TCONS_00046189 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046189
Unique NameTCONS_00046189
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1321

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046189 ID=TCONS_00046189|Name=TCONS_00046189|organism=Clytia hemisphaerica|type=transcript|length=1321bp
TAATGAAGCATTACAACgcacaaaagaaaatgaaattaaagTGGAGAACA
TTGAGAACAAACCAAGTGTTGTGTCGCCAGGGCCTGAGCACAAACCAAAG
TCACCCAATATCaaagaatttaaagaaaaattaccaAAGATGACAGGTCG
ACCATCAATTCCGTCTCTATCGCCACACCAAGCTTACTCACCGCCCTTCT
ATTACAGAAAACCAATATTCTTCAAGGAACCCCCTTCTGCATTCCAGATG
TGGGCACCTCATTTAACCAAAGCTCGATTCCACGGCTCACCTCGTGAAAT
GCAACGATTCACGCCTTACCCATCACCACCTCCACCCACAGTGCCCTCTT
CCAGCGAATGTCATAGAGGCGTTGACCGCCCTTGTTACATCGATGAATAC
TGCACTAAGAAATCTTTCGTATATCCTCCACCGGCCAACATGCGCCATGA
ATACATCTCACACTCAAATCCAGTTTTCCAgtccaaaacaaaagaaccag
TCGATCTAAATAACAACAAGGCGACAACAAAAGGtccaaaatctccacat
tattCACCAGTTGGTCGAATCTCACCGCAATCAAATAACGACCTATCTTC
ACCTTCATCGTACGGTCGACAGCGATCACCATTCATGGATCGTCGCTCTC
CCTCCTACATTGACCACCACGGTAGATCTCCATACGGCGAAAGACGATCT
CCTATTTATCTAGAGAGACGTTCTCCACCATCCTTCGATTCAAAACACTC
TCCAATTCCTGACAGATTTACCAAAGAAGGCGCATCGCCTACACCGGGAG
TAACATCACCGAAAGACACTTCTAAAACAGACTCACATGCTAATACTCCA
TCTATCGAAATGCTTGCAAGATTATTCCCACGACATCAAACAACCACTTT
AAAAAACGTCCTAAGCAACTGCAATAATGATCCTGTACGTGCAATTGAAG
AAATTTTGGACAGAGTGCCAGCTGAAGataataacaacaacaataGCATC
AATCAAAAACTTCCACCTGTCAAAAACACTTACTCAGCAAAACGAAATGA
ACCAATTATTGACAATAAACATGGAAGTAATGACGATCTATCAAATCTAG
CAAAAGCATTTGATATCCCAGTATCTGAGGAGAAAATTAGAAGTCCGAAA
GTTGTACACTGGTAACATAAAAAATCCTCTTGTATAATAAAATACTGTTC
AGCCTGAAATATTATGTATTTTTTTGTCTGTAAATACGCAACTCAATTGT
AAATGATTAAATTATCAAACTtctaatttatgaaaaatataatttggcTT
CACAAGCTGTATGTAAATAAT
Run BLAST on NCBI

transcript from alignment at scaffold_106:413931..417926-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046189 ID=TCONS_00046189|Name=TCONS_00046189|organism=Clytia hemisphaerica|type=transcript|length=3996bp|location=Sequence derived from alignment at scaffold_106:413931..417926- (Clytia hemisphaerica)
TAATGAAGCATTACAACGCACAAAAGAAAATGAAATTAAAGGTAATGAAA
TTTTTAATTTTTCAAAGTTTAAAATTTAATACAGTCAAGCAATATATCTC
GGTGGTATGGTGATACCACTCAAGCTTCTAAAAACAAAAACTTTAACAAT
AATTAATTTCAAATTTAATTTTAATTTTTCATTTCGATAGTTGTGAAAAT
ACCTTGAAAGTGTTACATTTTACAAAACGTGTGCTGAAGCTCTGCCGTTA
CGCATCTAATGCAATATGTTGGGAGGCATTTTGAAACTGGGGCTACTGGT
GATCATTAAGGGATATCGAGCAAACATACATACACTGTGTAAACATGATT
TCTTATCAAATTTATCATCGGGTTAAATCAATTTTTGTATGTTCTGGCTG
CTGAGCTTTTTAAAGGCTCTTCATATATATGTTAATTTTTTTAAATTCTG
ACTTTGATCAAAGAATATTTCGGCGCGGTCTTTTTCCTACGATTGGGCGA
ACTCGATACAAATTTCCCTATCACGCAAACTACCGCAAACAAATAGAACA
TCTGGCTCATCACTATTAGAATATTGAGAACACGTAGCAAAAATAAAATA
TACGAGAAATGTATATAAAAATATTTTTGTAACGAAAGACAAAAGCAAGG
ATAGGCCCCCGTGCAGTGAAAAAACGTAACAGCCGTTAGACGGGTTTTGT
TGACAAAATAGTTTTCAAAAAGATGGAAGATGGTAAATTATATCGAAAAT
TTTGTATTTTGTTTCAAAAAAAAAAGAAGAAGATATTTTTACAAAATTTC
CTTCAAGATGTTCACTGAGTAACTCAAAACAATGAAAAAATAATAAAAAT
GAGGGGAAATAGAAACATCTAACAAAACAATTACTTTTTTATGACTTCAT
TTCAATGTAGGCACAGCATGATTTATCAAACTTTTTCCAACGTTTATTTA
ATTTCTTTTTCTGGCTCCCCCCTGACAGCGTACTAGAAAATAAATAGGGT
GCAATATGTGCCATATTTGATGAAAATAACTCGCAAACGTTTTGTTTCAA
TATTGTAACAACAGTTTTTTTGTCAAAAAGGCACCCTATTGTGATGACGA
GTCATGTTGATAAAAATATTCCTTTTCATTATTTTAGTGGAGAACATTGA
GAACAAACCAAGTGTTGTGTCGCCAGGGCCTGAGCACAAACCAAAGTCAC
CCAATATCAAAGAATTTAAAGAAAAATTACCAAAGATGACAGGTACGTTG
CCCCTCCCAAAAGATTAATCAATTAAAGTCGCCTATTGTTTTTAGCTTTG
TATTGTTCTTGTAAAGGTTCGAATGAAAGAAACGGTACAATATACAATAA
CTATTTAAAAGTTATCTTAGTATCTTTTTTTCTTGAATCCCCTGTTGTTT
TTCTTTTTTGCTTCGTGTTTCAAAGTGAAGCTACCTGACCAGATGTGAAC
ATATGCTTCAAATAATTTGCCATTGTTTTCTCCCTTCTTCACTTAACCCT
TCCTTTGTTTCTTTTGCCCAATTGGACATCTGAGGAGTAGGTTAATCGAT
ATTTGAATATGTTTTATCCAGATTATCTCTCCACAAAGTCAAATTTGTTT
AAACAAATTTGTTTCGATCTGTCAATGTTTCATTTTATTATATTTCTATC
TCTTATCCTTTTTTGTTTTGTTTTTCCTTTTGACAGGTCGACCATCAATT
CCGTCTCTATCGCCACACCAAGCTTACTCACCGCCCTTCTATTACAGAAA
ACCAATATTCTTCAAGGAACCCCCTTCTGCATTCCAGATGTGGGCACCTC
ATTTAACCAAAGGTACTAACAATTGTATTTAAATTTATCCGCAGAGAGTT
TTTTGTATCTAAATTAGATTCAGAAGTGAATATCGTCGCTCCAAGATAAT
TTTCGACAACTGAGACCCCTTAAATATACGTGAAATTGACTTAAATTATT
TTTCAAGTCAAGGCTCTCGCTGATTAACCANGTCAAAAAGGCACCCTATT
GTGATGACGAGTCATGTTGATAAAAATATTCCTTTTCATTATTTTAGTGG
AAAATATTGAGAACAAACCAAGTGTTGTGTCGCCAGGGCCTGAGCACAAG
CCAAAGTCACCCAATATCAAAGAATTTAAAGAAAAATTACCAAAAATGAC
AGGTACGTTGCCCCTCCCAAAAGATTAATCAATTAAAGTCGCCTATTGTT
TTTAGCTTTGTATTGTTCTTGTAAAGGTTCGAATGAAAGAAACGGTACAA
TATACAATAACTATTTAAAAGTTATCTTAGTATCTTTTTTTCTTGAATCC
CCTGTTGTTTTTCTTTTTTGCTTCGTGTTTCAAAGTGAAGCTACCTGACC
AGATGTGAACATATGCTTCAAATAATTTGCCATTGTTTTCTCCCTTCTTC
ACTTAACCCTTCCTTTGTTTCTTTTGCCCAATTGGACATCTGAGGAGTAG
GTTAATCGATATTTGAATATGTTTTATCCAGATTATCTCTCCACAAAGTC
AAATTTGTTTAAACAAATTTGTTTCGATCTGTCAATGTTTCATTTTATTA
TATTTCTATCTCTTATCCTTTTTTGTTTTGTTTTTCCTTTTGACAGGTCG
ACCATCAATTCCGTCTCTATCGCCACACCAAGCTTACTCACCGCCCTTCT
ATTACAGAAAACCAATATTCTTCAAGGAACCCCCTTCTGCATTCCAGATG
TGGGCACCTCATTTAACCAAAGGTACTAACAATTGTATTTAAATTTATCC
GCAGAGAGTTTTTTGTATCTAAATTAGATTCAGAAGTGAATATCGTCGCT
CCAAGATAATTTTCGACAACTGAGACCCCTTAAATATACGTGAAATTGAC
TTAAATTATTTTTCAAGTCAAGGCTCTCGCTGATTAACCAACTCTTATGA
TTCGCATAAATCAATCAATAACCAATACTATGATCCTAATATTACAGCTC
GATTCCACGGCTCACCTCGTGAAATGCAACGATTCACGCCTTACCCATCA
CCACCTCCACCCACAGTGCCCTCTTCCAGCGAATGTCATAGAGGCGTTGA
CCGCCCTTGTTACATCGATGAATACTGCACTAAGAAATCTTTCGTATATC
CTCCACCGGCCAACATGCGCCATGAATACATCTCACACTCAAATCCAGTT
TTCCAGTCCAAAACAAAAGAACCAGTCGATCTAAATAACAACAAGGCGAC
AACAAAAGGTCCAAAATCTCCACATTATTCACCAGTTGGTCGAATCTCAC
CGCAATCAAATAACGACCTATCTTCACCTTCATCGTACGGTCGACAGCGA
TCACCATTCATGGATCGTCGCTCTCCCTCCTACATTGACCACCACGGTAG
ATCTCCATACGGCGAAAGACGATCTCCTATTTATCTAGAGAGACGTTCTC
CACCATCCTTCGATTCAAAACACTCTCCAATTCCTGACAGATTTACCAAA
GAAGGCGCATCGCCTACACCGGGAGTAACATCACCGAAAGACACTTCTAA
AACAGACTCACATGCTAATACTCCATCTATCGAAATGCTTGCAAGATTAT
TCCCACGACATCAAACAACCACTTTAAAAAACGTCCTAAGCAACTGCAAT
AATGATCCTGTACGTGCAATTGAAGAAATTTTGGACAGAGTGCCAGCTGA
AGATAATAACAACAACAATAGCATCAATCAAAAACTTCCACCTGTCAAAA
ACACTTACTCAGCAAAACGAAATGAACCAATTATTGACAATAAACATGGA
AGTAATGACGATCTATCAAATCTAGCAAAAGCATTTGATATCCCAGTATC
TGAGGAGAAAATTAGAAGTCCGAAAGTTGTACACTGGTAACATAAAAAAT
CCTCTTGTATAATAAAATACTGTTCAGCCTGAAATATTATGTATTTTTTT
GTCTGTAAATACGCAACTCAATTGTAAATGATTAAATTATCAAACTTCTA
ATTTATGAAAAATATAATTTGGCTTCACAAGCTGTATGTAAATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029498XLOC_029498Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046189-exon-scaffold_106-1575043694:417886..417926TCONS_00046189-exon-scaffold_106-1575043694:417886..417926Clytia hemisphaericaexon
TCONS_00046189-exon-scaffold_106-1575043694:416685..416789TCONS_00046189-exon-scaffold_106-1575043694:416685..416789Clytia hemisphaericaexon
TCONS_00046189-exon-scaffold_106-1575043694:415205..415330TCONS_00046189-exon-scaffold_106-1575043694:415205..415330Clytia hemisphaericaexon
TCONS_00046189-exon-scaffold_106-1575043694:413931..414979TCONS_00046189-exon-scaffold_106-1575043694:413931..414979Clytia hemisphaericaexon
TCONS_00046189-exon-scaffold_106-1510915933:417886..417926TCONS_00046189-exon-scaffold_106-1510915933:417886..417926Clytia hemisphaericaexon
TCONS_00046189-exon-scaffold_106-1510915933:416685..416789TCONS_00046189-exon-scaffold_106-1510915933:416685..416789Clytia hemisphaericaexon
TCONS_00046189-exon-scaffold_106-1510915933:415205..415330TCONS_00046189-exon-scaffold_106-1510915933:415205..415330Clytia hemisphaericaexon
TCONS_00046189-exon-scaffold_106-1510915933:413931..414979TCONS_00046189-exon-scaffold_106-1510915933:413931..414979Clytia hemisphaericaexon
TCONS_00046189-exon-scaffold_106-1491911889:417886..417926TCONS_00046189-exon-scaffold_106-1491911889:417886..417926Clytia hemisphaericaexon
TCONS_00046189-exon-scaffold_106-1491911889:416685..416789TCONS_00046189-exon-scaffold_106-1491911889:416685..416789Clytia hemisphaericaexon
TCONS_00046189-exon-scaffold_106-1491911889:415205..415330TCONS_00046189-exon-scaffold_106-1491911889:415205..415330Clytia hemisphaericaexon
TCONS_00046189-exon-scaffold_106-1491911889:413931..414979TCONS_00046189-exon-scaffold_106-1491911889:413931..414979Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_106supercontigscaffold_106:413931..417926 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.00282227	0	0	0	0	0	0	0	0	0	0	0.208871	0	0	0	0	0	0	0	0	0	0.0995406	0	0	0	0.888943	0	0.00399006
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046189 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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