TCONS_00046094 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046094
Unique NameTCONS_00046094
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length656

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046094 ID=TCONS_00046094|Name=TCONS_00046094|organism=Clytia hemisphaerica|type=transcript|length=656bp
TTTTAAACTCTCAACAAATGTAAAAAACTGAATCGGTGTGCAACAACAAT
TTACTTTCCTGCTCTCCTGAAGTTCCTGTCAAACTGTCTTTAGCCACTTG
CAAGTAAAAGAAGTGATTTATTTACTTTACATCATGGATGAGTATAGCAG
CGAAAATATTgttgattttactgatgattCCTTCAATGAAGATGAATTAG
AAGAACTTTTCATTGTAACAGAAAATTGTGGCAAAGTTGACTTTGAAATA
GAACTTTCGCCTTCAGAACAAACTCAACTTCTAGAAAGTGATGGTGCTGA
AGTCTCCATCATTCCACCTCTGACGTTTGTCGATGAAAGAGACATTGATG
TGCTGCATGTTCCTGCAATCCGATTCTGCCCTGATCCTGCTGAGAAGATA
CGAGATGTATTCCTCTGTAGATGGTGCAAGGAAACGTTTTCAAGCAATGC
TATTGTCCAAAATCATGACAAAAAATGTTTCCAGAATCCTGCCAGAAGAA
CTAAACATGGAAATAAAATTGGTGTGTATATAACTCTGATTCTGAGTAAA
ACCCCAGGGGGCACTGGCCTTGAATGACTGGGACGTGTCGCTGAGGATTG
AGATATAGACTCTGTCAGATACTGATCAttgctgaaattttgaaccCTGA
CAGGac
Run BLAST on NCBI

protein sequence of TCONS_00046094-protein

>TCONS_00046094-protein ID=TCONS_00046094-protein|Name=TCONS_00046094-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MDEYSSENIVDFTDDSFNEDELEELFIVTENCGKVDFEIELSPSEQTQLL
ESDGAEVSIIPPLTFVDERDIDVLHVPAIRFCPDPAEKIRDVFLCRWCKE
TFSSNAIVQNHDKKCFQNPARRTKHGNKIGVYITLILSKTPGGTGLE
Run BLAST on NCBI

transcript from alignment at scaffold_105:62468..63123

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046094 ID=TCONS_00046094|Name=TCONS_00046094|organism=Clytia hemisphaerica|type=transcript|length=656bp|location=Sequence derived from alignment at scaffold_105:62468..63123 (Clytia hemisphaerica)
gtCCTGTCAGggttcaaaatttcagcaaTGATCAGTATCTGACAGAGTCT
ATATCTCAATCCTCAGCGACACGTCCCAGTCATTCAAGGCCAGTGCCCCC
TGGGGTTTTACTCAGAATCAGAGTTATATACACACCAATTTTATTTCCAT
GTTTAGTTCTTCTGGCAGGATTCTGGAAACATTTTTTGTCATGATTTTGG
ACAATAGCATTGCTTGAAAACGTTTCCTTGCACCATCTACAGAGGAATAC
ATCTCGTATCTTCTCAGCAGGATCAGGGCAGAATCGGATTGCAGGAACAT
GCAGCACATCAATGTCTCTTTCATCGACAAACGTCAGAGGTGGAATGATG
GAGACTTCAGCACCATCACTTTCTAGAAGTTGAGTTTGTTCTGAAGGCGA
AAGTTCTATTTCAAAGTCAACTTTGCCACAATTTTCTGTTACAATGAAAA
GTTCTTCTAATTCATCTTCATTGAAGGaatcatcagtaaaatcaacAATA
TTTTCGCTGCTATACTCATCCATGATGTAAAGTAAATAAATCACTTCTTT
TACTTGCAAGTGGCTAAAGACAGTTTGACAGGAACTTCAGGAGAGCAGGA
AAGTAAATTGTTGTTGCACACCGATTCAGTTTTTTACATTTGTTGAGAGT
TTAAAA

Coding sequence (CDS) from alignment at scaffold_105:62468..63123

>TCONS_00046094 ID=TCONS_00046094|Name=TCONS_00046094|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at scaffold_105:62468..63123 (Clytia hemisphaerica)
TCATTCAAGGCCAGTGCCCCCTGGGGTTTTACTCAGAATCAGAGTTATAT
ACACACCAATTTTATTTCCATGTTTAGTTCTTCTGGCAGGATTCTGGAAA
CATTTTTTGTCATGATTTTGGACAATAGCATTGCTTGAAAACGTTTCCTT
GCACCATCTACAGAGGAATACATCTCGTATCTTCTCAGCAGGATCAGGGC
AGAATCGGATTGCAGGAACATGCAGCACATCAATGTCTCTTTCATCGACA
AACGTCAGAGGTGGAATGATGGAGACTTCAGCACCATCACTTTCTAGAAG
TTGAGTTTGTTCTGAAGGCGAAAGTTCTATTTCAAAGTCAACTTTGCCAC
AATTTTCTGTTACAATGAAAAGTTCTTCTAATTCATCTTCATTGAAGGaa
tcatcagtaaaatcaacAATATTTTCGCTGCTATACTCATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029438XLOC_029438Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046094-proteinTCONS_00046094-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046094-exon-scaffold_105-1491911889:62468..63123TCONS_00046094-exon-scaffold_105-1491911889:62468..63123Clytia hemisphaericaexon
TCONS_00046094-exon-scaffold_105-1510915933:62468..63123TCONS_00046094-exon-scaffold_105-1510915933:62468..63123Clytia hemisphaericaexon
TCONS_00046094-exon-scaffold_105-1575043694:62468..63123TCONS_00046094-exon-scaffold_105-1575043694:62468..63123Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:62468..63123 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.714317	0.619175	0	0.175838	10.1681	7.02005	4.28571	4.872	2.51903	4.53407	2.80405	1.95578	2.74485	1.91864	3.01956	4.03619	1.67314	2.74812	1.4343	2.38377	2.09049	1.9699	0.273007	0.692056	1.193	0.760519	1.74128	0.951644	0.576205	0.269258
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046094 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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