TCONS_00046093 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046093
Unique NameTCONS_00046093
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length765

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046093 ID=TCONS_00046093|Name=TCONS_00046093|organism=Clytia hemisphaerica|type=transcript|length=765bp
CATTTGCCCTCAAAAAAAGGTTTCTTCGTGTGAAAGAATCACCGTTGCGG
AATGCTGCTGTCCAAGCAGTATCAGCTTGGTGCCTAGAAGAGGAGGAAGC
AGATAAAACTGACTTTTATGACTATACTTTGTCTTGGACAAACAGAATAA
ACAGAGGAGGCCTAATGATCGTGAAAGaaagcttttttgttttcattaga
AGAGTTGAACTTTCTGTTCGTGGTATTTTGAACCAGACTCTAATCAAAAC
ATACAATGGTGAGGATTTGAGAGATACATTGTTCAATAAACTAANTGAAA
GaaagcttttttgttttcattagaAGAGTTGAACTTTCTGTTCGTGGTAT
TTTGAACCAGACTCTAATCAAAACATACAATGGTGAGGATTTGAGAGATA
CATTGTTCAATAGACTAATGAGTGACAGCCTTATAGAAAGCACCTGGGCT
TCATTAAGCCGCATGATTCTATCAAACAAATTGAGGGCAACTTTAAAAGA
AATAATCCTAAAGAAGTGGATCAATTTGCGAATTAGATCTTTTGTAACTG
CATGGATTTAAGCTGCAAAATCCAAACAAGGTGAAGAGAAACTATCAAAA
AAGGGCGAAgtatctttgaaaaaaggtcttgCTCAATAGCTTTTgagttt
tatgatttttttgtcttATTGTTATactaatatatttaaaaaagaatctt
GTGTGTTCAGCTATATATAGATATCAAAACCAAAGAGAAAGCCTTAGATC
AGAAAACTTTACCCA
Run BLAST on NCBI

protein sequence of TCONS_00046093-protein

>TCONS_00046093-protein ID=TCONS_00046093-protein|Name=TCONS_00046093-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
FALKKRFLRVKESPLRNAAVQAVSAWCLEEEEADKTDFYDYTLSWTNRIN
RGGLMIVKESFFVFIRRVELSVRGILNQTLIKTYNGEDLRDTLFNKLXER
KLFCFH
Run BLAST on NCBI

transcript from alignment at scaffold_105:60771..61535

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046093 ID=TCONS_00046093|Name=TCONS_00046093|organism=Clytia hemisphaerica|type=transcript|length=765bp|location=Sequence derived from alignment at scaffold_105:60771..61535 (Clytia hemisphaerica)
TGGGTAAAGTTTTCTGATCTAAGGCTTTCTCTTTGGTTTTGATATCTATA
TATAGCTGAACACACaagattcttttttaaatatattagtATAACAATaa
gacaaaaaaatcataaaactcAAAAGCTATTGAGcaagaccttttttcaa
agatacTTCGCCCTTTTTTGATAGTTTCTCTTCACCTTGTTTGGATTTTG
CAGCTTAAATCCATGCAGTTACAAAAGATCTAATTCGCAAATTGATCCAC
TTCTTTAGGATTATTTCTTTTAAAGTTGCCCTCAATTTGTTTGATAGAAT
CATGCGGCTTAATGAAGCCCAGGTGCTTTCTATAAGGCTGTCACTCATTA
GTCTATTGAACAATGTATCTCTCAAATCCTCACCATTGTATGTTTTGATT
AGAGTCTGGTTCAAAATACCACGAACAGAAAGTTCAACTCTtctaatgaa
aacaaaaaagctttCTTTCANTTAGTTTATTGAACAATGTATCTCTCAAA
TCCTCACCATTGTATGTTTTGATTAGAGTCTGGTTCAAAATACCACGAAC
AGAAAGTTCAACTCTtctaatgaaaacaaaaaagctttCTTTCACGATCA
TTAGGCCTCCTCTGTTTATTCTGTTTGTCCAAGACAAAGTATAGTCATAA
AAGTCAGTTTTATCTGCTTCCTCCTCTTCTAGGCACCAAGCTGATACTGC
TTGGACAGCAGCATTCCGCAACGGTGATTCTTTCACACGAAGAAACCTTT
TTTTGAGGGCAAATG

Coding sequence (CDS) from alignment at scaffold_105:60771..61535

>TCONS_00046093 ID=TCONS_00046093|Name=TCONS_00046093|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_105:60771..61535 (Clytia hemisphaerica)
ctaatgaaaacaaaaaagctttCTTTCANTTAGTTTATTGAACAATGTAT
CTCTCAAATCCTCACCATTGTATGTTTTGATTAGAGTCTGGTTCAAAATA
CCACGAACAGAAAGTTCAACTCTtctaatgaaaacaaaaaagctttCTTT
CACGATCATTAGGCCTCCTCTGTTTATTCTGTTTGTCCAAGACAAAGTAT
AGTCATAAAAGTCAGTTTTATCTGCTTCCTCCTCTTCTAGGCACCAAGCT
GATACTGCTTGGACAGCAGCATTCCGCAACGGTGATTCTTTCACACGAAG
AAACCTTTTTTTGAGGGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029437XLOC_029437Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046093-proteinTCONS_00046093-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046093-exon-scaffold_105-1491911889:60771..61535TCONS_00046093-exon-scaffold_105-1491911889:60771..61535Clytia hemisphaericaexon
TCONS_00046093-exon-scaffold_105-1510915933:60771..61535TCONS_00046093-exon-scaffold_105-1510915933:60771..61535Clytia hemisphaericaexon
TCONS_00046093-exon-scaffold_105-1575043694:60771..61535TCONS_00046093-exon-scaffold_105-1575043694:60771..61535Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:60771..61535 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.907299	0.740047	0.126139	0.106413	6.62196	5.58621	3.28624	3.54225	1.59276	1.27681	0.560341	1.29958	1.19535	1.37008	1.06839	1.44597	0.183741	1.52398	0.791634	1.13881	1.46784	0.656095	0.538057	0.59796	1.32473	0.983213	1.67105	0.644535	0.327844	0.234545
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046093 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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