TCONS_00046188 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046188
Unique NameTCONS_00046188
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1319

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046188 ID=TCONS_00046188|Name=TCONS_00046188|organism=Clytia hemisphaerica|type=transcript|length=1319bp
ATGAAGCATTACAACgcacaaaagaaaatgaaattaaagTggaaaatatt
gagaacaaaCCAAGTGTTGTGTCGCCAGGGCCTGAGCACAAGCCAAAGTC
ACCCAATATCaaagaatttaaagaaaaattaccaaaaatgaCAGGTCGAC
CATCAATTCCGTCTCTATCGCCACACCAAGCTTACTCACCGCCCTTCTAT
TACAGAAAACCAATATTCTTCAAGGAACCCCCTTCTGCATTCCAGATGTG
GGCACCTCATTTAACCAAAGCTCGATTCCACGGCTCACCTCGTGAAATGC
AACGATTCACGCCTTACCCATCACCACCTCCACCCACAGTGCCCTCTTCC
AGCGAATGTCATAGAGGCGTTGACCGCCCTTGTTACATCGATGAATACTG
CACTAAGAAATCTTTCGTATATCCTCCACCGGCCAACATGCGCCATGAAT
ACATCTCACACTCAAATCCAGTTTTCCAgtccaaaacaaaagaaccagTC
GATCTAAATAACAACAAGGCGACAACAAAAGGtccaaaatctccacatta
ttCACCAGTTGGTCGAATCTCACCGCAATCAAATAACGACCTATCTTCAC
CTTCATCGTACGGTCGACAGCGATCACCATTCATGGATCGTCGCTCTCCC
TCCTACATTGACCACCACGGTAGATCTCCATACGGCGAAAGACGATCTCC
TATTTATCTAGAGAGACGTTCTCCACCATCCTTCGATTCAAAACACTCTC
CAATTCCTGACAGATTTACCAAAGAAGGCGCATCGCCTACACCGGGAGTA
ACATCACCGAAAGACACTTCTAAAACAGACTCACATGCTAATACTCCATC
TATCGAAATGCTTGCAAGATTATTCCCACGACATCAAACAACCACTTTAA
AAAACGTCCTAAGCAACTGCAATAATGATCCTGTACGTGCAATTGAAGAA
ATTTTGGACAGAGTGCCAGCTGAAGataataacaacaacaataGCATCAA
TCAAAAACTTCCACCTGTCAAAAACACTTACTCAGCAAAACGAAATGAAC
CAATTATTGACAATAAACATGGAAGTAATGACGATCTATCAAATCTAGCA
AAAGCATTTGATATCCCAGTATCTGAGGAGAAAATTAGAAGTCCGAAAGT
TGTACACTGGTAACATAAAAAATCCTCTTGTATAATAAAATACTGTTCAG
CCTGAAATATTATGTATTTTTTTGTCTGTAAATACGCAACTCAATTGTAA
ATGATTAAATTATCAAACTtctaatttatgaaaaatataatttggcTTCA
CAAGCTGTATGTAAATAAT
Run BLAST on NCBI

transcript from alignment at scaffold_106:413931..417924-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046188 ID=TCONS_00046188|Name=TCONS_00046188|organism=Clytia hemisphaerica|type=transcript|length=3994bp|location=Sequence derived from alignment at scaffold_106:413931..417924- (Clytia hemisphaerica)
ATGAAGCATTACAACGCACAAAAGAAAATGAAATTAAAGGTAATGAAATT
TTTAATTTTTCAAAGTTTAAAATTTAATACAGTCAAGCAATATATCTCGG
TGGTATGGTGATACCACTCAAGCTTCTAAAAACAAAAACTTTAACAATAA
TTAATTTCAAATTTAATTTTAATTTTTCATTTCGATAGTTGTGAAAATAC
CTTGAAAGTGTTACATTTTACAAAACGTGTGCTGAAGCTCTGCCGTTACG
CATCTAATGCAATATGTTGGGAGGCATTTTGAAACTGGGGCTACTGGTGA
TCATTAAGGGATATCGAGCAAACATACATACACTGTGTAAACATGATTTC
TTATCAAATTTATCATCGGGTTAAATCAATTTTTGTATGTTCTGGCTGCT
GAGCTTTTTAAAGGCTCTTCATATATATGTTAATTTTTTTAAATTCTGAC
TTTGATCAAAGAATATTTCGGCGCGGTCTTTTTCCTACGATTGGGCGAAC
TCGATACAAATTTCCCTATCACGCAAACTACCGCAAACAAATAGAACATC
TGGCTCATCACTATTAGAATATTGAGAACACGTAGCAAAAATAAAATATA
CGAGAAATGTATATAAAAATATTTTTGTAACGAAAGACAAAAGCAAGGAT
AGGCCCCCGTGCAGTGAAAAAACGTAACAGCCGTTAGACGGGTTTTGTTG
ACAAAATAGTTTTCAAAAAGATGGAAGATGGTAAATTATATCGAAAATTT
TGTATTTTGTTTCAAAAAAAAAAGAAGAAGATATTTTTACAAAATTTCCT
TCAAGATGTTCACTGAGTAACTCAAAACAATGAAAAAATAATAAAAATGA
GGGGAAATAGAAACATCTAACAAAACAATTACTTTTTTATGACTTCATTT
CAATGTAGGCACAGCATGATTTATCAAACTTTTTCCAACGTTTATTTAAT
TTCTTTTTCTGGCTCCCCCCTGACAGCGTACTAGAAAATAAATAGGGTGC
AATATGTGCCATATTTGATGAAAATAACTCGCAAACGTTTTGTTTCAATA
TTGTAACAACAGTTTTTTTGTCAAAAAGGCACCCTATTGTGATGACGAGT
CATGTTGATAAAAATATTCCTTTTCATTATTTTAGTGGAGAACATTGAGA
ACAAACCAAGTGTTGTGTCGCCAGGGCCTGAGCACAAACCAAAGTCACCC
AATATCAAAGAATTTAAAGAAAAATTACCAAAGATGACAGGTACGTTGCC
CCTCCCAAAAGATTAATCAATTAAAGTCGCCTATTGTTTTTAGCTTTGTA
TTGTTCTTGTAAAGGTTCGAATGAAAGAAACGGTACAATATACAATAACT
ATTTAAAAGTTATCTTAGTATCTTTTTTTCTTGAATCCCCTGTTGTTTTT
CTTTTTTGCTTCGTGTTTCAAAGTGAAGCTACCTGACCAGATGTGAACAT
ATGCTTCAAATAATTTGCCATTGTTTTCTCCCTTCTTCACTTAACCCTTC
CTTTGTTTCTTTTGCCCAATTGGACATCTGAGGAGTAGGTTAATCGATAT
TTGAATATGTTTTATCCAGATTATCTCTCCACAAAGTCAAATTTGTTTAA
ACAAATTTGTTTCGATCTGTCAATGTTTCATTTTATTATATTTCTATCTC
TTATCCTTTTTTGTTTTGTTTTTCCTTTTGACAGGTCGACCATCAATTCC
GTCTCTATCGCCACACCAAGCTTACTCACCGCCCTTCTATTACAGAAAAC
CAATATTCTTCAAGGAACCCCCTTCTGCATTCCAGATGTGGGCACCTCAT
TTAACCAAAGGTACTAACAATTGTATTTAAATTTATCCGCAGAGAGTTTT
TTGTATCTAAATTAGATTCAGAAGTGAATATCGTCGCTCCAAGATAATTT
TCGACAACTGAGACCCCTTAAATATACGTGAAATTGACTTAAATTATTTT
TCAAGTCAAGGCTCTCGCTGATTAACCANGTCAAAAAGGCACCCTATTGT
GATGACGAGTCATGTTGATAAAAATATTCCTTTTCATTATTTTAGTGGAA
AATATTGAGAACAAACCAAGTGTTGTGTCGCCAGGGCCTGAGCACAAGCC
AAAGTCACCCAATATCAAAGAATTTAAAGAAAAATTACCAAAAATGACAG
GTACGTTGCCCCTCCCAAAAGATTAATCAATTAAAGTCGCCTATTGTTTT
TAGCTTTGTATTGTTCTTGTAAAGGTTCGAATGAAAGAAACGGTACAATA
TACAATAACTATTTAAAAGTTATCTTAGTATCTTTTTTTCTTGAATCCCC
TGTTGTTTTTCTTTTTTGCTTCGTGTTTCAAAGTGAAGCTACCTGACCAG
ATGTGAACATATGCTTCAAATAATTTGCCATTGTTTTCTCCCTTCTTCAC
TTAACCCTTCCTTTGTTTCTTTTGCCCAATTGGACATCTGAGGAGTAGGT
TAATCGATATTTGAATATGTTTTATCCAGATTATCTCTCCACAAAGTCAA
ATTTGTTTAAACAAATTTGTTTCGATCTGTCAATGTTTCATTTTATTATA
TTTCTATCTCTTATCCTTTTTTGTTTTGTTTTTCCTTTTGACAGGTCGAC
CATCAATTCCGTCTCTATCGCCACACCAAGCTTACTCACCGCCCTTCTAT
TACAGAAAACCAATATTCTTCAAGGAACCCCCTTCTGCATTCCAGATGTG
GGCACCTCATTTAACCAAAGGTACTAACAATTGTATTTAAATTTATCCGC
AGAGAGTTTTTTGTATCTAAATTAGATTCAGAAGTGAATATCGTCGCTCC
AAGATAATTTTCGACAACTGAGACCCCTTAAATATACGTGAAATTGACTT
AAATTATTTTTCAAGTCAAGGCTCTCGCTGATTAACCAACTCTTATGATT
CGCATAAATCAATCAATAACCAATACTATGATCCTAATATTACAGCTCGA
TTCCACGGCTCACCTCGTGAAATGCAACGATTCACGCCTTACCCATCACC
ACCTCCACCCACAGTGCCCTCTTCCAGCGAATGTCATAGAGGCGTTGACC
GCCCTTGTTACATCGATGAATACTGCACTAAGAAATCTTTCGTATATCCT
CCACCGGCCAACATGCGCCATGAATACATCTCACACTCAAATCCAGTTTT
CCAGTCCAAAACAAAAGAACCAGTCGATCTAAATAACAACAAGGCGACAA
CAAAAGGTCCAAAATCTCCACATTATTCACCAGTTGGTCGAATCTCACCG
CAATCAAATAACGACCTATCTTCACCTTCATCGTACGGTCGACAGCGATC
ACCATTCATGGATCGTCGCTCTCCCTCCTACATTGACCACCACGGTAGAT
CTCCATACGGCGAAAGACGATCTCCTATTTATCTAGAGAGACGTTCTCCA
CCATCCTTCGATTCAAAACACTCTCCAATTCCTGACAGATTTACCAAAGA
AGGCGCATCGCCTACACCGGGAGTAACATCACCGAAAGACACTTCTAAAA
CAGACTCACATGCTAATACTCCATCTATCGAAATGCTTGCAAGATTATTC
CCACGACATCAAACAACCACTTTAAAAAACGTCCTAAGCAACTGCAATAA
TGATCCTGTACGTGCAATTGAAGAAATTTTGGACAGAGTGCCAGCTGAAG
ATAATAACAACAACAATAGCATCAATCAAAAACTTCCACCTGTCAAAAAC
ACTTACTCAGCAAAACGAAATGAACCAATTATTGACAATAAACATGGAAG
TAATGACGATCTATCAAATCTAGCAAAAGCATTTGATATCCCAGTATCTG
AGGAGAAAATTAGAAGTCCGAAAGTTGTACACTGGTAACATAAAAAATCC
TCTTGTATAATAAAATACTGTTCAGCCTGAAATATTATGTATTTTTTTGT
CTGTAAATACGCAACTCAATTGTAAATGATTAAATTATCAAACTTCTAAT
TTATGAAAAATATAATTTGGCTTCACAAGCTGTATGTAAATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029498XLOC_029498Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046188-exon-scaffold_106-1575043694:417886..417924TCONS_00046188-exon-scaffold_106-1575043694:417886..417924Clytia hemisphaericaexon
TCONS_00046188-exon-scaffold_106-1575043694:415775..415879TCONS_00046188-exon-scaffold_106-1575043694:415775..415879Clytia hemisphaericaexon
TCONS_00046188-exon-scaffold_106-1575043694:415205..415330TCONS_00046188-exon-scaffold_106-1575043694:415205..415330Clytia hemisphaericaexon
TCONS_00046188-exon-scaffold_106-1575043694:413931..414979TCONS_00046188-exon-scaffold_106-1575043694:413931..414979Clytia hemisphaericaexon
TCONS_00046188-exon-scaffold_106-1510915933:417886..417924TCONS_00046188-exon-scaffold_106-1510915933:417886..417924Clytia hemisphaericaexon
TCONS_00046188-exon-scaffold_106-1510915933:415775..415879TCONS_00046188-exon-scaffold_106-1510915933:415775..415879Clytia hemisphaericaexon
TCONS_00046188-exon-scaffold_106-1510915933:415205..415330TCONS_00046188-exon-scaffold_106-1510915933:415205..415330Clytia hemisphaericaexon
TCONS_00046188-exon-scaffold_106-1510915933:413931..414979TCONS_00046188-exon-scaffold_106-1510915933:413931..414979Clytia hemisphaericaexon
TCONS_00046188-exon-scaffold_106-1491911889:417886..417924TCONS_00046188-exon-scaffold_106-1491911889:417886..417924Clytia hemisphaericaexon
TCONS_00046188-exon-scaffold_106-1491911889:415775..415879TCONS_00046188-exon-scaffold_106-1491911889:415775..415879Clytia hemisphaericaexon
TCONS_00046188-exon-scaffold_106-1491911889:415205..415330TCONS_00046188-exon-scaffold_106-1491911889:415205..415330Clytia hemisphaericaexon
TCONS_00046188-exon-scaffold_106-1491911889:413931..414979TCONS_00046188-exon-scaffold_106-1491911889:413931..414979Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_106supercontigscaffold_106:413931..417924 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0333611	0	0	0	0	0.19235	0	0	0	0	0	0	0	0	0	0	0	0	1.0044e-08	0.643437	0.226162	0	0	5.82563e-07	0.229786	0	0.0236527	0.0321436
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046188 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top