TCONS_00046227 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046227
Unique NameTCONS_00046227
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1239

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046227 ID=TCONS_00046227|Name=TCONS_00046227|organism=Clytia hemisphaerica|type=transcript|length=1239bp
ccccaaaaaacaaaaatgcttcctacggcactgtaatATTTCCACTGAAA
AATTGTAAGTACAATTTCAAACCAATCGAATACTATATCAACCAGCACGT
CCCCACCACAACACCATACACTTATATTATGAATCTGATATGAAAAAATT
AGCCATAGTACTTTTCTTANTTTCTGatcgttgaaaaataaagaaaaaga
aagtagagagtctaagctttccgttgatatataatgatgtaatgttatga
TCACGGTGTGAGACAagcacttttcaaataaaaacactgattcaaaatgg
cagacggaaaaacactgattttggaGAAGAGTGAACAATGTTTGAAAAGC
CCTTGTGACCAGTAGAATTGTTTTTGGATGCTAATTTTTGGTATATGGCT
TCATGAGTATGTGATGTATTGTCTACAACGTTGAATCAAGAAAAAACAGT
AGTGGTGCTTGCATTGATTTCACTTTTCTCCTCCTGCATGGGCCATTCAG
TCGTTAACGTTAAGAGGGGATGGAGAGAGGAGGTTGTGCTCTGGATAATG
ATAAGTCAGGGAACAGgtcGAGGAAAAACTCCTTTAAGGAAATTCCTTAA
AGGAATACTTGACGAGGTTATGAAGAAGGTGGATCTAAACCCCATGAGAA
AAGGAAGGACGGTGGTGTTGAAGAATTGTTCTTGGGATAAATTGGGTGAG
TTAATGGCTGCGAATGGCTCTAGGATTTTTGCACTTCAAGACGAAGTTAT
GGGATTTTTCACTGCGCACGGGATTCTTTCTCAATCGACAAAGATTGCCG
AAGGACGACAACTTCGTGACTTTCTCACCTTATACGACGGTGGTGAACTA
AACCGCGAGACTGTCACAGGGAATTGCAATTATAACATGCAAACGTCGCA
GTTCAACTTTTTTGGTTTAAATCAGCCAACTATGTCTTACAGCATCATTA
GAGATGAATATGGAATATCTGTTGGTTTTCAAAATAGGTATATTGTTTAg
ctaattaaatattttgctttagATAGGGAAATATTTCTTAAAACGGGCTT
TTTTGGGGGTATTTTTAAAAACTAATGCACAAAATGACCCAGGGCCAGGA
TCAAAAAATGTAAACTGGTATGTATGATAGCATCATATACAAATTGAAGG
CATCAGACCACTTAGTGTGTCGAATTATTGCCTTCAACATACACATCCTG
TACAATAACATATATGCCTGTATAGAATAATCGACCTCA
Run BLAST on NCBI

protein sequence of TCONS_00046227-protein

>TCONS_00046227-protein ID=TCONS_00046227-protein|Name=TCONS_00046227-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
MGHSVVNVKRGWREEVVLWIMISQGTGRGKTPLRKFLKGILDEVMKKVDL
NPMRKGRTVVLKNCSWDKLGELMAANGSRIFALQDEVMGFFTAHGILSQS
TKIAEGRQLRDFLTLYDGGELNRETVTGNCNYNMQTSQFNFFGLNQPTMS
YSIIRDEYGISVGFQNRYIV
Run BLAST on NCBI

transcript from alignment at scaffold_107:7165..20019-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046227 ID=TCONS_00046227|Name=TCONS_00046227|organism=Clytia hemisphaerica|type=transcript|length=12855bp|location=Sequence derived from alignment at scaffold_107:7165..20019- (Clytia hemisphaerica)
CCCCAAAAAACAAAAATGCTTCCTACGGCACTGTAATATTTCCACTGAAA
AATTGTAAGTACAATTTCAAACCAATCGAATACTATATCAACCAGCACGT
CCCCACCACAACACCATACACTTATATTATGAATCTGATATGAAAAAATT
AGCCATAGTACTTTTCTTANTTTCTGATCGTTGAAAAATAAAGAAAAAGA
AAGTAGAGAGTCTAAGCTTTCCGTTGATATATAATGATGTAATGTTATGA
TCACGGTGTGAGACAAGCACTTTTCAAATAAAAACACTGATTCAAAATGG
CAGACGGAAAAACACTGATTTTGGAGAAGAGTGAACAATGTTTGAAAAGC
CCTTGTGACCAGTAGAATTGTTTTTGGATGCTAATTTTTGGTATATGGCT
TCATGAGTAAGTATATATTGATAAAATAGTAANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNAGTGAAAAATGCCAAAAAAGTGACATTGTCGAAAAATGAGGAAAAA
AGCATTGGTGTATGTAAAGCTACCATTTAAGTTAGAATACTTTAATTGAA
CTTGTACCCACAACCTAAAAGCTGCAAAACTTAATTAATCCTTTTCAGGG
ATAGTTTACTTTTTGCCCAAAGATTTCTAGTTCTTGAGTTTATGGCAAAT
TTCCCAAACCCCGCGTTTTCTCAAAAAAAGTTGCGCGCAGACAGCGTGAA
AATATAAAAAACAGCGCGCTGGAAAGGTTAAATATATCGGCAATAGAGAA
AACATTTTTTTAAACCCTTCGGCAAAGGGAGTGAAAATTCAAATGTCGGA
TATATCCGACATCGGCACGGAAAGGGTAAACAAAATGATGTGCGGAGTTA
AGTACGTAACGTCCGTAACCTGATATTCAGATGGTGATATTTTCTATCGG
TACGCTAAAGCTCTAAAGACACGATGAAAATATACCATCTGACGAATTTG
ACTTGTGTTTTTTGGCGGGGACCGCGCTATTTTGGAGTCCGCGCACGAAC
TAAAAACAATCACGAAATTTCAAATGGAGTGCCGAAAGGAGAAAAAGTAT
AATATTGAGCAGGTTACCCAATATGGACCCCAATTGAAAATTTTCTCCTC
GTCGGTGACTAAGGAGGCGCAACTTAGATTTGTACCGGTACAAATCTAAG
TTGCGCCTCCTTAGTCACTATATTCGCTAGGAATTACAGTATAATCTCGT
TAAGTAATACATTGGACCGGCTAAATACCGTATTACTACTTAGCCGCGTG
TACCACTTTAGTCTGGATATCCATACTACTATGTTACAAAAATATCACTA
ATAATGTAAGAAACCAAAAAAGTTACTGAAATACAGAGTATGGTATTATT
ACTGATACAATTCAAATCATTAAGGAAAACGACCGTTAATTTTTGAAAAC
AGCTAATCTGTTATTTACCTTTTCCCCATTTACTCCTTAGTTCTAAGTAC
GCTAGCTATGTACAAACAGAAGTGACAGGTTTCCTAGCTAGTACTACTTA
TATATCTGAATCTCCTCGTGACACGTGAGTAAGAAATTTGTCAAAAAGCT
CAATTTGTCCTATTTATCAAGATTTGCCCTAGATGTGGCAATCTGATCCG
TCTCTAACCTATACTTAAACTACTCAACGGAATTTTTCAGGTTCAGACTA
AACACACCTTTTAAAATTTTGTATACAAAAAATTTCGAAAACTTTCAGCG
AAATATTGCATTGTCTTCAATCTTGGAAAAAAAATAAAAAGATGTCCCAC
TTATCCGAGTTTTTCAGTTTTTGTCTCAAGGGACCGAAAGTGTCATGAAG
GCCCAGCTTTAACCCTTTACAGGGTGGCGTTGCCGCGTATTTTTTTCCGT
AGACGGTCGAAAAGATCCTTGATGGTCGGGAAAGTCCAAAACTTAGAAAT
ATTTTCAAAACCGTAGAACCGGGGTTAATTCTACGGTTTTGAAAATATTT
CTAAGTTTTGGACTTTCCCGACCATCAACTCGAGACCACTAAAGTACTTT
TGTCAATGATTCTGAACCTGCCTCGCTAACCACTAGGCTACCGAACTGCT
GTCAAACTACGCAATTTCAAACAATTTAAAGAACGACAAATATCTATATA
GGTATTCTAACCGTAACGAGTAAGGCTAACTGTCTATAACTCAATAGTAC
CCACACACCTGCACTAGTGCATACATGGGCGTGGGTGCAACGCCGGCCAG
TTGCGCTAGGATTTTTCCGACCATTAAAAGATTTTTCTGACCATGAAAGA
TTTTTCCAAACGTATACAGAAAAAATTAGGCGGCGTTGCCATATGACAAC
AAAATATTTCTGCTCTTGTTAGCCAATTCCGGTGCGTAATACCGTGTTGG
TTGTTTTTTTCGCATTCGCTTTTATAGTACGCTTACAAATATTAAAGGCA
ATCGATCGAGGTTTCTAGCCATCTAATATTTACCTGATACTCAGATGGTG
AATTTTCTATCGGTACGCTAAAGCTCTAAAGACACAATGCAAATAACCAT
CTGAGGAATTACACAGTAGCTAGTGATACAACTTTTTGAATTGCGCCATT
CTGCTCAAAATTGTATTTTTTCTCCTTTCGGCGCTCCATTTGAAATTTCG
TGATTGTTTTTAGTTCGTGCCCGGACTCCAAAATAGTGCGGTCCCTGCAA
AGAACACAAGTCAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNAGTGAAAAATGCCAAAAAAGTGACATTGTC
GAAAAATGAGGAAAAAAGCATTGGTGTATGTAAAGCTACCATTTAAGTTA
GAATACTTTAATTGAACTTGTACCCACAACCTAAAAGCTGCAAAACTTAA
TTAATCCTTTTCAGGGATAGCTTACTTTTTGTCTTCAATCTTGGAAAAAA
AACAAAAAGATGTCCCACTTATCCGAGTTTTTCAGTTTTTGTCTCAAGGG
ACCAAAAGTGTCATGAAGTCCCAGCTTTAACCCTTTACAGGGTGGCGTTG
CCGCGTATTTTTTTCCGTAGACGGTCGAAAAGATCCTTGATGGTCGGGAA
AGTCCAAAACTTAGAAATATTTTCAAAACCGTAGAACCGGGGTTAATTCT
ACGGTTTTGAAAATATTTCTAAGTTTTGGACTTTCCCGACCATCAACTCG
AGACCACTAAAGTACTTTTGTCAATGATTCTGAACCTGCCTCGCTAACCA
CTAGGCTACCGAACTGCTGTCAAACTACGCAATTTCAAACAATTTAAAGA
ACGACAAATATCTATATAGGTATTCTAACCGTAACGAGTAAGGCTAACTG
TCTATAACTCAATAGTACCCACACACCTGCACTAGTGCATACATGGGCGT
GGGTGCAACGCCGGCCAGTTGCGCTAGGATTTTTCCGACCATTAAAAGAT
TTTTCTGACCATGAAAGATTTTTCCAAACGTATACAGAAAAAATTAGGCG
GCGTTGCCATATGACAACAAAATATTTCTGCTCTTGTTAGCCAATTCCGG
TGCGTAATACCGTGTTGGTTGTTTTTTTCGCATTCGCTTTTATAGTACGC
TTACAAATATTAAAGGCAATCGATCGAGGTTTCTAGCCATCTAATATTTA
CCTGATACTCAGATGGTGAATTTTCTATCGGTACGCTAAAGCTCTAAAGA
CACAATGCAAATAACCATCTGAGGAATTACACAGTAGCTAGTGATACAAC
TTTTTGAATTGCGCCATTCTGCTCAAAATTGTATTTTTTCTCCTTTCGGC
GCTCCATTTGAAATTTCGTGATTGTTTTTAGTTCGTGCCCGGACTCCAAA
ATAGTGCGGTCCCTGCAAAGAACACAAGTCAAATTCGTCAGATGGTATAT
TTTCATCGTGTCTTTAGAGTTTTAGCGTACCGATAAAAAATATCACCATC
TGAATATCAGGTTATCTAATATCAGTCCGACTACCGATTAAAAAAATTGA
CAATAACGCGCGTTACATCAGTTTATTGTTTATAGCTAACAATAAAAGTG
TTCTTTTTGTTATCACAAAAGTGAAGTCCAGAAAACTTGCAATGCTTATT
GCAAATAACAAACATTGGAATAAAAAGTATGTGTTTTTTCAACGTTCTTG
CTTTTAACTGCTAACGCGCTGCTGACTCAGTATATGGTATATTAACCGAT
CGATTGCCTTTAAATAATTTTATCGAAATATCCAAAAAAAAGATTAATTT
GTTTCTTATAAAGCGATGCTTATAAATAAAATAATTATGCTCACATTCTT
CTCCATTCCTTAATTACTTTGTAATATCTTGTCATCGACAAGAAATAATA
TTTAGATCAAGAGTTAGTGATCAATCAGTGAACATTCAAGATTTTATGTG
TTTCGCAGAATTTAATTTCGCGGTTGACACTCAAAACCGCGAAATTACTT
CCGCAAAAATTTCTTCCCTCAAGGTATATTAGTTTATGATGGGAAATACA
TTCATTTGAAACTTCTTAGCTTGAAACAAATATCCATGCCTAACAACTTT
TATGGTCGCATATCAGAACTATCGAAATTGCCAGTTTTGGGAATCACGGT
AAATCTTAAAGACTGTGGTAGGACCCATCTGACTGTGGGACCTTATAGGA
TGCCGGAAGGAGGAGGGTGTAGTACCGGGTATGTGCGAGTGATGAGGGTC
CCTTTTTCAGATTTGTAAAGTCTCTCAAAGGGTTACAAAAACACGAAAGT
TAAATTTTTGTTTCTCAAAAGTTCAGGATTTTGAATATTTTGAGCAAAAA
TTTTCAATTTCAATTAAAAGGCAACAATTTGGAAAAATGTCTCTCTCAGC
ACGGTCGCTTTTTTCACACGTTCTTGAAAGATTTGTCAAAAACCAGTCTC
TCTAAGGTCGGGTTTCGGAGGTCAGGGCCACACATACCCAACATCCCTGA
AACCTAGTACCCCCTAGTACGATATTGATTCTTCAGGGGTGGATTGAGAC
AAAATAAATTGGTTTAGTTGATGGAATCCATATATTTTTATTTACAGGTA
TGTGATGTATTGTCTACAACGTTGAATCAAGAAAAAACAGTAGTGGTGCT
TGCATTGATTTCACTTTTCTCCTCCTGCATGGGCCATTCAGTCGTTAACG
TTAAGAGGGGATGGAGAGAGGAGGTTGTGCTCTGGATAATGATAAGTCAG
GGAACAGGTATGCTTAATCACTTAATCTTATTTTACACCCCTGTATCACA
GTCCCGTTGGGATTTCTAGCAAATAAAAAATAGGACTAAAAATCGTCCCG
TTGGAAAATACACTCAATTTAGAATTTTTATCTCTATCGGTATCCCCACT
AGAAAAATGTCACATTAAGTTTTTCTAGTAGATAGCAATATAATACAATT
ATTCTCCAGTAAAAGTTTATACGATAAGTGTACACTCTTTTTTGTTTTGA
TTATCATTTCTAGTGCCTCAATTATAACAAATTTGGTAATGTGGAAAAGT
AGTAAAAAGCACTTCTTTTAATTTTTCCAAAAATTTGCTGAATCCTAAAA
TATTCTTAAGTGATAACATTTGAAAAAATATATAAAGGTCACTATTTTTT
TATTATTTTGGAGAAAAAATTAAAATCAAAGTGTCAAACTTGATATTCGT
GTTTCGTAAATTAAGGTTGCCATATTGAGGGCGATGATTGCTCTTTATCT
CAGATACTTTAGGTAGTGGTTTAAAATGTTTACATTTATAACAGTGACGT
CATTTCAGTGTGTTTCACAACCCCGGACGAAAGGTTGTAGACTTGTGCAA
AATAGCAGAAAATTACCGGTGTCGCAGTATAACTTCCCCTTTAACCCTGC
GTGTTGCTTTTGAAAGGTGTTTGTTTACATAAGCTATAGCTGACCTTATT
TACATCAGCTTTGAAGAAAAGGAGTTTATTTCTAAAAGTCTACTCAACGT
TTAATATCTTAATAAAACTGGCGCACTATATCCTAGGGTTTTATATAGGG
GTTTATAATTTTCTTATTAGCTATTGAAAGAATCATCAAATTTCTTTTTT
TCATTTTAGGTCGAGGAAAAACTCCTTTAAGGAAATTCCTTAAAGGAATA
CTTGACGAGGTTATGAAGAAGGTGGATCTAAACCCCATGAGAAAAGGAAG
GACGGTGGTGTTGAAGAATTGTTCTTGGGTAAGTAAATGTATTATCTTTG
TATCATTGAAACTTAATAAAATACAACCTCATATTGATCAATAAACCCAG
GGGGTATTGGGGTACTAGGGTTGACGGATGCTAGGTATGTGCGGATCGGA
CCCCCGAAACTGGAATATTAGAGAGACTGATTTCGAGGAATTTTGACAAT
TTTTTACGAAAAAAGGGAGCCTTAGAGAGACTTTTTCCTATTTTTTTCCT
CAATTTAAATTTTTCTTCTTCCAAAAATTCTAAAAATAGTGGCCCTTAGA
GAGACAAATCTGAATTTTTATCAAAAAGAGTGACCCTTAGAGANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGATG
CATTTGCGCTGATTTCATCAAAATATTTTTCTTCTTCATCAAAACATTCG
AATTTTGATCTAAAAATCTCATCAAAATAGTTTTGATGGATTTTGATTAA
AAATTTTTGATGTGTCACAGGAAAAAAGTACTGCCCAGTACTTACTTATT
TCCCGGATATAAGTACTCCCGAATTAATATTTATAGGACCTCCAGGTAGG
ACCAAAAACCTTAGAATTTATTGAAAAGTGCAGTGGAGGGTCTTCTTTGT
TCGGGATGTACATTTTTCTTAGGAAAAAAGTACTCCCGGAGTACTTTTTT
CCAGGGAGTACTTACTTTAATCGTAGAAATTTTAGCGAGACTAATTTTAG
CGTATATTAGCGAGTCTGGAAAATCTTGATTTCTTTTTGGAGTGAGTCAC
GATTTCAAAAAATTTCGCGTGGATAAATTTTAGCGAATACTCGTCTGAGA
AAATTTCGCGTGGATTAATTTTAGCGAATCGCCATTTCCAAAAAACTTTT
CGAGATATATTTTGGTGAAAGTTCAAGATATAACGGAGGTTCGAGATAAG
CGCGTGTTTTTAAGCCTACATTTTCTTACAGAACTCTAAAATAAATACTT
TTATTAGTTTTCGCAAAAATCGTAAAAAAAAGAAGAAAAAAACTGGATTT
ATTTTTAGCGAATTGCGTTTTTGAAAAATTTAGTTAGAATNCCCGTGGGA
AATAAGCCCATGGCAACCTAGAACATGACTACTGAAAGATATATAATAAA
TACAAACACGAAAATATAGATAAGCCTACTTCTACTACTTCTCCAAATTA
TGCATCTTGATATAAAAAATACTACTTTGTTTTACAAAAACGTAAGAGAA
CAAATAAACAATTAAGTTTCTACGTTTCTCTACTACTCCTTTTTAATTAA
CGAAATTAAATAAACGCACAAAATTATTACATCATTAACCTGCACTATAC
CAAATAGTTAAGGTCCTTTTAAGCACTTCTGGTTCTCTTCATATAAAATT
AGTTTGCTTTGAATTTTTTTTTTACAAAAACCTCCAGACCCCGGTGGTCA
AAATTGGGTGCTCCGACTGTCTCAATCTATTTATTTTTACTGAGCTGTCA
TAGAGGAAACCGTAAGGGCCTCGCAAGGTTTGTTCGATACGCTAGACAAA
AGGTTTTTGGATTAAGTGCCTTAAATGAATCAAGTTTATTTACATTACGG
ATACCTAATTGAAAAAAACTCAATGCAGCCTCACATTGACATCCTCTGCT
GCTCCCTCACAGCATAACTCAAAAAATACTTGCTGCACCCTCACAGCATA
ACTCAACAATTTTCTTGCTGCACCCTTACTGTGCAGTTCAATTTTTGATG
CACCCTTACATCAATAAAACACTAATAATAACTAGCCATAGCTTTCACTA
ACTGCCACCCGCTAATTAATACAAATGCTTGTAAAAACTAATTAATGCTA
ATTAAGGCTTTTTAATGCTTTATAGCAAAAGTCTGGAAATGATTTGGAAT
AGTTAGAATGATTCTTCTCAGCATTTTCTTTGAGATATCATGAATAAGCT
AACATAAATGAAACATATTTTTTTTCTAAAAAGTGAATTACTTTTTACAA
AGAATAAAATACGAATCTTAAAGCCATTGACCTTTTACATAGTTATAATG
TATGTTGATTCAGCAGATTGAAATAAATAGAATCTTTCGTAATGAATAAA
GAAAAATGTGGAGCAAAATTTTTTTCTTCCTTTTATTTACAAATTTGAAA
GGAATCTTTTATTAAAATTTTGCTGACATCAGTTTCAGACGAGTCGGGTG
TACATAACACCGTATAATCCCTTTAAACATTCATTAGGAAAAGTGTCCAG
GTAGAATCAATTACAGACAGTTACAGATACTAAACCTAAGACATGCAACT
ATATTTATTTCAACCAATTTGAAATATAAATGAAATATAGTAGCATAAGA
AATGCTATGAGCCAGAAACATAACGAGCAGGAACCAAAAATTGACAGGTA
ACAACGTACTTAGGAGTTTTTCCAACTGTTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGTGGTAATAGTAGCGCAGTAACAAGGTAATATTGCGTTGT
CAAGGTAAACGAATCCTCATTCATAAAAAGCTTAAAGGGAAAATAAGAAA
CGTGAAATTAGATGATATATGGTGAGTGTACTGAAATTTCCTCAAAACTA
GTTCACAAAAGTTTCTTTCAATCTTTGAGAATAATTTCCCAAATAGTGCC
TGGTAAGGCGGTCGTCGAAAAATTGTTATATTCGCATCACCTGCCCACAT
CATATTTTCTGCTGATTTTCCGGTGCGGAGATGCGGAAAACAATTCGGGA
AAACCAATTTGTTCTTTCCAAGTATAGCTTTTTTCTCAATTGCTCCGACG
GCCATCGAAAAATTGTTTTGCTCGCAANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGGGGGGGGGGCTAAAATCTGAGGGGTGGGCTA
AGGACCCCTCTGCATGCTATGAGTATAGTTACCATAGGCTGTCCAGGAAG
AAGTTTCATTATTGGTTATTATATTATAAGTAAATTAATACTGTATTACT
TATACTAACGGACTTTCAGCTCAAATAGGAAGAAGTTTTAAAACGTGTAT
ATTCTTAAAAATTTTGATGCATTAGGATGAAAAGACATTTTATATCGAAC
TAACATCGATAACAAATCAATTTTTTTATCTTTACCTTTAGGATAAATTG
GGTGAGTTAATGGCTGCGAATGGCTCTAGGATTTTTGCACTTCAAGACGA
AGTTATGGGATTTTTCACTGCGCACGGGATTCTTTCTCAATCGACAAAGA
TTGCCGAAGGACGACAACTTCGTGACTTTCTCACCTTATACGACGGTGGT
GAACTAAACCGCGAGACTGGTAAGTTACACTTCACTGTTTGATCTTATTA
GTGTATTTAGTTTCATTATCTTCTCTTTTAAATCTAAATAGTTCTATCTG
AAAATGCGGATATTATGATGTATATTCAAACTATCAAATCGAACTCAATG
GAACCTAAAATCAAAGATAATTGAATAACTTAAAATTAAAAAAAAACTCT
GATAATTATGGGTACTAGTCGAGAACTAAGAATCTTTTGATCAACGGATT
AACACTTACGCGAGTACTCCTGTGTTTGGATAAATATCCTGATAATATGA
TATAATCGTACAAAAAAGTCAATGGAGTACTGGCGTAAATCAAAAGGGTT
AACCCATAGTTCGATTTGGTTTGGTTTAGTCGAATTATTTTTGAATTAAC
TTAAACTTTAACTTAAGTTAATCAACTTCTCAATTAAACGGACCTGGATT
GATGTATTCAATACGTGTTGTAATATTAAAACAATTAGTGGACATTTGAA
GCTTATTGCTTATTGTATGCTTCGATTTGAAAACCATTTTTAAACACTTT
TTAGCTATCATTACTAATTATTTGTTGAAAATACGGAAACAGAAATAATG
CATAAACATTCAACCGCTTTATGGCACATTAATAATAGTCTGTATGATTT
TGTTGAATACAATACAGACTATTAAAATCGCCTATAGTTTTCGTTGGATA
TTCGATTGATTAACCCTTCGCGTCGTTGAATATAACATCACCTCGCCGTC
GGGTTAATAAATCTCCGTAACCGACTTTTACCTATTGAATATCTGCTTAT
CAACCGCCTATGATCGTTTTATTTTTCAGTCACAGGGAATTGCAATTATA
ACATGCAAACGTCGCAGTTCAACTTTTTTGGTTTAAATCAGCCAACTATG
TCTTACAGCATCATTAGAGATGAATATGGAATATCTGTTGGTTTTCAAAA
TAGGTATATTGTTTAGCTAATTAAATATTTTGCTTTAGATAGGGAAATAT
TTCTTAAAACGGGCTTTTTTGGGGGTATTTTTAAAAACTAATGCACAAAA
TGACCCAGGGCCAGGATCAAAAAATGTAAACTGGTATGTATGATAGCATC
ATATACAAATTGAAGGCATCAGACCACTTAGTGTGTCGAATTATTGCCTT
CAACATACACATCCTGTACAATAACATATATGCCTGTATAGAATAATCGA
CCTCA

Coding sequence (CDS) from alignment at scaffold_107:7165..20019-

>TCONS_00046227 ID=TCONS_00046227|Name=TCONS_00046227|organism=Clytia hemisphaerica|type=CDS|length=2052bp|location=Sequence derived from alignment at scaffold_107:7165..20019- (Clytia hemisphaerica)
TCACAGGGAATTGCAATTATAACATGCAAACGTCGCAGTTCAACTTTTTT
GGTTTAAATCAGCCAACTATGTCTTACAGCATCATTAGAGATGAATATGG
AATATCTGTTGGTTTTCAAAATAGGTATATTGTTTAGGATAAATTGGGTG
AGTTAATGGCTGCGAATGGCTCTAGGATTTTTGCACTTCAAGACGAAGTT
ATGGGATTTTTCACTGCGCACGGGATTCTTTCTCAATCGACAAAGATTGC
CGAAGGACGACAACTTCGTGACTTTCTCACCTTATACGACGGTGGTGAAC
TAAACCGCGAGACTGGTCGAGGAAAAACTCCTTTAAGGAAATTCCTTAAA
GGAATACTTGACGAGGTTATGAAGAAGGTGGATCTAAACCCCATGAGAAA
AGGAAGGACGGTGGTGTTGAAGAATTGTTCTTGGATGGGCCATTCAGTCG
TTAACGTTAAGAGGGGATGGAGAGAGGAGGTTGTGCTCTGGATAATGATA
AGTCAGGGAACAGTCACAGGGAATTGCAATTATAACATGCAAACGTCGCA
GTTCAACTTTTTTGGTTTAAATCAGCCAACTATGTCTTACAGCATCATTA
GAGATGAATATGGAATATCTGTTGGTTTTCAAAATAGGTATATTGTTTAG
GATAAATTGGGTGAGTTAATGGCTGCGAATGGCTCTAGGATTTTTGCACT
TCAAGACGAAGTTATGGGATTTTTCACTGCGCACGGGATTCTTTCTCAAT
CGACAAAGATTGCCGAAGGACGACAACTTCGTGACTTTCTCACCTTATAC
GACGGTGGTGAACTAAACCGCGAGACTGGTCGAGGAAAAACTCCTTTAAG
GAAATTCCTTAAAGGAATACTTGACGAGGTTATGAAGAAGGTGGATCTAA
ACCCCATGAGAAAAGGAAGGACGGTGGTGTTGAAGAATTGTTCTTGGATG
GGCCATTCAGTCGTTAACGTTAAGAGGGGATGGAGAGAGGAGGTTGTGCT
CTGGATAATGATAAGTCAGGGAACAGTCACAGGGAATTGCAATTATAACA
TGCAAACGTCGCAGTTCAACTTTTTTGGTTTAAATCAGCCAACTATGTCT
TACAGCATCATTAGAGATGAATATGGAATATCTGTTGGTTTTCAAAATAG
GTATATTGTTTAGGATAAATTGGGTGAGTTAATGGCTGCGAATGGCTCTA
GGATTTTTGCACTTCAAGACGAAGTTATGGGATTTTTCACTGCGCACGGG
ATTCTTTCTCAATCGACAAAGATTGCCGAAGGACGACAACTTCGTGACTT
TCTCACCTTATACGACGGTGGTGAACTAAACCGCGAGACTGGTCGAGGAA
AAACTCCTTTAAGGAAATTCCTTAAAGGAATACTTGACGAGGTTATGAAG
AAGGTGGATCTAAACCCCATGAGAAAAGGAAGGACGGTGGTGTTGAAGAA
TTGTTCTTGGATGGGCCATTCAGTCGTTAACGTTAAGAGGGGATGGAGAG
AGGAGGTTGTGCTCTGGATAATGATAAGTCAGGGAACAGTCACAGGGAAT
TGCAATTATAACATGCAAACGTCGCAGTTCAACTTTTTTGGTTTAAATCA
GCCAACTATGTCTTACAGCATCATTAGAGATGAATATGGAATATCTGTTG
GTTTTCAAAATAGGTATATTGTTTAGGATAAATTGGGTGAGTTAATGGCT
GCGAATGGCTCTAGGATTTTTGCACTTCAAGACGAAGTTATGGGATTTTT
CACTGCGCACGGGATTCTTTCTCAATCGACAAAGATTGCCGAAGGACGAC
AACTTCGTGACTTTCTCACCTTATACGACGGTGGTGAACTAAACCGCGAG
ACTGGTCGAGGAAAAACTCCTTTAAGGAAATTCCTTAAAGGAATACTTGA
CGAGGTTATGAAGAAGGTGGATCTAAACCCCATGAGAAAAGGAAGGACGG
TGGTGTTGAAGAATTGTTCTTGGATGGGCCATTCAGTCGTTAACGTTAAG
AGGGGATGGAGAGAGGAGGTTGTGCTCTGGATAATGATAAGTCAGGGAAC
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029525XLOC_029525Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046227-exon-scaffold_107-1575043694:19614..20019TCONS_00046227-exon-scaffold_107-1575043694:19614..20019Clytia hemisphaericaexon
TCONS_00046227-exon-scaffold_107-1575043694:14413..14572TCONS_00046227-exon-scaffold_107-1575043694:14413..14572Clytia hemisphaericaexon
TCONS_00046227-exon-scaffold_107-1575043694:13442..13560TCONS_00046227-exon-scaffold_107-1575043694:13442..13560Clytia hemisphaericaexon
TCONS_00046227-exon-scaffold_107-1575043694:8351..8528TCONS_00046227-exon-scaffold_107-1575043694:8351..8528Clytia hemisphaericaexon
TCONS_00046227-exon-scaffold_107-1575043694:7165..7540TCONS_00046227-exon-scaffold_107-1575043694:7165..7540Clytia hemisphaericaexon
TCONS_00046227-exon-scaffold_107-1510915933:19614..20019TCONS_00046227-exon-scaffold_107-1510915933:19614..20019Clytia hemisphaericaexon
TCONS_00046227-exon-scaffold_107-1510915933:14413..14572TCONS_00046227-exon-scaffold_107-1510915933:14413..14572Clytia hemisphaericaexon
TCONS_00046227-exon-scaffold_107-1510915933:13442..13560TCONS_00046227-exon-scaffold_107-1510915933:13442..13560Clytia hemisphaericaexon
TCONS_00046227-exon-scaffold_107-1510915933:8351..8528TCONS_00046227-exon-scaffold_107-1510915933:8351..8528Clytia hemisphaericaexon
TCONS_00046227-exon-scaffold_107-1510915933:7165..7540TCONS_00046227-exon-scaffold_107-1510915933:7165..7540Clytia hemisphaericaexon
TCONS_00046227-exon-scaffold_107-1491911889:19614..20019TCONS_00046227-exon-scaffold_107-1491911889:19614..20019Clytia hemisphaericaexon
TCONS_00046227-exon-scaffold_107-1491911889:14413..14572TCONS_00046227-exon-scaffold_107-1491911889:14413..14572Clytia hemisphaericaexon
TCONS_00046227-exon-scaffold_107-1491911889:13442..13560TCONS_00046227-exon-scaffold_107-1491911889:13442..13560Clytia hemisphaericaexon
TCONS_00046227-exon-scaffold_107-1491911889:8351..8528TCONS_00046227-exon-scaffold_107-1491911889:8351..8528Clytia hemisphaericaexon
TCONS_00046227-exon-scaffold_107-1491911889:7165..7540TCONS_00046227-exon-scaffold_107-1491911889:7165..7540Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046227-proteinTCONS_00046227-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_107supercontigscaffold_107:7165..20019 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.55496	1.05203	0.219145	0.853509	39.9549	31.9422	40.2725	44.3903	41.8111	48.9805	57.9626	36.9491	24.4254	26.085	10.9222	12.9412	12.3689	12.1921	14.5531	17.4642	16.9477	14.8606	6.99295	9.85131	33.4355	44.163	21.0717	20.5955	13.1517	11.7459
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025048DUF3987
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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