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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046099 ID=TCONS_00046099|Name=TCONS_00046099|organism=Clytia hemisphaerica|type=transcript|length=1567bp
GTACcacacaagaaatcacaagaggagaggccatggccagcctgaagcct
gtaatcaagccttcagccctaccacaGTGCCACTTGTCGATTTCCTCTGC
AGTAAAAATGatcaactaaatcagccaacagccaacGCTAGAATTCATCT
GATCAACTTTATGCGAGACCCTACCTCACAAATGCACTACGATTGCTCTA
AAAGCCGATCACCTGAATTTGTTTGCATGATTGGAGCCTGATCTTGAGAT
AATTTTGTACcacacaagaaatcacaagaggagaggccatggccagcctg
aagcctgtaatcaagccttcagccctaccacagtgccacttgtcgatttc
ctccgcagtaaaaattatcaactaaatcagccaacagccaacGCAAGAAT
TCATCTGATCAACTTTATGCAagaccctaccttacaaatGCACTACGATT
GCTCTAAAAGCCGATCACCTGAATTTGTTTGCATGATTGGAGCCTGATCT
TGAGATAATTTTGTACcacacaagaaatcacaagaggagaggccatggcc
agcctgaagcctgtaaacaagccttcagccctaccacagtgccacttgtc
gatttcctccgcagtaaaaattatcaactaaatcagccaacagccaatGC
TAGAATTCATCTCATCATCTTTATACGAGAGCCTACCTTACATATGCACT
ACGATTGCTCTAAAAGCCGATCACCTGAATTTGTTTGCATGATTGGAGCC
TGATCTTGAGATAATTTTGTACcacacaagaaatcacaagagaagaggcc
atggccagcctgaagcctgtaatcaagccttcagccctaccacagtgcca
cttgtcgatttcctccgcagtaaaaattatcaactaaatcagccaacagc
caatGCTAGAATTCATCTGATCATCTTTATACAAGAGCCTACCTTACATA
TGCACTATGATTGCTCTAAAAGCCAGTCACTTGAATTTGCATGATTGAAG
CCTGATCTCAAGATAATTTTGTACcacacaagaaatcacaaggggagagg
ccatggccagcctgaagcctgtaaacaagccttcagccctaccactGTGC
CACTTGTCGATTTCCTCCGCAGTAAAAATTATCAACTAAATCAGCCAACA
CCCAACGTTAGAATTCATCTGATCAACTTGATGAGGCTCTACCTTACAAA
TGCTTTAAGCTATGCAATtaatgtttggatttctagaaagcttacccatt
ccaTTGTCAACAtatcttttatttgaaagtaattgctTCATGGAATAATA
ATTGGCAATCAAATTACGAGATTAGAGatcttaaaaaacttttaatattt
AGGGGAGCCTATTTTTTTGCTTAGGGCTGGACCCAccaaaaacaagcaag
caattGTGAAAAAGTTAACAATACCTCATGATGAAGgatcctttttttct
tctttaaaaaactcgACTTCATATTGGCAATCTGCTAAAAGTCCAGTCAA
AAATGATGGATGAGATGTCAGGATATTCCAAATTTCTTCATGAAGAGAGA
AAACGTGCGCTTTGTTG Run BLAST on NCBI transcript from alignment at scaffold_105:256211..257777 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046099 ID=TCONS_00046099|Name=TCONS_00046099|organism=Clytia hemisphaerica|type=transcript|length=1567bp|location=Sequence derived from alignment at scaffold_105:256211..257777 (Clytia hemisphaerica)
CAACAAAGCGCACGTTTTCTCTCTTCATGAAGAAATTTGGAATATCCTGA
CATCTCATCCATCATTTTTGACTGGACTTTTAGCAGATTGCCAATATGAA
GTcgagttttttaaagaagaaaaaaaggatcCTTCATCATGAGGTATTGT
TAACTTTTTCACaattgcttgcttgtttttggTGGGTCCAGCCCTAAGCA
AAAAAATAGGCTCCCCTaaatattaaaagttttttaagatCTCTAATCTC
GTAATTTGATTGCCAATTATTATTCCATGAagcaattactttcaaataaa
agataTGTTGACAAtggaatgggtaagctttctagaaatccaaacattaA
TTGCATAGCTTAAAGCATTTGTAAGGTAGAGCCTCATCAAGTTGATCAGA
TGAATTCTAACGTTGGGTGTTGGCTGATTTAGTTGATAATTTTTACTGCG
GAGGAAATCGACAAGTGGCACagtggtagggctgaaggcttgtttacagg
cttcaggctggccatggcctctccccttgtgatttcttgtgtgGTACAAA
ATTATCTTGAGATCAGGCTTCAATCATGCAAATTCAAGTGACTGGCTTTT
AGAGCAATCATAGTGCATATGTAAGGTAGGCTCTTGTATAAAGATGATCA
GATGAATTCTAGCattggctgttggctgatttagttgataatttttactg
cggaggaaatcgacaagtggcactgtggtagggctgaaggcttgattaca
ggcttcaggctggccatggcctcttctcttgtgatttcttgtgtgGTACA
AAATTATCTCAAGATCAGGCTCCAATCATGCAAACAAATTCAGGTGATCG
GCTTTTAGAGCAATCGTAGTGCATATGTAAGGTAGGCTCTCGTATAAAGA
TGATGAGATGAATTCTAGCattggctgttggctgatttagttgataattt
ttactgcggaggaaatcgacaagtggcactgtggtagggctgaaggcttg
tttacaggcttcaggctggccatggcctctcctcttgtgatttcttgtgt
gGTACAAAATTATCTCAAGATCAGGCTCCAATCATGCAAACAAATTCAGG
TGATCGGCTTTTAGAGCAATCGTAGTGCatttgtaaggtagggtctTGCA
TAAAGTTGATCAGATGAATTCTTGCgttggctgttggctgatttagttga
taatttttactgcggaggaaatcgacaagtggcactgtggtagggctgaa
ggcttgattacaggcttcaggctggccatggcctctcctcttgtgatttc
ttgtgtgGTACAAAATTATCTCAAGATCAGGCTCCAATCATGCAAACAAA
TTCAGGTGATCGGCTTTTAGAGCAATCGTAGTGCATTTGTGAGGTAGGGT
CTCGCATAAAGTTGATCAGATGAATTCTAGCgttggctgttggctgattt
agttgatCATTTTTACTGCAGAGGAAATCGACAAGTGGCACtgtggtagg
gctgaaggcttgattacaggcttcaggctggccatggcctctcctcttgt
gatttcttgtgtgGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046099-exon-scaffold_105-1491911889:256211..257777 | TCONS_00046099-exon-scaffold_105-1491911889:256211..257777 | Clytia hemisphaerica | exon |
| TCONS_00046099-exon-scaffold_105-1510915933:256211..257777 | TCONS_00046099-exon-scaffold_105-1510915933:256211..257777 | Clytia hemisphaerica | exon |
| TCONS_00046099-exon-scaffold_105-1575043694:256211..257777 | TCONS_00046099-exon-scaffold_105-1575043694:256211..257777 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_105 | supercontig | scaffold_105:256211..257777 . |
Blast
The following BLAST results are available for this feature:
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