TCONS_00046095 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046095
Unique NameTCONS_00046095
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length311

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046095 ID=TCONS_00046095|Name=TCONS_00046095|organism=Clytia hemisphaerica|type=transcript|length=311bp
gtgtacttattTCCCTAGTTGAGtatattctttttcaatttttgaattag
TATATTCACCTCTaattttcttgtttaatttGATGTCGGCGTGTCTCCTC
TTCAATAACCGCAACCACTTTTCTCCCGGCAAGTTCTTTCCGTCGGCAAA
TTCTGATCGTCCGACCAAATCCAAAAATTGTTTGACATTCGATCTCAATT
GCGTGGATGTTTGACCACAGCCGATTCTCGACATTGCTTTCAGCCACTCC
TTAAGGTCGCTTTCCTCTTCGCGTGATAAAATGGGCGTTGACCCACACCT
GGCTTTGTTTT
Run BLAST on NCBI

protein sequence of TCONS_00046095-protein

>TCONS_00046095-protein ID=TCONS_00046095-protein|Name=TCONS_00046095-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
NKARCGSTPILSREEESDLKEWLKAMSRIGCGQTSTQLRSNVKQFLDLVG
RSEFADGKNLPGEKWLRLLKRRHADIKLNKKIRGEYTNSKIEKEYTQLGK
Run BLAST on NCBI

transcript from alignment at scaffold_105:99670..99980

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046095 ID=TCONS_00046095|Name=TCONS_00046095|organism=Clytia hemisphaerica|type=transcript|length=311bp|location=Sequence derived from alignment at scaffold_105:99670..99980 (Clytia hemisphaerica)
AAAACAAAGCCAGGTGTGGGTCAACGCCCATTTTATCACGCGAAGAGGAA
AGCGACCTTAAGGAGTGGCTGAAAGCAATGTCGAGAATCGGCTGTGGTCA
AACATCCACGCAATTGAGATCGAATGTCAAACAATTTTTGGATTTGGTCG
GACGATCAGAATTTGCCGACGGAAAGAACTTGCCGGGAGAAAAGTGGTTG
CGGTTATTGAAGAGGAGACACGCCGACATCaaattaaacaagaaaattAG
AGGTGAATATActaattcaaaaattgaaaaagaatataCTCAACTAGGGA
aataagtacac

Coding sequence (CDS) from alignment at scaffold_105:99670..99980

>TCONS_00046095 ID=TCONS_00046095|Name=TCONS_00046095|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_105:99670..99980 (Clytia hemisphaerica)
AACAAAGCCAGGTGTGGGTCAACGCCCATTTTATCACGCGAAGAGGAAAG
CGACCTTAAGGAGTGGCTGAAAGCAATGTCGAGAATCGGCTGTGGTCAAA
CATCCACGCAATTGAGATCGAATGTCAAACAATTTTTGGATTTGGTCGGA
CGATCAGAATTTGCCGACGGAAAGAACTTGCCGGGAGAAAAGTGGTTGCG
GTTATTGAAGAGGAGACACGCCGACATCaaattaaacaagaaaattAGAG
GTGAATATActaattcaaaaattgaaaaagaatataCTCAACTAGGGAaa
taa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029439XLOC_029439Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046095-proteinTCONS_00046095-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046095-exon-scaffold_105-1491911889:99670..99980TCONS_00046095-exon-scaffold_105-1491911889:99670..99980Clytia hemisphaericaexon
TCONS_00046095-exon-scaffold_105-1510915933:99670..99980TCONS_00046095-exon-scaffold_105-1510915933:99670..99980Clytia hemisphaericaexon
TCONS_00046095-exon-scaffold_105-1575043694:99670..99980TCONS_00046095-exon-scaffold_105-1575043694:99670..99980Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:99670..99980 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.73844	3.05145	0.39367	0.385144	1.87551	0.741025	3.12905	3.76635	10.5476	6.53247	6.34058	9.26232	7.39956	11.5268	19.1506	17.5853	20.3586	21.1344	23.6544	17.0174	11.4296	11.3139	7.57439	9.78567	0	0	8.58148	3.56159	1.92953	5.11131
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006600HTH_CenpB_DNA-bd_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046095 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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