAA
CTTTATCTTCGTTGTTCGACAGAGAAAACCTTAAACATTTAAGATTTGCT
ATAGACGctctttcagaaaatgaagACGAGGTAAAAGCTGGATTAAAAGT
TCAAATCCAAAACGTCATCAAGTTAGCTGCAAAGACTCTTGAAGCTCACT
TTTTGGTCGAAGCAAAGAAAGAACTTTCGGAAATGGTTTGTGAGTTCATG
AAAGTGTTTCACCTCGTGGAAGATGAGCTTTTCAATGGAGCGCTTTATAA
GATTAAGCAAAAAAGGAACAAATCAACCCGGAAGCCAGGAAATTTACCGG
ATGAAGAAATTGTACAAGATTTGAAGTCAtatcttcttggaataatacGG
AAAGATCAATTTATTTTCAANGAAGTGAAAAAACTTTATCTTCGTTGTTC
GACAgagaaaacctttaacatttaTTTAAGATTTGCTATAGACGctcttt
cagaaaatgaagACGAGGTAAAAGCTGGATTAAAAGTTCAAATCCAAAAC
GTCATCAAGTTAGCTGCAAAGACTCTTGAAGCTCACTTTTTGGTCGAAGC
AAAGAAAGAACTTTCGGAAATGGTTTGTGAGTTCATGAAAGTGTTTCACC
TCGTGGAAGATGAGCTTTTCAATGGAGCGCTTTATAAGATTAAGCAAAAA
AGGAACAAATCAACCCGGAAGCCAGGAAATTTACCGGATGAAGAAATTGT
ACAAGATTTGAAGTCAtatcttcttggaataatacGGAAAGATCAATTTA
TTTTCAANAAAAAAGGAACAAATCAACCCGGAAGCCAGGAAATTTACCGG
ATGAAGAAATTGTACAAGATTTGAAGTCAtatcttcttggaataatacGA
AAAgatcaatttattttcaaacaacCAAGTGAAGTATACGTGAACGTTAG
AGACGCTGCCTGCGTTAGGTTGACCATTTTTAATGGTCGTCGTGGTGGTG
AGCCAGCTCGTTTGTTTACTTACCAATGGCAAGAAGCCATCGATGGAATA
TGGCTTCGACCGGAAAAACGCGAGCAATGTAAAAGAGAAGTTAACACAAA
AAACTGGATCACGTACCAAGAAGGGAAAGGCGAGAAGCAGGTACCTTAAC
GAAATTCAGTcatgaaattttcttaaaatac Run BLAST on NCBI protein sequence of TCONS_00046090-protein >TCONS_00046090-protein ID=TCONS_00046090-protein|Name=TCONS_00046090-protein|organism=Clytia hemisphaerica|type=polypeptide|length=407bp
MRERVPKISATNVNNIVICSECKGTYSKGFKSRHQIECGKTGGRIMIPMV
PVKDMVITEYPPEFKEVINKMKIDEISSLAKTDPFILVVGARIFNGNKCK
EEKIQEVNRRVRSSMRLLSRLLLKFNESFGSEKTLSSLFDRENLKHLRFA
IDALSENEDEVKAGLKVQIQNVIKLAAKTLEAHFLVEAKKELSEMVCEFM
KVFHLVEDELFNGALYKIKQKRNKSTRKPGNLPDEEIVQDLKSYLLGIIR
KDQFIFXEVKKLYLRCSTEKTFNIYLRFAIDALSENEDEVKAGLKVQIQN
VIKLAAKTLEAHFLVEAKKELSEMVCEFMKVFHLVEDELFNGALYKIKQK
RNKSTRKPGNLPDEEIVQDLKSYLLGIIRKDQFIFXKKGTNQPGSQEIYR
MKKLYKI Run BLAST on NCBI transcript from alignment at scaffold_105:44926..46706 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046090 ID=TCONS_00046090|Name=TCONS_00046090|organism=Clytia hemisphaerica|type=transcript|length=1781bp|location=Sequence derived from alignment at scaffold_105:44926..46706 (Clytia hemisphaerica)
gtattttaagaaaatttcatgACTGAATTTCGTTAAGGTACCTGCTTCTC
GCCTTTCCCTTCTTGGTACGTGATCCAGTTTTTTGTGTTAACTTCTCTTT
TACATTGCTCGCGTTTTTCCGGTCGAAGCCATATTCCATCGATGGCTTCT
TGCCATTGGTAAGTAAACAAACGAGCTGGCTCACCACCACGACGACCATT
AAAAATGGTCAACCTAACGCAGGCAGCGTCTCTAACGTTCACGTATACTT
CACTTGgttgtttgaaaataaattgatcTTTTCgtattattccaagaaga
taTGACTTCAAATCTTGTACAATTTCTTCATCCGGTAAATTTCCTGGCTT
CCGGGTTGATTTGTTCCTTTTTTNTTGAAAATAAATTGATCTTTCCgtat
tattccaagaagataTGACTTCAAATCTTGTACAATTTCTTCATCCGGTA
AATTTCCTGGCTTCCGGGTTGATTTGTTCCTTTTTTGCTTAATCTTATAA
AGCGCTCCATTGAAAAGCTCATCTTCCACGAGGTGAAACACTTTCATGAA
CTCACAAACCATTTCCGAAAGTTCTTTCTTTGCTTCGACCAAAAAGTGAG
CTTCAAGAGTCTTTGCAGCTAACTTGATGACGTTTTGGATTTGAACTTTT
AATCCAGCTTTTACCTCGTcttcattttctgaaagagCGTCTATAGCAAA
TCTTAAAtaaatgttaaaggttttctcTGTCGAACAACGAAGATAAAGTT
TTTTCACTTCNTTGAAAATAAATTGATCTTTCCgtattattccaagaaga
taTGACTTCAAATCTTGTACAATTTCTTCATCCGGTAAATTTCCTGGCTT
CCGGGTTGATTTGTTCCTTTTTTGCTTAATCTTATAAAGCGCTCCATTGA
AAAGCTCATCTTCCACGAGGTGAAACACTTTCATGAACTCACAAACCATT
TCCGAAAGTTCTTTCTTTGCTTCGACCAAAAAGTGAGCTTCAAGAGTCTT
TGCAGCTAACTTGATGACGTTTTGGATTTGAACTTTTAATCCAGCTTTTA
CCTCGTcttcattttctgaaagagCGTCTATAGCAAATCTTAAATGTTTA
AGGTTTTCTCTGTCGAACAACGAAGATAAAGTTTTTTCACTTCCAAAAGA
TTCGTTGAATTTGAGGAGAAGACGGCTCAAGAGCCGCATTGAAGAACGGA
CCCGTCGGTTCACTTCCTGTATCTTCTCTTCCTTGCATTTATTCCCGTTG
AAAATACGGGCACCAACAACAAGAATAAAGGGGTCTGTTTTGGCGAGTGA
AGAGATTTCATCTATTTTCATCTTGTTGATTACCTCTTTGAATTCAGGCG
GGTATTCCGTGATAACCATATCTTTCACAGGGACCATAGGAATCATTATT
CGACCCCCTGTTTTTCCGCATTCGATTTGATGGCGGGATTTGAACCCTTT
TGAATAGGTTCCCTTACATTCGGAGCAGATAACTATGTTGTTAACATTCG
TGGCAGAGATTTTTGGTACTCTCTCTCTCATGGATCATTTCTTGTTGATT
GTACTTAAAAATCCCTTCTTTCTTAAGGTTATCAAAGCATTTGTTATGCA
GctctttaggttttgataagaTCTCTATGATTGCCGGCTCATCCTTGTGT
ATTAACTTCAGATGACGACTTAAAACACTTTGAAGCTTTTTGCAACCAAA
GGGACAGGGGTGCTTgggtcttttctttttctttgtaataccataacaat
cccacaatgcatcgcttttttagaataATCA Coding sequence (CDS) from alignment at scaffold_105:44926..46706 >TCONS_00046090 ID=TCONS_00046090|Name=TCONS_00046090|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at scaffold_105:44926..46706 (Clytia hemisphaerica)
TCAAATCTTGTACAATTTCTTCATCCGGTAAATTTCCTGGCTTCCGGGTT
GATTTGTTCCTTTTTTNTTGAAAATAAATTGATCTTTCCgtattattcca
agaagataTGACTTCAAATCTTGTACAATTTCTTCATCCGGTAAATTTCC
TGGCTTCCGGGTTGATTTGTTCCTTTTTTGCTTAATCTTATAAAGCGCTC
CATTGAAAAGCTCATCTTCCACGAGGTGAAACACTTTCATGAACTCACAA
ACCATTTCCGAAAGTTCTTTCTTTGCTTCGACCAAAAAGTGAGCTTCAAG
AGTCTTTGCAGCTAACTTGATGACGTTTTGGATTTGAACTTTTAATCCAG
CTTTTACCTCGTcttcattttctgaaagagCGTCTATAGCAAATCTTAAA
taaatgttaaaggttttctcTGTCGAACAACGAAGATAAAGTTTTTTCAC
TTCNTTGAAAATAAATTGATCTTTCCgtattattccaagaagataTGACT
TCAAATCTTGTACAATTTCTTCATCCGGTAAATTTCCTGGCTTCCGGGTT
GATTTGTTCCTTTTTTGCTTAATCTTATAAAGCGCTCCATTGAAAAGCTC
ATCTTCCACGAGGTGAAACACTTTCATGAACTCACAAACCATTTCCGAAA
GTTCTTTCTTTGCTTCGACCAAAAAGTGAGCTTCAAGAGTCTTTGCAGCT
AACTTGATGACGTTTTGGATTTGAACTTTTAATCCAGCTTTTACCTCGTc
ttcattttctgaaagagCGTCTATAGCAAATCTTAAATGTTTAAGGTTTT
CTCTGTCGAACAACGAAGATAAAGTTTTTTCACTTCCAAAAGATTCGTTG
AATTTGAGGAGAAGACGGCTCAAGAGCCGCATTGAAGAACGGACCCGTCG
GTTCACTTCCTGTATCTTCTCTTCCTTGCATTTATTCCCGTTGAAAATAC
GGGCACCAACAACAAGAATAAAGGGGTCTGTTTTGGCGAGTGAAGAGATT
TCATCTATTTTCATCTTGTTGATTACCTCTTTGAATTCAGGCGGGTATTC
CGTGATAACCATATCTTTCACAGGGACCATAGGAATCATTATTCGACCCC
CTGTTTTTCCGCATTCGATTTGATGGCGGGATTTGAACCCTTTTGAATAG
GTTCCCTTACATTCGGAGCAGATAACTATGTTGTTAACATTCGTGGCAGA
GATTTTTGGTACTCTCTCTCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046090-exon-scaffold_105-1491911889:44926..46706 | TCONS_00046090-exon-scaffold_105-1491911889:44926..46706 | Clytia hemisphaerica | exon |
| TCONS_00046090-exon-scaffold_105-1510915933:44926..46706 | TCONS_00046090-exon-scaffold_105-1510915933:44926..46706 | Clytia hemisphaerica | exon |
| TCONS_00046090-exon-scaffold_105-1575043694:44926..46706 | TCONS_00046090-exon-scaffold_105-1575043694:44926..46706 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_105 | supercontig | scaffold_105:44926..46706 . |
Blast
The following BLAST results are available for this feature:
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