TCONS_00046112 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046112
Unique NameTCONS_00046112
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length465

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046112 ID=TCONS_00046112|Name=TCONS_00046112|organism=Clytia hemisphaerica|type=transcript|length=465bp
CCCTTTTAtgtttcctttttatttttaattagtaTTTTAAACACTTGCtt
tccttgaggtcagatctctgatcttcaccatatatagtAATATAGCGGTA
TTGAATAAGGGTTGCAAAGCAATCCAGAccccacctcaattcgcaagttg
ctagcaaaataagagacactcttgAAATATCCCAAAAGAGACAGGGTTGT
AAGCCTTATAATACCCCAAACAAACCACGGCAACACAGTTCTTGTGGACG
TTTACTTGTGGCAAAGAAATTCTCAccagaaaaattaattttaaataaGT
TCATTCCATGCCAAATGTTACTTTGCCATGTTTCTATTTGATTGCTTCGg
ctgttttgaaaaccaaaacaaatggCCTAAAGTTTATGCCTGGGGTTCCC
TTTGTTTGATGGCCTGCATGGTACGCAAATTTTTGCAGACGACCCTTTTT
TTCTGCCAGTTtata
Run BLAST on NCBI

transcript from alignment at scaffold_105:495393..495857

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046112 ID=TCONS_00046112|Name=TCONS_00046112|organism=Clytia hemisphaerica|type=transcript|length=465bp|location=Sequence derived from alignment at scaffold_105:495393..495857 (Clytia hemisphaerica)
tataAACTGGCAGAAAAAAAGGGTCGTCTGCAAAAATTTGCGTACCATGC AGGCCATCAAACAAAGGGAACCCCAGGCATAAACTTTAGGccatttgttt tggttttcaaaacagcCGAAGCAATCAAATAGAAACATGGCAAAGTAACA TTTGGCATGGAATGAACttatttaaaattaatttttctggTGAGAATTTC TTTGCCACAAGTAAACGTCCACAAGAACTGTGTTGCCGTGGTTTGTTTGG GGTATTATAAGGCTTACAACCCTGTCTCTTTTGGGATATTTcaagagtgt ctcttattttgctagcaacttgcgaattgaggtggggTCTGGATTGCTTT GCAACCCTTATTCAATACCGCTATATTactatatatggtgaagatcagag atctgacctcaaggaaaGCAAGTGTTTAAAAtactaattaaaaataaaaa ggaaacaTAAAAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029456XLOC_029456Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046112-exon-scaffold_105-1491911889:495393..495857TCONS_00046112-exon-scaffold_105-1491911889:495393..495857Clytia hemisphaericaexon
TCONS_00046112-exon-scaffold_105-1510915933:495393..495857TCONS_00046112-exon-scaffold_105-1510915933:495393..495857Clytia hemisphaericaexon
TCONS_00046112-exon-scaffold_105-1575043694:495393..495857TCONS_00046112-exon-scaffold_105-1575043694:495393..495857Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:495393..495857 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.558077 0.135343 1.44518 0.929676 0.747558 0.606687 0.356509 0.667213 0.3771 0.294789 0 0.279513 0.467174 0.0968876 0.159127 0.337799 0.624579 0.647186 0 0.158848 0.407739 0.406104 0 0 0.45259 1.47427 0 1.06683 0 0.159327
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046112 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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