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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046236 ID=TCONS_00046236|Name=TCONS_00046236|organism=Clytia hemisphaerica|type=transcript|length=1604bp
TTTTTGGTCAACATTTCACAGCTCCGACACTGGCGAGATATTCAACTTGA
CATGTGTGGTATGAGAAGAACAAGAACCAGAACTTTGTATTATGATTCTA
TTCGTGAGAACTTCGGTGATAGTGAGGATGACTCTGATATTTTTATTAAT
AGATATACATATATCAGTAAAATACATCCGGATTTTCACAAAGTTATCAT
CACGATCAACTTTAAAGGAAAAGATCGACCTGAGGATCTGGGTTATGTTC
AATATTATTTTGACAAAGGAGAGCACGAAATTGACTTTGgtaagaaaaaa
tcaaacacCATCACATTTTCGATGCGCGAGGAAATTCGAGAACTTTCATC
AAATGGTCATTCAGggaaatctattttgaagaaaatctccaaaaagtCTT
CTTTCGATGATGCTAGAATTTTGCCTGAGATTCCTCCATCTCTTGCGAAA
ATATACGATATTTCTCGATCATCGAAGTCCTCAAAAGCTGATGATATTAT
TGAATTGATTGGTCGTTGCAATACAGAAATGGACAGAGAAGATGCCTTCT
TAAGAGATGTGAGAAGTGCACCTGAGTTCAGCGCAGTTCTTGGAAATAAC
CGACAGCTGAAGGACATTTTAAAATTCTGTGCAGATTCGAACTCGTCTGT
TTTGGGTGTTGATCCAACATTCGACTTGTTACCGTTCAACACTACTGTCA
GCACATATAGACACCCAATGCTAATTGTAAAGAAAAGCAAGGTTCATCCA
ACTATCCTTGGACCGATTTTGATTCATTCAGCTAAAACATTCTCTTCATA
CTTTACATTACCTAGCACCATGGTGAGACTTTGTCCTGGGCTTGCAAATA
TTAAAGCCTTCGGAACAGACGAGGAAATTAATGTATATCGTGCTCTTCAA
ACATGTTTTAAAGATGCCGATCACTTACTTTGCTCTATTCACGTGAAAGA
TAACGTATTCAAGAAGCTTTCAGAACTAAATGTTGAGCAACCTGATCGAT
TCATTGAAGAGATCTTTGGTCACCAAGTTGGGGACGTTAAGATAAAAGGG
TTGGTAGATTCGGAGAATGATATCGAATTCGAGGAAAAGTTCCTTTATCT
AACTGAACAGTGGAGTAAACGAAGAAACGGAAAAGACTTTACGAAATACA
TAATCTCCTATAAGAAAGatgaaattaaaacaaaaatgtgTTTATCGACT
CGCCGTAGATGTGGTCTTGGATTTGATAGTTATGACCAAAATTGCAACGA
ATCAACTAATTCAAtgttgaaaaattcgaaaataaaagGACTGCTCACAA
TCAATCAGACCATACAACTTGTCAAGGACGAGGTTGAATTACAAGAAGAA
AGGATGAAGGATGCTTTAGTGGGAAAAGGAGATTGGACTTTGGCCCCTGA
ATACGCACATCTTGCAATATCGGACGTCAAATATTCGCGTATGAAAAATG
TAGAAAAGAAAAGAATGTTAGAAAATCTTACCAAAAAGTTTACCCCGGTG
ACGAACGAAGCTGGTTCGGAGGTTGGCGTAAAAGTTACCGTGCCGTCTTT
TACAATCGTCAGCTTGCCACTATCTGTCTCTTCAAAAATGACACAAGAAG
CGAC Run BLAST on NCBI protein sequence of TCONS_00046236-protein >TCONS_00046236-protein ID=TCONS_00046236-protein|Name=TCONS_00046236-protein|organism=Clytia hemisphaerica|type=polypeptide|length=534bp
FLVNISQLRHWRDIQLDMCGMRRTRTRTLYYDSIRENFGDSEDDSDIFIN
RYTYISKIHPDFHKVIITINFKGKDRPEDLGYVQYYFDKGEHEIDFGKKK
SNTITFSMREEIRELSSNGHSGKSILKKISKKSSFDDARILPEIPPSLAK
IYDISRSSKSSKADDIIELIGRCNTEMDREDAFLRDVRSAPEFSAVLGNN
RQLKDILKFCADSNSSVLGVDPTFDLLPFNTTVSTYRHPMLIVKKSKVHP
TILGPILIHSAKTFSSYFTLPSTMVRLCPGLANIKAFGTDEEINVYRALQ
TCFKDADHLLCSIHVKDNVFKKLSELNVEQPDRFIEEIFGHQVGDVKIKG
LVDSENDIEFEEKFLYLTEQWSKRRNGKDFTKYIISYKKDEIKTKMCLST
RRRCGLGFDSYDQNCNESTNSMLKNSKIKGLLTINQTIQLVKDEVELQEE
RMKDALVGKGDWTLAPEYAHLAISDVKYSRMKNVEKKRMLENLTKKFTPV
TNEAGSEVGVKVTVPSFTIVSLPLSVSSKMTQEA Run BLAST on NCBI transcript from alignment at scaffold_108:30195..33118+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046236 ID=TCONS_00046236|Name=TCONS_00046236|organism=Clytia hemisphaerica|type=transcript|length=2924bp|location=Sequence derived from alignment at scaffold_108:30195..33118+ (Clytia hemisphaerica)
TTTTTGGTCAACATTTCACAGCTCCGACACTGGCGAGATATTCAACTTGA
CATGTGTGGTATGAGAAGAACAAGAACCAGAACTTTGTATTATGATTCTA
TTCGTGAGAACTTCGGTGATAGTGAGGATGACTCTGATATTTTTATTAAT
AGATATACATATATCAGTAAAATACATCCGGATTTTCACAAAGTTATCAT
CACGATCAACTTTAAAGGAAAAGATCGACCTGAGGATCTGGGTTATGTTC
AATATTATTTTGACAAAGGAGAGCACGAAATTGACTTTGgtaagaaaaaa
tcaaacacCATCACATTTTCGATGCGCGAGGAAATTCGAGAACTTTCATC
AAATGGTCATTCAGggaaatctattttgaagaaaatctccaaaaagtCTT
CTTTCGATGATGCTAGAATTTTGCCTGAGATTCCTCCATCTCTTGCGAAA
ATATACGATATTTCTCGATCATCGAAGTCCTCAAAAGCTGATGATATTAT
TGAATTGATTGGTCGTTGCAATACAGAAATGGACAGAGAAGATGCCTTCT
TAAGAGATGTGAGAAGTGCACCTGAGTTCAGCGCAGTTCTTGGAAATAAC
CGACAGCTGAAGGACATTTTAAAATTCTGTGCAGATTCGAACTCGTCTGT
TTTGGGTGTTGATCCAACATTCGACTTGTTACCGTTCAACACTACTGTCA
GCACATATAGACACCCAATGCTAATTGTAAAGAAAAGCAAGGTTCATCCA
ACTATCCTTGGACCGATTTTGATTCATTCAGCTAAAACATTCTCTTCATA
CTTTACATTACCTAGCACCATGGTGAGACTTTGTCCTGGGCTTGCAAATA
TTAAAGCCTTCGGAACAGACGAGGAAATTAATGTATATCGTGCTCTTCAA
ACATGTTTTAAAGATGCCGATCACTTACTTTGCTCTATTCACGTGAAAGA
TAACGTATTCAAGAAGCTTTCAGAACTAAATGTTGAGCAACCTGATCGAT
TCATTGAAGAGATCTTTGGTCACCAAGTTGGGGACGTTAAGATAAAAGGG
TTGGTAGATTCGGAGAATGATATCGAATTCGAGGAAAAGTTCCTTTATCT
AACTGAACAGTGGAGTAAACGAAGAAACGGAAAAGACTTTACGAAATACA
TAATCTCCTATAAGAAAGatgaaattaaaacaaaaatgtgTTTATCGACT
CGCCGTAGATGTGGTCTTGGATTTGATAGTTATGACCAAAATTGCAACGA
ATCAACTAATTCAAtgttgaaaaattcgaaaataaaagGACTGCTCACAA
TCAATCAGACCATACAACTTGTCAAGGACGAGGTTGAATTACAAGAAGAA
AGGATGAAGGATGCTTTAGTGGGAAAAGGAGATTGGACTTTGGCCCCTGA
ATACGCACATCTTGCAATATCGGACGTCAAATATTCGCGTATGAAAAATG
TAGAAAAGAAAAGGTACGTGTCGAAATTCATAGTAGCACATACACAGTTT
CTGGAATCCACCTCAGAGATAGACAATCCTATCGTCTACAAAAGATCACT
CAATATAAAGGGCATAGTTTAGgaggcgggataaatttgaaagcGGAGGT
AGGCCAGAGAGGAGTAggcagtggcggaggtgttttCTTTTCCCGTAAAC
CACCGTGGTGGCTGTATATGTATGTGCATATATATTTTTCCTGTGTTCAC
TATTCCTCTAACGGTTGATGGCATCGTTTACCTCGGAGGTTCTAAATTAA
CTCATGTCCATCTCTCCGTACAAAATTGCAATACCCAAaatgtaacggag
cccgattttcgaaaaaaagtttttgggcAAATACGCTCTTCTCAAAATGC
AACCTCGTTCTCAATTATTGTTACCAAGATACTGGGGACGGCAACGTAGT
CAGACATAATTAATGTTTGCAAGCGTTTGCGGTTTTGTATCGAAATTGAA
AATGGTCTTTTGGTAAACATAGTAAATAATGTGTAAATCTAGTTCAAAGT
aataatttcatttgaaaacgaggcctgcCTGTAATGCTGTCGATTTATCT
CAAGAAGTGTGTATTcgggggaaaaaaatttttggactttgtgtgaaatt
gcttcattaattCTTTTCTCGATTTTTTCATAAAGATAGAGGACAAGTTT
CTCTAAGAAGTGGCTAAAGCTGTTTTACAGATTtctttttggccgtaaaa
atcagactttcgtatttggggaagcTACATTTAGGGAAGATAAGCATTTC
TCGTGATTAGCTTGGTACCttgtatgatttttttgcacaatactGTAAAA
TGGTAATGTTTGCAATCTGATAagcagattttcaaaaaaaataatttttt
ggatgaatcccctaaaaaagggtttttttcgGACTTGTGTGAAATTcctt
cattttgtttttctgatttttttgcatacaGACAGAGAGTGACTCAAAcc
gtttttcctggaaaatttcttttggccgtaaaaatcagATTATTGTATTT
GGGGAAACTCCCTTCTGTCATTTTTAATGAAGAATTCTGAAATATGACGA
ATAATAATTCTACAAAGACTGCAATCTAATTTTGCATTTTCAGCACCCTG
ACAGCTAGACATTAAGTGATTTATTGTTTGATGATTTAACTGAAAAAAAG
TAGAATATAGAAACTTACTTTACACTCGTCTGGCCTAAAAAGGACTGGTA
GGTCCAGATATGATGTTTGTATGGAAATATGGAAGATGCTTATTGTAGAA
AAAATTCCAcatatttcttctttttaactttAGAATGTTAGAAAATCTTA
CCAAAAAGTTTACCCCGGTGACGAACGAAGCTGGTTCGGAGGTTGGCGTA
AAAGTTACCGTGCCGTCTTTTACAATCGTCAGCTTGCCACTATCTGTCTC
TTCAAAAATGACACAAGAAGCGAC Coding sequence (CDS) from alignment at scaffold_108:30195..33118+ >TCONS_00046236 ID=TCONS_00046236|Name=TCONS_00046236|organism=Clytia hemisphaerica|type=CDS|length=3204bp|location=Sequence derived from alignment at scaffold_108:30195..33118+ (Clytia hemisphaerica)
TTTTTGGTCAACATTTCACAGCTCCGACACTGGCGAGATATTCAACTTGA
CATGTGTGGTATGAGAAGAACAAGAACCAGAACTTTGTATTATGATTCTA
TTCGTGAGAACTTCGGTGATAGTGAGGATGACTCTGATATTTTTATTAAT
AGATATACATATATCAGTAAAATACATCCGGATTTTCACAAAGTTATCAT
CACGATCAACTTTAAAGGAAAAGATCGACCTGAGGATCTGGGTTATGTTC
AATATTATTTTGACAAAGGAGAGCACGAAATTGACTTTGgtaagaaaaaa
tcaaacacCATCACATTTTCGATGCGCGAGGAAATTCGAGAACTTTCATC
AAATGGTCATTCAGggaaatctattttgaagaaaatctccaaaaagtCTT
CTTTCGATGATGCTAGAATTTTGCCTGAGATTCCTCCATCTCTTGCGAAA
ATATACGATATTTCTCGATCATCGAAGTCCTCAAAAGCTGATGATATTAT
TGAATTGATTGGTCGTTGCAATACAGAAATGGACAGAGAAGATGCCTTCT
TAAGAGATGTGAGAAGTGCACCTGAGTTCAGCGCAGTTCTTGGAAATAAC
CGACAGCTGAAGGACATTTTAAAATTCTGTGCAGATTCGAACTCGTCTGT
TTTGGGTGTTGATCCAACATTCGACTTGTTACCGTTCAACACTACTGTCA
GCACATATAGACACCCAATGCTAATTGTAAAGAAAAGCAAGGTTCATCCA
ACTATCCTTGGACCGATTTTGATTCATTCAGCTAAAACATTCTCTTCATA
CTTTACATTACCTAGCACCATGGTGAGACTTTGTCCTGGGCTTGCAAATA
TTAAAGCCTTCGGAACAGACGAGGAAATTAATGTATATCGTGCTCTTCAA
ACATGTTTTAAAGATGCCGATCACTTACTTTGCTCTATTCACGTGAAAGA
TAACGTATTCAAGAAGCTTTCAGAACTAAATGTTGAGCAACCTGATCGAT
TCATTGAAGAGATCTTTGGTCACCAAGTTGGGGACGTTAAGATAAAAGGG
TTGGTAGATTCGGAGAATGATATCGAATTCGAGGAAAAGTTCCTTTATCT
AACTGAACAGTGGAGTAAACGAAGAAACGGAAAAGACTTTACGAAATACA
TAATCTCCTATAAGAAAGatgaaattaaaacaaaaatgtgTTTATCGACT
CGCCGTAGATGTGGTCTTGGATTTGATAGTTATGACCAAAATTGCAACGA
ATCAACTAATTCAAtgttgaaaaattcgaaaataaaagGACTGCTCACAA
TCAATCAGACCATACAACTTGTCAAGGACGAGGTTGAATTACAAGAAGAA
AGGATGAAGGATGCTTTAGTGGGAAAAGGAGATTGGACTTTGGCCCCTGA
ATACGCACATCTTGCAATATCGGACGTCAAATATTCGCGTATGAAAAATG
TAGAAAAGAAAAGAATGTTAGAAAATCTTACCAAAAAGTTTACCCCGGTG
ACGAACGAAGCTGGTTCGGAGGTTGGCGTAAAAGTTACCGTGCCGTCTTT
TACAATCGTCAGCTTGCCACTATCTGTCTCTTCAAAAATGACACAAGAAG
CGTTTTTGGTCAACATTTCACAGCTCCGACACTGGCGAGATATTCAACTT
GACATGTGTGGTATGAGAAGAACAAGAACCAGAACTTTGTATTATGATTC
TATTCGTGAGAACTTCGGTGATAGTGAGGATGACTCTGATATTTTTATTA
ATAGATATACATATATCAGTAAAATACATCCGGATTTTCACAAAGTTATC
ATCACGATCAACTTTAAAGGAAAAGATCGACCTGAGGATCTGGGTTATGT
TCAATATTATTTTGACAAAGGAGAGCACGAAATTGACTTTGgtaagaaaa
aatcaaacacCATCACATTTTCGATGCGCGAGGAAATTCGAGAACTTTCA
TCAAATGGTCATTCAGggaaatctattttgaagaaaatctccaaaaagtC
TTCTTTCGATGATGCTAGAATTTTGCCTGAGATTCCTCCATCTCTTGCGA
AAATATACGATATTTCTCGATCATCGAAGTCCTCAAAAGCTGATGATATT
ATTGAATTGATTGGTCGTTGCAATACAGAAATGGACAGAGAAGATGCCTT
CTTAAGAGATGTGAGAAGTGCACCTGAGTTCAGCGCAGTTCTTGGAAATA
ACCGACAGCTGAAGGACATTTTAAAATTCTGTGCAGATTCGAACTCGTCT
GTTTTGGGTGTTGATCCAACATTCGACTTGTTACCGTTCAACACTACTGT
CAGCACATATAGACACCCAATGCTAATTGTAAAGAAAAGCAAGGTTCATC
CAACTATCCTTGGACCGATTTTGATTCATTCAGCTAAAACATTCTCTTCA
TACTTTACATTACCTAGCACCATGGTGAGACTTTGTCCTGGGCTTGCAAA
TATTAAAGCCTTCGGAACAGACGAGGAAATTAATGTATATCGTGCTCTTC
AAACATGTTTTAAAGATGCCGATCACTTACTTTGCTCTATTCACGTGAAA
GATAACGTATTCAAGAAGCTTTCAGAACTAAATGTTGAGCAACCTGATCG
ATTCATTGAAGAGATCTTTGGTCACCAAGTTGGGGACGTTAAGATAAAAG
GGTTGGTAGATTCGGAGAATGATATCGAATTCGAGGAAAAGTTCCTTTAT
CTAACTGAACAGTGGAGTAAACGAAGAAACGGAAAAGACTTTACGAAATA
CATAATCTCCTATAAGAAAGatgaaattaaaacaaaaatgtgTTTATCGA
CTCGCCGTAGATGTGGTCTTGGATTTGATAGTTATGACCAAAATTGCAAC
GAATCAACTAATTCAAtgttgaaaaattcgaaaataaaagGACTGCTCAC
AATCAATCAGACCATACAACTTGTCAAGGACGAGGTTGAATTACAAGAAG
AAAGGATGAAGGATGCTTTAGTGGGAAAAGGAGATTGGACTTTGGCCCCT
GAATACGCACATCTTGCAATATCGGACGTCAAATATTCGCGTATGAAAAA
TGTAGAAAAGAAAAGAATGTTAGAAAATCTTACCAAAAAGTTTACCCCGG
TGACGAACGAAGCTGGTTCGGAGGTTGGCGTAAAAGTTACCGTGCCGTCT
TTTACAATCGTCAGCTTGCCACTATCTGTCTCTTCAAAAATGACACAAGA
AGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00046236-exon-scaffold_108-1491911889:30195..31657 | TCONS_00046236-exon-scaffold_108-1491911889:30195..31657 | Clytia hemisphaerica | exon |
| TCONS_00046236-exon-scaffold_108-1510915933:30195..31657 | TCONS_00046236-exon-scaffold_108-1510915933:30195..31657 | Clytia hemisphaerica | exon |
| TCONS_00046236-exon-scaffold_108-1575043694:30195..31657 | TCONS_00046236-exon-scaffold_108-1575043694:30195..31657 | Clytia hemisphaerica | exon |
| TCONS_00046236-exon-scaffold_108-1491911889:32978..33118 | TCONS_00046236-exon-scaffold_108-1491911889:32978..33118 | Clytia hemisphaerica | exon |
| TCONS_00046236-exon-scaffold_108-1510915933:32978..33118 | TCONS_00046236-exon-scaffold_108-1510915933:32978..33118 | Clytia hemisphaerica | exon |
| TCONS_00046236-exon-scaffold_108-1575043694:32978..33118 | TCONS_00046236-exon-scaffold_108-1575043694:32978..33118 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_108 | supercontig | scaffold_108:30195..33118 + |
Blast
The following BLAST results are available for this feature:
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