TCONS_00046168 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046168
Unique NameTCONS_00046168
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1564

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046168 ID=TCONS_00046168|Name=TCONS_00046168|organism=Clytia hemisphaerica|type=transcript|length=1564bp
ATTTTAATGTTTATAAATTTAAAAGACTGTTAAAGCTGGTTTCAAAATTA
TTAAGCTGATTTTGATTCTACTCTCTTCCTTTATAAGGGTGACTTTTGTC
TTCAACCACTTCAAATTCTCACGGAAAAATTAAACAGTAAAGAGCACAAA
AGGACCAGTATGTCAACACAAGCAAATATTGAATCAATTTTAAGTGGAAA
TGTAACAGTTCACATTTTTGGATACGGTTCTCTAACATGGAAACCGGACT
TTGATTATGATCGTTCTTTTGTGGGCTACGTCAAAGGGTACGAGAGACGT
TTCTGGCAAGCGAGTACGTATCACCGTGGCACGAAAGAACATCCGGGGAG
GTGTGTTACTCTAACTCCGGTCGAAAATGGTACAACATGGGGCTTGGTGT
ACGAAATCAGCGATACATCAAAGATTGCGACAGCCCTAGACTATCTAAAC
GTTCGAGAACAAAAGATTGGAGGTTATGAAGTTTATGTTGTTCCCGTACA
CCCGTTGGACTCTTGCGATCAAAAACATGAGGCTATGTATTCAATATTAT
ACATCGCAACACCCGAATGTAAGGGATTTCTCGGTGAAGATAGCTACGAT
AAGCTAGCTGGTGATATAGCCACGTCTTGTGGGAAAATTGGCCATAATAT
TGAGTACTTGTTCCGTCTAACAGATTTTATGAGAGAGTTTTTACCTGGTG
AACCGGATGAGCATTTATATACTTTGGATCGGCTTGTAAGACGCAAGACT
GGTGTCAATGAGAATGGTACTGAAACTTGGTTTGAACTCTTAGACAAAAC
AGACTTTGAGCGGTTAGTTTATCCGCCCAGTAAATATGATTATAAGAAGC
TGTGGAGGAAGGCTATCATGAGACAAGTAcgcaagaaatcaaaaatcgat
CGTTGGGCTTTATTGTTATTACAGATCGATAATATGAGAGATCGAAGGAG
TGATTTGTTGGAGAAAGTAGAGTTTGGAACCTCACTAGATATTGGTGATG
ATGAGTTGTATGGTGTGGATGAGATTGATGAGAATGGGAATGTGGTCAGA
CGAAGCAGATCACGTGGTGTATCAGAGTGTAGTAGTTATTGTGGTTCTCC
ACCTTGATTGGTTGATTTGTTGTTCGTTTGATGTGGTGGAAGATTCCTCA
TGTTTTTGTGTCCTCGTATTGAAATAATGAAACTTCATTTCCAGttcatt
atgatttttataGCTCTTCTGAAATAGAAATTTAACTCCATTTTCCGTAT
AAAAGGAATTTTTAGAAGTCAGGattatattttgatataaattttcCATC
TTTCATCGTCGCTTTCCTTTTACCTGTAACATTatgttcaaattttaaat
taaaaattattcGAAAATTTGAAGCCAGGGAGTGTTGGGTTTTAATGGAT
GAAGAtcgatagaaaatttgaattctaTCATTTATCACTCTAGAGTAGTT
GGGCCTGTTGGCGGCGGATGGGGTTAGTTGGCGGACGAGCGACTTTGAAG
CCAGAGAAAAATgaaagttcaaactttaaatcaAATTTTGGATCTCCATC
AACAGGACTTTGAT
Run BLAST on NCBI

protein sequence of TCONS_00046168-protein

>TCONS_00046168-protein ID=TCONS_00046168-protein|Name=TCONS_00046168-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
MSTQANIESILSGNVTVHIFGYGSLTWKPDFDYDRSFVGYVKGYERRFWQ
ASTYHRGTKEHPGRCVTLTPVENGTTWGLVYEISDTSKIATALDYLNVRE
QKIGGYEVYVVPVHPLDSCDQKHEAMYSILYIATPECKGFLGEDSYDKLA
GDIATSCGKIGHNIEYLFRLTDFMREFLPGEPDEHLYTLDRLVRRKTGVN
ENGTETWFELLDKTDFERLVYPPSKYDYKKLWRKAIMRQVRKKSKIDRWA
LLLLQIDNMRDRRSDLLEKVEFGTSLDIGDDELYGVDEIDENGNVVRRSR
SRGVSECSSYCGSPP
Run BLAST on NCBI

transcript from alignment at scaffold_106:293855..295918-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046168 ID=TCONS_00046168|Name=TCONS_00046168|organism=Clytia hemisphaerica|type=transcript|length=2064bp|location=Sequence derived from alignment at scaffold_106:293855..295918- (Clytia hemisphaerica)
ATTTTAATGTTTATAAATTTAAAAGACTGTTAAAGCTGGTTTCAAAATTA
TTAAGCTGATTTTGATTCTACTCTCTTCCTTTATAAGGGTGACTTTTGTC
TTCAACCACTTCAAATTCTCACGGAAAAATTAAACAGTAAAGAGCACAAA
AGGACCAGTATGTCAACACAAGCAAATATTGAATCAATTTTAAGTGGAAA
TGTAACAGTTCACATTTTTGGATACGGTTCTCTAACATGGAAACCGGACT
TTGATTATGATCGTTCTTTTGTGGGCTACGTCAAAGGGTACGAGAGACGT
TTCTGGCAAGCGAGTACGTATCACCGTGGCACGAAAGAACATCCGGGGAG
GTGTGTTACTCTAACTCCGGTCGAAAATGTAAGTGTCTTTTATGAGAGGG
GGTGTTTAGGGTGTGTGTTATCTCCGAGTTAGTTTTGATTACCCATGATG
GACGTAAATAAAATAAGTTTTTTTAATATTGATAATATTTTGAGTAAGAA
TATATTGATGAATGAGATTTGAATACACGCTTTTTATGAGAATGGTGTTC
ATCATTTCATCGAGGATATTCTTAGCCTTTTGGGGGGAAATCATCTTAAA
ATATTCTCATAGCATTCTTTTTGGTTAGGACCGGATAAATTGGCAATTTA
CAGTGAAAAATGAAATTCTTAGGTTTTGTTGCCAAATTCCACGATGGTGA
TCATAATATGATATTCCTAGCTTATTTTCATAAAAAATACGTGTAATGCA
AGGAAATCTCCAAGGTTAGATTTGAAGATGAAACTCATCGCCACTTTTAG
TCAATCGAATGAACCAGGTCTTTTCAATTCTTTTTATCGTAGGGTACAAC
ATGGGGCTTGGTGTACGAAATCAGCGATACATCAAAGATTGCGACAGCCC
TAGACTATCTAAACGTTCGAGAACAAAAGATTGGAGGTTATGAAGTTTAT
GTTGTTCCCGTACACCCGTTGGACTCTTGCGATCAAAAACATGAGGCTAT
GTATTCAATATTATACATCGCAACACCCGAATGTAAGGGATTTCTCGGTG
AAGATAGCTACGATAAGCTAGCTGGTGATATAGCCACGTCTTGTGGGAAA
ATTGGCCATAATATTGAGTACTTGTTCCGTCTAACAGATTTTATGAGAGA
GTTTTTACCTGGTGAACCGGATGAGCATTTATATACTTTGGATCGGCTTG
TAAGACGCAAGACTGGTGTCAATGAGAATGGTACTGAAACTTGGTTTGAA
CTCTTAGACAAAACAGACTTTGAGCGGTTAGTTTATCCGCCCAGTAAATA
TGATTATAAGAAGCTGTGGAGGAAGGCTATCATGAGACAAGTACGCAAGA
AATCAAAAATCGATCGTTGGGCTTTATTGTTATTACAGATCGATAATATG
AGAGATCGAAGGAGTGATTTGTTGGAGAAAGTAGAGTTTGGAACCTCACT
AGATATTGGTGATGATGAGTTGTATGGTGTGGATGAGATTGATGAGAATG
GGAATGTGGTCAGACGAAGCAGATCACGTGGTGTATCAGAGTGTAGTAGT
TATTGTGGTTCTCCACCTTGATTGGTTGATTTGTTGTTCGTTTGATGTGG
TGGAAGATTCCTCATGTTTTTGTGTCCTCGTATTGAAATAATGAAACTTC
ATTTCCAGTTCATTATGATTTTTATAGCTCTTCTGAAATAGAAATTTAAC
TCCATTTTCCGTATAAAAGGAATTTTTAGAAGTCAGGATTATATTTTGAT
ATAAATTTTCCATCTTTCATTTAACCTATTAAGCGCCAACTGGCGTCATA
CGACATCGTCGCTTTCCTTTTACCTGTAACATTATGTTCAAATTTTAAAT
TAAAAATTATTCGAAAATTTGAAGCCAGGGAGTGTTGGGTTTTAATGGAT
GAAGATCGATAGAAAATTTGAATTCTATCATTTATCACTCTAGAGTAGTT
GGGCCTGTTGGCGGCGGATGGGGTTAGTTGGCGGACGAGCGACTTTGAAG
CCAGAGAAAAATGAAAGTTCAAACTTTAAATCAAATTTTGGATCTCCATC
AACAGGACTTTGAT

Coding sequence (CDS) from alignment at scaffold_106:293855..295918-

>TCONS_00046168 ID=TCONS_00046168|Name=TCONS_00046168|organism=Clytia hemisphaerica|type=CDS|length=1896bp|location=Sequence derived from alignment at scaffold_106:293855..295918- (Clytia hemisphaerica)
GGTACAACATGGGGCTTGGTGTACGAAATCAGCGATACATCAAAGATTGC
GACAGCCCTAGACTATCTAAACGTTCGAGAACAAAAGATTGGAGGTTATG
AAGTTTATGTTGTTCCCGTACACCCGTTGGACTCTTGCGATCAAAAACAT
GAGGCTATGTATTCAATATTATACATCGCAACACCCGAATGTAAGGGATT
TCTCGGTGAAGATAGCTACGATAAGCTAGCTGGTGATATAGCCACGTCTT
GTGGGAAAATTGGCCATAATATTGAGTACTTGTTCCGTCTAACAGATTTT
ATGAGAGAGTTTTTACCTGGTGAACCGGATGAGCATTTATATACTTTGGA
TCGGCTTGTAAGACGCAAGACTGGTGTCAATGAGAATGGTACTGAAACTT
GGTTTGAACTCTTAGACAAAACAGACTTTGAGCGGTTAGTTTATCCGCCC
AGTAAATATGATTATAAGAAGCTGTGGAGGAAGGCTATCATGAGACAAGT
ACGCAAGAAATCAAAAATCGATCGTTGGGCTTTATTGTTATTACAGATCG
ATAATATGAGAGATCGAAGGAGTGATTTGTTGGAGAAAGTAGAGTTTGGA
ACCTCACTAGATATTGGTGATGATGAGTTGTATGGTGTGGATGAGATTGA
TGAGAATGGGAATGTGGTCAGACGAAGCAGATCACGTGGTGTATCAGAGT
GTAGTAGTTATTGTGGTTCTCCACCTTGAATGTCAACACAAGCAAATATT
GAATCAATTTTAAGTGGAAATGTAACAGTTCACATTTTTGGATACGGTTC
TCTAACATGGAAACCGGACTTTGATTATGATCGTTCTTTTGTGGGCTACG
TCAAAGGGTACGAGAGACGTTTCTGGCAAGCGAGTACGTATCACCGTGGC
ACGAAAGAACATCCGGGGAGGTGTGTTACTCTAACTCCGGTCGAAAATGG
TACAACATGGGGCTTGGTGTACGAAATCAGCGATACATCAAAGATTGCGA
CAGCCCTAGACTATCTAAACGTTCGAGAACAAAAGATTGGAGGTTATGAA
GTTTATGTTGTTCCCGTACACCCGTTGGACTCTTGCGATCAAAAACATGA
GGCTATGTATTCAATATTATACATCGCAACACCCGAATGTAAGGGATTTC
TCGGTGAAGATAGCTACGATAAGCTAGCTGGTGATATAGCCACGTCTTGT
GGGAAAATTGGCCATAATATTGAGTACTTGTTCCGTCTAACAGATTTTAT
GAGAGAGTTTTTACCTGGTGAACCGGATGAGCATTTATATACTTTGGATC
GGCTTGTAAGACGCAAGACTGGTGTCAATGAGAATGGTACTGAAACTTGG
TTTGAACTCTTAGACAAAACAGACTTTGAGCGGTTAGTTTATCCGCCCAG
TAAATATGATTATAAGAAGCTGTGGAGGAAGGCTATCATGAGACAAGTAC
GCAAGAAATCAAAAATCGATCGTTGGGCTTTATTGTTATTACAGATCGAT
AATATGAGAGATCGAAGGAGTGATTTGTTGGAGAAAGTAGAGTTTGGAAC
CTCACTAGATATTGGTGATGATGAGTTGTATGGTGTGGATGAGATTGATG
AGAATGGGAATGTGGTCAGACGAAGCAGATCACGTGGTGTATCAGAGTGT
AGTAGTTATTGTGGTTCTCCACCTTGAATGTCAACACAAGCAAATATTGA
ATCAATTTTAAGTGGAAATGTAACAGTTCACATTTTTGGATACGGTTCTC
TAACATGGAAACCGGACTTTGATTATGATCGTTCTTTTGTGGGCTACGTC
AAAGGGTACGAGAGACGTTTCTGGCAAGCGAGTACGTATCACCGTGGCAC
GAAAGAACATCCGGGGAGGTGTGTTACTCTAACTCCGGTCGAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029491XLOC_029491Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046168-proteinTCONS_00046168-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046168-exon-scaffold_106-1575043694:295541..295918TCONS_00046168-exon-scaffold_106-1575043694:295541..295918Clytia hemisphaericaexon
TCONS_00046168-exon-scaffold_106-1575043694:294151..295076TCONS_00046168-exon-scaffold_106-1575043694:294151..295076Clytia hemisphaericaexon
TCONS_00046168-exon-scaffold_106-1575043694:293855..294114TCONS_00046168-exon-scaffold_106-1575043694:293855..294114Clytia hemisphaericaexon
TCONS_00046168-exon-scaffold_106-1510915933:295541..295918TCONS_00046168-exon-scaffold_106-1510915933:295541..295918Clytia hemisphaericaexon
TCONS_00046168-exon-scaffold_106-1510915933:294151..295076TCONS_00046168-exon-scaffold_106-1510915933:294151..295076Clytia hemisphaericaexon
TCONS_00046168-exon-scaffold_106-1510915933:293855..294114TCONS_00046168-exon-scaffold_106-1510915933:293855..294114Clytia hemisphaericaexon
TCONS_00046168-exon-scaffold_106-1491911889:295541..295918TCONS_00046168-exon-scaffold_106-1491911889:295541..295918Clytia hemisphaericaexon
TCONS_00046168-exon-scaffold_106-1491911889:294151..295076TCONS_00046168-exon-scaffold_106-1491911889:294151..295076Clytia hemisphaericaexon
TCONS_00046168-exon-scaffold_106-1491911889:293855..294114TCONS_00046168-exon-scaffold_106-1491911889:293855..294114Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_106supercontigscaffold_106:293855..295918 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.471291	0.485115	0.0592911	0.174021	0.282472	0.223213	8.61752	8.4773	5.86896	3.96278	4.48302	2.16227	0.313441	0.18084	0.208145	0.143596	10.2404	12.4704	0.695823	0.378627	5.36679	5.37129	2.97205	2.48368	4.83515	3.48733	16.2994	9.04244	0.552157	0.562561
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006840ChaC
IPR013024GGCT-like
Vocabulary: Molecular Function
TermDefinition
GO:0003839gamma-glutamylcyclotransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006751glutathione catabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006751 glutathione catabolic process
molecular_function GO:0003839 gamma-glutamylcyclotransferase activity
Blast
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BLAST of TCONS_00046168 vs. Swiss-Prot (Human)
Match: CHAC1 (Glutathione-specific gamma-glutamylcyclotransferase 1 OS=Homo sapiens GN=CHAC1 PE=1 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 4.333e-46
Identity = 81/171 (47.37%), Postives = 107/171 (62.57%), Query Frame = 1 
Query:  214 IFGYGSLTWKPDFDYDRSFVGYVKGYERRFWQASTYHRGTKEHPGRCVTLTPVENGTTWGLVYEISDTSKIATALDYLNVREQKIGGYEVYVVPVHPLDSCDQKHEAMYSILYIATPECKGFLGEDSYDKLAGDIATSCGKIGHNIEYLFRLTDFMREFLPGEPDEHLYTL 726
            IFGYGSL W+PDF Y  S VG+V+GY RRFWQ  T+HRG+ + PGR VTL     G TWG+ Y++    +++ AL YLNVRE  +GGY+   V  +P D+ DQ  +A+    Y+ATP+  G+LG    + +A  I    G  GHN+EYL RL DFM+   P   DEHL  +
Sbjct:   77 IFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMPGRVVTLLEDHEGCTWGVAYQVQG-EQVSKALKYLNVREAVLGGYDTKEVTFYPQDAPDQPLKAL---AYVATPQNPGYLGPAPEEAIATQILACRGFSGHNLEYLLRLADFMQLCGPQAQDEHLAAI 243
The following BLAST results are available for this feature:
BLAST of TCONS_00046168 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHAC14.333e-4647.37Glutathione-specific gamma-glutamylcyclotransferas... [more]
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