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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046100 ID=TCONS_00046100|Name=TCONS_00046100|organism=Clytia hemisphaerica|type=transcript|length=1148bp
CCTAAAAACAAATTGTTCATTTGTCTTCAAGTCTAAGTGATCACAATTCT
ACTTAACAAGAGTAGACTTATAATGAAACAAACTTACTTTATTGtcagaa
aaattaagaaatcttTCCAGTTATAAAATCATCAACCACAGTCACAAGAT
AATTCATTGTACCAGTATATTGCCAATAACCTGAAAAAAGAGagggaaaa
agaagaaaatccgCACAGTTCCATCTCAGGGTTTGAACAtgaaaaactat
ttcaaaacaTGAGTTGACTCTTCAGAATGCAACTATGTTTCGTCCACCCA
ACCACCCTTTCACATTGTGTAAAATATCTACAGAACAGTAATAAAACAGG
ATTAGCCAACGGTATTTAATTATAAATAGTAATACGTTCAAGAATATAAC
ACAAATGTACTCTTTTCTACCaggggggggtgaagcagttagcACAATTA
GGCAAATTTTCAGcaggggaccacccttttttgcagttagtacatctgag
tactaagtgattttatccaattcatatggcacaccaccacggtactaacc
ggcatgatgtcttgtactaactgcttcacccccctGTTTCTACCACAATA
TAAATACACGGTTAATCCTTACAATATGATATGATACTGTATCCCATCAT
TCCAAAGGAACTTTCACCGTTTTATTCCCCCTACTTTACTTTAAAATCAT
CAGAATGTTACTTCTTAATGACATgcatttttgttaaaaacaaTTAACAT
AGggaatcaacttttttatccatataaagtaaaaaatagtttttataaAA
CAATGTCCCAGAAGAATTAGCTTCGCTTTCTTATCCAGTAACAACAAACT
GCCAGTTGATAagaattcaaaaagaaagaattgtCTTTTATAATCATTAG
TATGGTAAGTTCGAAGATTTTCATTTAGGCAggacaaatttaatttcttt
tctaCTTACTTAAATCCTATTTGACCTGGGTGGAACAATGTGTAAGAAAA
TAACGTTTGAAAATTGAGAATCTTTGCTGGCCACATGAATTTGTATGATT
GGAGCCTGATCTTGAGATAATTTTGTACcacacaagaaatcacaagggga
gaggccatggccagcctgaagcctgtaaacaagccttcagccctacca Run BLAST on NCBI transcript from alignment at scaffold_105:259369..260516 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046100 ID=TCONS_00046100|Name=TCONS_00046100|organism=Clytia hemisphaerica|type=transcript|length=1148bp|location=Sequence derived from alignment at scaffold_105:259369..260516 (Clytia hemisphaerica)
tggtagggctgaaggcttgtttacaggcttcaggctggccatggcctctc
cccttgtgatttcttgtgtgGTACAAAATTATCTCAAGATCAGGCTCCAA
TCATACAAATTCATGTGGCCAGCAAAGATTCTCAATTTTCAAACGTTATT
TTCTTACACATTGTTCCACCCAGGTCAAATAGGATTTAAGTAAGtagaaa
agaaattaaatttgtccTGCCTAAATGAAAATCTTCGAACTTACCATACT
AATGATTATAAAAGacaattctttctttttgaattctTATCAACTGGCAG
TTTGTTGTTACTGGATAAGAAAGCGAAGCTAATTCTTCTGGGACATTGTT
ttataaaaactattttttactttatatggataaaaaagttgattccCTAT
GTTAAttgtttttaacaaaaatgcATGTCATTAAGAAGTAACATTCTGAT
GATTTTAAAGTAAAGTAGGGGGAATAAAACGGTGAAAGTTCCTTTGGAAT
GATGGGATACAGTATCATATCATATTGTAAGGATTAACCGTGTATTTATA
TTGTGGTAGAAACaggggggtgaagcagttagtacaagacatcatgccgg
ttagtaccgtggtggtgtgccatatgaattggataaaatcacttagtact
cagatgtactaactgcaaaaaagggtggtcccctgCTGAAAATTTGCCTA
ATTGTgctaactgcttcacccccccctGGTAGAAAAGAGTACATTTGTGT
TATATTCTTGAACGTATTACTATTTATAATTAAATACCGTTGGCTAATCC
TGTTTTATTACTGTTCTGTAGATATTTTACACAATGTGAAAGGGTGGTTG
GGTGGACGAAACATAGTTGCATTCTGAAGAGTCAACTCAtgttttgaaat
agtttttcaTGTTCAAACCCTGAGATGGAACTGTGcggattttcttcttt
ttccctCTCTTTTTTCAGGTTATTGGCAATATACTGGTACAATGAATTAT
CTTGTGACTGTGGTTGATGATTTTATAACTGGAaagatttcttaattttt
ctgaCAATAAAGTAAGTTTGTTTCATTATAAGTCTACTCTTGTTAAGTAG
AATTGTGATCACTTAGACTTGAAGACAAATGAACAATTTGTTTTTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046100-exon-scaffold_105-1491911889:259369..260516 | TCONS_00046100-exon-scaffold_105-1491911889:259369..260516 | Clytia hemisphaerica | exon |
| TCONS_00046100-exon-scaffold_105-1510915933:259369..260516 | TCONS_00046100-exon-scaffold_105-1510915933:259369..260516 | Clytia hemisphaerica | exon |
| TCONS_00046100-exon-scaffold_105-1575043694:259369..260516 | TCONS_00046100-exon-scaffold_105-1575043694:259369..260516 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_105 | supercontig | scaffold_105:259369..260516 . |
Blast
The following BLAST results are available for this feature:
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