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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046234 ID=TCONS_00046234|Name=TCONS_00046234|organism=Clytia hemisphaerica|type=transcript|length=1126bp
tcccttctcggcttccgtaCATGTCAGATACAGGGTCAATTTAATAATCT
CcattagccaaattctggagccgctcgctgcgctgcaTGCAGTTGATGCG
CGTGTCGGGACAAAAATCGCGGcggaagccattttgtttacattctTTGC
TGGGGAACTGGGCTGGGGAAGCACTGCAAAACAGTGCTTTTTGAGTAGAT
TTGGTGATTCTtgggaagaaagaagaagaatactGCTTGGAACCAACATC
AAATGTGTTGGAATAGACTTCTATCATACTTTGGAATACATAAAAGACAA
CACTTTTTGAACATAATGAATGTGTGAAACTTGCAAACTTCACTCAAGTA
AGTTTTGTCGATTTTGCTGCTTTCGAAAGCTGTTGATGGAGACTACTAAC
TTGCAGAAGTAACTTTATATTGGTGCAAACAATGACTATGATAGCTTCAC
AAACATTCCCTATCATGGAATTCAGCTGGGAAAGATTTTTTCGATCGCAT
TGAACAGTTTTGATATGACTGTATGAGAGAGATGTCCAAGATATAGGCTC
ATAGTTCAAACATCTTTTCACCCATCTCTTAAGATAACAAAAATAAcatg
attcattttattcatctcaaaaataggggacaagctggagtttttacaag
ctcttatgtgatttggttggtcgttaagatgtaataaaaagAATCCCgtt
ctttttctaaagaacgcgtcatctctatcacttcaaataaccaattagtg
aagtatcttataaaaactccagctcatcccaaaaaTGGCTGAGACACCAT
CGGTCATATCGGATTCATCACTGACTGCGCTGAAGTATAAActtaactct
caaaattttgtcgTTGAATCTTCCCACAGTCGTCAAAGACAAGTTATAAT
GTTATAAAAGTGACTGATTTTGGGGTACGTTTTACGTGCAGGTTTTGATT
GGATCCAGGAAAAGAAAAGGATAAGCAAATCCGAAGAAAGtgcccaaaaa
ttctgaaattttggaagtaccgcaaaaaattgaaagcaTGTTACGACATT
GACATGACTGTGTATATCATATAatggattgttattgttttggataTCCG
GCATACCGTCAACAGCTCTAACTTNN Run BLAST on NCBI transcript from alignment at scaffold_107:26008..27133 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046234 ID=TCONS_00046234|Name=TCONS_00046234|organism=Clytia hemisphaerica|type=transcript|length=1126bp|location=Sequence derived from alignment at scaffold_107:26008..27133 (Clytia hemisphaerica)
NNAAGTTAGAGCTGTTGACGGTATGCCGGAtatccaaaacaataacaatc
catTATATGATATACACAGTCATGTCAATGTCGTAACAtgctttcaattt
tttgcggtacttccaaaatttcagaatttttgggcaCTTTCTTCGGATTT
GCTTATCCTTTTCTTTTCCTGGATCCAATCAAAACCTGCACGTAAAACGT
ACCCCAAAATCAGTCACTTTTATAACATTATAACTTGTCTTTGACGACTG
TGGGAAGATTCAAcgacaaaattttgagagttaagTTTATACTTCAGCGC
AGTCAGTGATGAATCCGATATGACCGATGGTGTCTCAGCCAtttttggga
tgagctggagtttttataagatacttcactaattggttatttgaagtgat
agagatgacgcgttctttagaaaaagaacGGGATTctttttattacatct
taacgaccaaccaaatcacataagagcttgtaaaaactccagcttgtccc
ctatttttgagatgaataaaatgaatcatgTTATTTTTGTTATCTTAAGA
GATGGGTGAAAAGATGTTTGAACTATGAGCCTATATCTTGGACATCTCTC
TCATACAGTCATATCAAAACTGTTCAATGCGATCGAAAAAATCTTTCCCA
GCTGAATTCCATGATAGGGAATGTTTGTGAAGCTATCATAGTCATTGTTT
GCACCAATATAAAGTTACTTCTGCAAGTTAGTAGTCTCCATCAACAGCTT
TCGAAAGCAGCAAAATCGACAAAACTTACTTGAGTGAAGTTTGCAAGTTT
CACACATTCATTATGTTCAAAAAGTGTTGTCTTTTATGTATTCCAAAGTA
TGATAGAAGTCTATTCCAACACATTTGATGTTGGTTCCAAGCagtattct
tcttctttcttcccaAGAATCACCAAATCTACTCAAAAAGCACTGTTTTG
CAGTGCTTCCCCAGCCCAGTTCCCCAGCAAagaatgtaaacaaaatggct
tccgCCGCGATTTTTGTCCCGACACGCGCATCAACTGCAtgcagcgcagc
gagcggctccagaatttggctaatgGAGATTATTAAATTGACCCTGTATC
TGACATGtacggaagccgagaaggga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046234-exon-scaffold_107-1491911889:26008..27133 | TCONS_00046234-exon-scaffold_107-1491911889:26008..27133 | Clytia hemisphaerica | exon |
| TCONS_00046234-exon-scaffold_107-1510915933:26008..27133 | TCONS_00046234-exon-scaffold_107-1510915933:26008..27133 | Clytia hemisphaerica | exon |
| TCONS_00046234-exon-scaffold_107-1575043694:26008..27133 | TCONS_00046234-exon-scaffold_107-1575043694:26008..27133 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_107 | supercontig | scaffold_107:26008..27133 . |
Blast
The following BLAST results are available for this feature:
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