TCONS_00046231 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046231
Unique NameTCONS_00046231
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length562

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046231 ID=TCONS_00046231|Name=TCONS_00046231|organism=Clytia hemisphaerica|type=transcript|length=562bp
attgaaaataaataaattgtatCAGACTAGTTCCTAAAATGATGTTGTTC
TTTCTGGATTGTATTTCCTTTTCATTGTTAATCGCGATAATATGTTGATT
ATTGTTCCTTATTTGTGAATGGTTTGAGCTTGAGAGGCGTCATCCCTTTG
CTACGTAGTGGGACATCACCGATTTCAATACCACGAAACAGCTTCTTTGC
TCCTTCTCTAAATATCTTGCATTTGCTCAAAGTGTTTTGGTCTTATACTG
TGGTTTTTGATATCCCAATACCTTTTGTCATCTACCTATAACATAAATAA
GGAAATAAGCGCAACAACGAAAAAGTTCACCGAAATATTCAAGTCAAGTC
CTATGCTGAGATAACGAAGGAGAAAAAAGAAGAGTTCAAGACCATTataa
aggaaaaaaatgaagaagaaccGCGCGATGAAAAGGAAATACAATCCAGA
AAGAACAACATCATCATTCACGGGCTGGAAAAAGGAGTTACCATTGATAG
TCATGTCGAGGAAAAACATAAATGGGATGATTTGAAATAAGAAAGTTATT
GGCAACTTGTGG
Run BLAST on NCBI

transcript from alignment at scaffold_107:3320..3881

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046231 ID=TCONS_00046231|Name=TCONS_00046231|organism=Clytia hemisphaerica|type=transcript|length=562bp|location=Sequence derived from alignment at scaffold_107:3320..3881 (Clytia hemisphaerica)
CCACAAGTTGCCAATAACTTTCTTATTTCAAATCATCCCATTTATGTTTT
TCCTCGACATGACTATCAATGGTAACTCCTTTTTCCAGCCCGTGAATGAT
GATGTTGTTCTTTCTGGATTGTATTTCCTTTTCATCGCGCggttcttctt
catttttttcctttatAATGGTCTTGAACTCTTCTTTTTTCTCCTTCGTT
ATCTCAGCATAGGACTTGACTTGAATATTTCGGTGAACTTTTTCGTTGTT
GCGCTTATTTCCTTATTTATGTTATAGGTAGATGACAAAAGGTATTGGGA
TATCAAAAACCACAGTATAAGACCAAAACACTTTGAGCAAATGCAAGATA
TTTAGAGAAGGAGCAAAGAAGCTGTTTCGTGGTATTGAAATCGGTGATGT
CCCACTACGTAGCAAAGGGATGACGCCTCTCAAGCTCAAACCATTCACAA
ATAAGGAACAATAATCAACATATTATCGCGATTAACAATGAAAAGGAAAT
ACAATCCAGAAAGAACAACATCATTTTAGGAACTAGTCTGatacaattta
tttattttcaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029527XLOC_029527Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046231-exon-scaffold_107-1491911889:3320..3881TCONS_00046231-exon-scaffold_107-1491911889:3320..3881Clytia hemisphaericaexon
TCONS_00046231-exon-scaffold_107-1510915933:3320..3881TCONS_00046231-exon-scaffold_107-1510915933:3320..3881Clytia hemisphaericaexon
TCONS_00046231-exon-scaffold_107-1575043694:3320..3881TCONS_00046231-exon-scaffold_107-1575043694:3320..3881Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_107supercontigscaffold_107:3320..3881 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0980068	0.910362	0.333993	0.271069	0.85681	0.129213	0.362903	0.0846924	0.104905	0	0	0	0	0.0570692	0	0	0	0.213675	0.111798	0	0	0	0	0.431625	0.192607	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046231 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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