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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046235 ID=TCONS_00046235|Name=TCONS_00046235|organism=Clytia hemisphaerica|type=transcript|length=1531bp
TCGAACGTGCGTACCACACTAGGCCCATCTTCATTTGTTCCAGTTTAttg
aaggcccaattgtaattTCATTATTCATCCTATATCATTTAGGTTAGCAA
AGGTATTCTCCCAAAGAACAAGTGTATCAAATTTCATctaaatctgacca
tatttgaGGTCTCTAGGCTCCTACCACATTTTAACTCGTAACTCGGCAAA
TAAAACTCGTCCCACGGCGCCCCCCTCCCCccataaaaaagaagaaaaaa
atgaaagtagTACCCGAGATATTCACTCTACGAACAAGTGAAGGATTTCA
GCAAAGTCTgactatttttgaggaaaacaAGCTGGCCTAAAGTTTAATCA
TCGTTTTGGCAAAATAAATCATCCCCAAGTCCAAAAAGTCAACAttttca
agaaatgaaaaaaatagtcCCCAGATATTTACTTAAGCAAAAGGTGTacc
aaatttgagaaaaaaaggatgATTTTTGGGAACAATGCCGATCGAGATAT
gccaatatttcattttttcaggggAGTTAAGATTTCCTGCAGGGAGTCAT
TATTTTCCAGTAAATAATGACTGGGGAGTATAAATTTTGGGGAGTATTTT
TTTACGGTGACACcggtaatgaattttgaaatttcaggggTGAATAAAGA
ATACCAAATATCAATTGTTACATATTTCTTACTTTTTGACTTCCTTTGAT
GTTGCTTTAGTATTTAACGACCCAAACAATCTGTTAAATATTTGTGACTT
GCATCGAAAAGGCAGGTTGGCATACAACAATTCAACTTCGTATCGTTGCA
GAAGAGCAGTAGAAACCACAGTATCCTCTGTACTAACAAACCATTTTTCA
TCCTCTGAATCAATATCCAAGTATCTGAATTTTCCTTTGGAATAAAATGT
TCCATATTCCGTCACATGGCATTTTGGGCAACTTAACTTGAATCTCCAGC
CATTTCTTATGCCATGCTCTTCGTCAAAAAACGTAGTCGCAGTTTTTGTT
GATGTTACTAGATCTATGTCACAAAAGCGACATTTACTTTTCTTTGGAGT
GTAGAACAATGCAATTTCTTCTTGTTTAGTTTGGTCTTCGTCTTCACATT
CGTCTATGAGATTTTTAGCCTCCGCTTTAAATTCTCTCAATTCGGAATTA
TTTGGCGATTTGCCAAAAAGCCGTTCAAGGCAATAAACTGCCACCTCGTT
ATTAACATGTACAGCATTCCCTATTTCCAGATACAActtccaaaattcaa
atttcgttTTTTCGCTATTTAGGATTGTCATTTTCTATGtcttaaagaaa
aaagttaagaaaattcaaCAATTTAATCACATACCAAAACTTTTATCTGT
TTTAGTGGAAATTTATCTGTTACGGGAATTTTACACCAAAAACTTGTTAT
TTTGCTAAGAAAACAAAAGGAACGGTAACGGAACATTACTGTATACTGTG
TATACAAAACACCTCGACTATTTAATTCATGCTGAATGGATCTACCTAAC
AGTGAAATGCTTTCCCGCTAATTTTGAGGGG Run BLAST on NCBI protein sequence of TCONS_00046235-protein >TCONS_00046235-protein ID=TCONS_00046235-protein|Name=TCONS_00046235-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MTILNSEKTKFEFWKLYLEIGNAVHVNNEVAVYCLERLFGKSPNNSELRE
FKAEAKNLIDECEDEDQTKQEEIALFYTPKKSKCRFCDIDLVTSTKTATT
FFDEEHGIRNGWRFKLSCPKCHVTEYGTFYSKGKFRYLDIDSEDEKWFVS
TEDTVVSTALLQRYEVELLYANLPFRCKSQIFNRLFGSLNTKATSKEVKK Run BLAST on NCBI transcript from alignment at scaffold_107:30622..32152 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046235 ID=TCONS_00046235|Name=TCONS_00046235|organism=Clytia hemisphaerica|type=transcript|length=1531bp|location=Sequence derived from alignment at scaffold_107:30622..32152 (Clytia hemisphaerica)
CCCCTCAAAATTAGCGGGAAAGCATTTCACTGTTAGGTAGATCCATTCAG
CATGAATTAAATAGTCGAGGTGTTTTGTATACACAGTATACAGTAATGTT
CCGTTACCGTTCCTTTTGTTTTCTTAGCAAAATAACAAGTTTTTGGTGTA
AAATTCCCGTAACAGATAAATTTCCACTAAAACAGATAAAAGTTTTGGTA
TGTGATTAAATTGttgaattttcttaacttttttctttaagaCATAGAAA
ATGACAATCCTAAATAGCGAAAAaacgaaatttgaattttggaagTTGTA
TCTGGAAATAGGGAATGCTGTACATGTTAATAACGAGGTGGCAGTTTATT
GCCTTGAACGGCTTTTTGGCAAATCGCCAAATAATTCCGAATTGAGAGAA
TTTAAAGCGGAGGCTAAAAATCTCATAGACGAATGTGAAGACGAAGACCA
AACTAAACAAGAAGAAATTGCATTGTTCTACACTCCAAAGAAAAGTAAAT
GTCGCTTTTGTGACATAGATCTAGTAACATCAACAAAAACTGCGACTACG
TTTTTTGACGAAGAGCATGGCATAAGAAATGGCTGGAGATTCAAGTTAAG
TTGCCCAAAATGCCATGTGACGGAATATGGAACATTTTATTCCAAAGGAA
AATTCAGATACTTGGATATTGATTCAGAGGATGAAAAATGGTTTGTTAGT
ACAGAGGATACTGTGGTTTCTACTGCTCTTCTGCAACGATACGAAGTTGA
ATTGTTGTATGCCAACCTGCCTTTTCGATGCAAGTCACAAATATTTAACA
GATTGTTTGGGTCGTTAAATACTAAAGCAACATCAAAGGAAGTCAAAAAG
TAAGAAATATGTAACAATTGATATTTGGTATTCTTTATTCAcccctgaaa
tttcaaaattcattaccgGTGTCACCGTAAAAAAATACTCCCCAAAATTT
ATACTCCCCAGTCATTATTTACTGGAAAATAATGACTCCCTGCAGGAAAT
CTTAACTcccctgaaaaaatgaaatattggcATATCTCGATCGGCATTGT
TCCCAAAAATcatcctttttttctcaaatttggtACACCTTTTGCTTAAG
TAAATATCTGGGgactatttttttcatttcttgaaaaTGTTGACTTTTTG
GACTTGGGGATGATTTATTTTGCCAAAACGATGATTAAACTTTAGGCCAG
CTtgttttcctcaaaaatagtcAGACTTTGCTGAAATCCTTCACTTGTTC
GTAGAGTGAATATCTCGGGTActactttcatttttttcttcttttttatg
gGGGGAGGGGGGCGCCGTGGGACGAGTTTTATTTGCCGAGTTACGAGTTA
AAATGTGGTAGGAGCCTAGAGACCtcaaatatggtcagatttagATGAAA
TTTGATACACTTGTTCTTTGGGAGAATACCTTTGCTAACCTAAATGATAT
AGGATGAATAATGAaattacaattgggccttcaaTAAACTGGAACAAATG
AAGATGGGCCTAGTGTGGTACGCACGTTCGA Coding sequence (CDS) from alignment at scaffold_107:30622..32152 >TCONS_00046235 ID=TCONS_00046235|Name=TCONS_00046235|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at scaffold_107:30622..32152 (Clytia hemisphaerica)
ATGACAATCCTAAATAGCGAAAAaacgaaatttgaattttggaagTTGTA
TCTGGAAATAGGGAATGCTGTACATGTTAATAACGAGGTGGCAGTTTATT
GCCTTGAACGGCTTTTTGGCAAATCGCCAAATAATTCCGAATTGAGAGAA
TTTAAAGCGGAGGCTAAAAATCTCATAGACGAATGTGAAGACGAAGACCA
AACTAAACAAGAAGAAATTGCATTGTTCTACACTCCAAAGAAAAGTAAAT
GTCGCTTTTGTGACATAGATCTAGTAACATCAACAAAAACTGCGACTACG
TTTTTTGACGAAGAGCATGGCATAAGAAATGGCTGGAGATTCAAGTTAAG
TTGCCCAAAATGCCATGTGACGGAATATGGAACATTTTATTCCAAAGGAA
AATTCAGATACTTGGATATTGATTCAGAGGATGAAAAATGGTTTGTTAGT
ACAGAGGATACTGTGGTTTCTACTGCTCTTCTGCAACGATACGAAGTTGA
ATTGTTGTATGCCAACCTGCCTTTTCGATGCAAGTCACAAATATTTAACA
GATTGTTTGGGTCGTTAAATACTAAAGCAACATCAAAGGAAGTCAAAAAG
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046235-exon-scaffold_107-1491911889:30622..32152 | TCONS_00046235-exon-scaffold_107-1491911889:30622..32152 | Clytia hemisphaerica | exon |
| TCONS_00046235-exon-scaffold_107-1510915933:30622..32152 | TCONS_00046235-exon-scaffold_107-1510915933:30622..32152 | Clytia hemisphaerica | exon |
| TCONS_00046235-exon-scaffold_107-1575043694:30622..32152 | TCONS_00046235-exon-scaffold_107-1575043694:30622..32152 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_107 | supercontig | scaffold_107:30622..32152 . |
Blast
The following BLAST results are available for this feature:
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