TCONS_00046237 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046237
Unique NameTCONS_00046237
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1719

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046237 ID=TCONS_00046237|Name=TCONS_00046237|organism=Clytia hemisphaerica|type=transcript|length=1719bp
CTGAAAATTAAAGTCCATGTCCCAAAACAACTTATCAATTGTAAACAGCC
CTCGATAGCAACCAAGGAACTTCAGCAGTTCAGCAGACTTCACCAGTTGT
CTGCCTTTCTCACAAAATGTTGACCAGATTATGAATCGTATATGGTTAGG
AGAagaaatataaaacaaaaagatGGGGGCTGGTGCTTCAAATATGTTTT
CACAAAATCCAATGAAGAAGAATTATCCTATTGAGGATGTTCCAACCTTC
AAAATTGTCTTGGTTGGTGATTCTAATGCTGGGAAGACTTCAATCTTTCT
TCGATACACCAGAGAACAGTTTGATTATAGTTACCAACCCACCATGAATG
TTAACATTGGTAATGTGACTAAAAAAGTGCAATTTCCATTCGAAACTTTG
GTCTCTGTTTCACTATGGGATTTACCAGGGAGAGAAGAAATTGATTTGCG
GAGAAGCTATTATAAAGATATTGATGCAGCTATTGTTGTGGTTGATTTGA
GTGATGATGGTAGTTTAGAGATGGCAGGGACCTGGAAACAAGACATTAAT
AACAACAGTACATTGACCACAGCTGATAACAATGGAAACGAGAAAGCACG
AAGGAAAAGTGTAGCTTCTCAAGCACAAGTTCCCATACTATTGATCGGCA
ACAAGTTAGATAAGGTGTCATCAGTAATGGATGTAGATGATGAGGACCAA
GATTTGAATGAACATTCTGATAATGAAAAAGTTGTTGCTCTTGAAGAAAT
CGCATTACAACATAGTTTTGTTGGAAGTGTTGCAGTATCAGCCTGTGAAT
GCGATGGCGGAGTACACGCAGCTTTCCGCTCGCTTCTCCGGTTCCTTTTA
CACAAGAAAGCGCCAAAGAAAGTAAAAGACCGTGAACGAAGTGAGGGCAA
TGGGAACCACTTAATCAGCATTTTTAGTGATCCAAATCAACATGGCGCAT
TTACAAGGAATATGGGCAGCGTTGATGACCATGTCTATGAACCTTTGAAA
ATCACACGTATTCCGGAGatCGATCAAATAGTAGAGGCAGCCGACAAGAA
CGTTCGTACTGTTGAATTCACCAGTGTGGGGTTACTGGTGGCTGTGAAGA
ACTTTAAGAAATCATGTTGTGTGTCTGGAATCACTGATAATAACAAATCG
AGCATCGAGGAATGTGTGACCAGTCTAAAGGATAGTTTACGGAACGGGAA
AGAAGAAGACGTTTTACTGGCGTCAGAAGAAGCTGGCTACATCAAACTGA
GCATACCTGATGATGCAGAGGTACCTGGAACACTTAAAAGGGTACTCAAT
ATCTACGATAAAGAGGTCtgcaagaaaacaagaaaagtgTTGTCTCAATG
TCCCACACTGAAAGTACAATTATATGATCAAGTTAAAGAACTTGAACGAG
AATCTGAAACATTATTAGATAAAGGTTCCAGTGTTGGTTTGAATAAGAAA
CAGTTAAGAGTGGCTGTTCAAAGTATGGAAGATAATATAGAAAAGATAAA
AGACACTATCGCTTTAGCTGACGAAGCAATGCGAATTACAGACGATCAAT
TTAAGAGAATCAAAAACGCCATGATGTGGTAAATATATTTGGGTGTAGGC
TTCCAGCATACTCTGATTTGTTTTGTTACAAGGGATACAATTCATCCTTA
AATTTACCTCCGCTTAGCAATTTTTTGTTGGGAGGGtctgaaatctttta
aaaatatgataaacgggaa
Run BLAST on NCBI

transcript from alignment at scaffold_108:147893..165186+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046237 ID=TCONS_00046237|Name=TCONS_00046237|organism=Clytia hemisphaerica|type=transcript|length=17294bp|location=Sequence derived from alignment at scaffold_108:147893..165186+ (Clytia hemisphaerica)
CTGAAAATTAAAGTCCATGTCCCAAAACAACTTATCAATTGTAAACAGCC
CTCGATAGCAACCAAGGAACTTCAGCAGTTCAGCAGACTTCACCAGTTGT
CTGCCTTTCTCACAAAATGTTTGTACACTTTTCTATTCCGACGAAGATCC
CCGGTATTTTTTATTGGTCAAGGTAGCTATAGAGCatccaattttgtttt
ttataagctaATATGACAGTGTCATTTTCTGTTTTGGGCAGCTTTGATTG
AGCCTGGCTGATTAGAATtgtctctttttttttaatgctTTACAATTTTC
CATATTTAATGAAGGAGAACCTTTTATGTCTTCTTAATGTTTGCATCAAC
CCTCACTCTTAAACAGACCATACATAAGAGACCCTTGACTTGAATCTGTG
ATGACTGCGTGTCAGATCAGATCAGAACACAGCTGCCAGCTGGAAAGGAG
GGGAATGTTACTCCAACTTAACTGGGAAAAGTTAGAGGCAGCAGATCTCA
AACCTCAAATCTACGCCGGAGATATCTGGCTCACAAACCGCAATTTCCAG
ACTGGCACAGCtgagatagacctttttttaaaccagGCTTACCCAATCGA
TGAAATCGATACAGGAAATcaatcgatattaatcgattttaatcgataat
aatcgataGTGATCGATAattaatcgataaacaatcgatagCCAATCAAT
ACTAAGACTTTACGTTCTTATCGATTGGATTCGATTGTTATCAATTGCTA
TCGATTAATCGCTGATTGCTttcgattgttatcgattaatatcgatttCT
TTATATTCGCTAAAAACGCAACCCTACCGTGGTTTTTCTAATNTACACTG
TTTCTAATCCtgtaaattttgtttaaaagaaaacttaaatGAACTCTAAC
CAAATAGTTGAAAATACTGAATATTCACTTTATTTTTCGAGTCCTAATTT
TATCCCCTCTATTCTAAGGTCCCACCACCCCGCTTCTTAATTTCGGAATT
TATGTTTGTGACCCCTAAGGCCGATGGTCGTCGAATAATACTGAGTGGGT
GACCTCTATAATCCCCGTAttgttttttcaggaaaatccCTCATTTTACT
CTAGCCTTTATTTTAGCCTTAATTCACATTATCAGGGGCtttcattgagt
ttcaagcccgaagggctagaggccaatctttaacccttctcaggcaacaT
AAATTGAACCACTTATTATTTCCCATCATCCAAAACTCATCATTAAGACG
GATtatatctagtggttcctttgttttagaGGACTACGCTtgttgaaatc
tagcgatagattttagttttaatccggcgtttgtatgaaaaccacgcgct
ggcgttttggatgggaaataagtggtttcatttcccatccaagattCTCG
ACTCTCCCTTTGGGCTAGAACTCAATGAATACCCAGCCCTTTTATACATT
TGTATACATCTTTGGGTAGCTTATTCTCACATTCCGGGATTCACTGAGGA
AACAAGACGCTAATTATAACCTCGAATAAGGACAAAACGATGGTTTTTGG
CACTGCAAGCGATCATatagtctgtacacaaacccgattTCTAtggataa
tttcaaaattcattgtcgtactaccttaagggaagaaattttcacggaAC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAGGACAAAACGATGATTTTTGGCACTGCAAGCGATCAT
atagtctgtacacaaacccgattTCTAtggataatttcaaaattcattgt
cgtACTACCTTAAGGTAACAAATTTTCAcggaacaaattttcgcggaatt
taatttcgcggtttttcggcaAATCTGCGAAACACGACTATTTTcaggat
taaaaaaaatcacccgaaaattggtatttttagggcaaaataggtcttcc
cttaaagtacgctacgatattatcgtgagatacactctggtacacagAGT
AGCGATCATACATACAGAAAATTAGCACAATCGATCGCAATCAATTTtaa
tcgataacaatcgaatTCAATCGATGGCTAATCAATAATAATCGAATTTA
ATCGATGGCTAATTGATAATAATCGAATTTAATCGATGAAAATCGATACC
AAtcgataataaaattttacgttCCTATCGATTGGCCATCGATTAGTAAT
CGATCGATCATCGATTACGAACGACTTTTATCGATTGACATCGATTAAAT
CGACAATCGATGTTATCCATTGGGTACGCCTggtttaaagaggcagccat
gttgaataattatactccagcataaaaacaatgatacacagtgatacagc
catgcataattactgtatcatgcattaaaaattatgcatggctgtatcat
tgtttttatgctggagtacataattattcaacatggctggctctttaaaa
aaaggtctattataagAGCTTCCTCTTGAAAAAAGAGACCCCGACCCTGt
gttgatttttagtttgattgTTATTTGTCTTATGTGTCCAGTGTCAAAAA
GTACAGTGCCAAAAAGTACTGTTAGATAGTTGTTAATAAAGGGAGATCAC
GATTCAATACTCCCCATTCAATATAACAATATAGACTGTGTTGTGTGTGT
TAGTTAGTTTGTGTTTTTCTCCtataaaaaaggtttattaCATCTTACTT
TGTGATTATTACATCAATCCAATACAAATGTCTGTTGTTTTTTCGGTGTT
ACATCAAGGGAATTCTCGACAAGGAAAATTTGGGAACTTTCctcaaatat
tgaaaatgtgtgagGCCTGAAGTTCTTTAATTTAGGGTCTATAACTATAA
ATTATGGATATATATGATGAAAAGTTATGTAGGAAAGATTCTTCTCTAAC
AGATTGAAATGATGCTGTAAAAACAAATCAAGTTTTTATACACCACATCA
AGTAGTCTTTGGTGCTCCCCTGGTATGTGCAGGATTTTAAATATCTCAAA
CACTAATCGCAAAACTGCTAATCAATTTGTGAGTATGAAATTGACAAAGC
TAACTTCATTAATGTTaccttttaaaaattaaacagaagAAGTGCAGtgc
aagaaagaaaatgagaCAATTACCGTCAAACTGCTCTAatttgggactat
ctgacaaaacatgggatggcaatttCGCCACCATTTCACTCAAGTCagtt
gatttgagttaatgaacgacgtattgaaaaatatacgatttctctttcac
accgagtaagcttttaaattgaaatacgaaaaaaaatctgtagttaGAGC
ACACACAAATGTCtgaagaagaccatattagtggcaaaacgatggagcgt
ttgacgtcactcgtgcagcaagttacacactcgttatttgttaatccatT
CGGGCGATGTGGTTAGTAagtgggcgttctctaattctccaattggcgtc
tggtcattttgaatgaaaacaaaaaagttaaaaagggcgcgttaTCAGTG
AAAgctatcgtgacatgttatgacagaaagtatgattgataaacttggtt
atcaaaacaaatttgttgtcaaagagattatAACAGCAAGTGAAAATGCA
GGCCAGATATTCAACAGTCCCATTTTTtgaccaattgtcccaagttagag
cagttgaggGTATAGGAAAAGGGTTAAGTGTGGTTTGTAATAAGGATATT
TTCTCAACAGGGCTGACACGGCTTAAAATGGGATAAATTCTTACAAATTT
GGAAATAGGGCCATTCCACAAAATTGTCGACCACAATTTGAGATATGCCT
ATGCTGGCCTATGCCTGATTGAATCGGTGCTATGAAATGGTGCATGGTCC
CTACTGACAGTACCCAGTCAAAAATGAGCGTGACCCAACGTACCCCTTAC
TCTGGAATGGCAGGTACattttcttcaaatatatTATTTCCCTGGATTGA
AATGCCTCTATAGGTGCTACAAAATGGTGAATGGGTCCCAGTATCCTAAA
GTCCCTATTCTCAGTATTTAGTCAAGAATGAGCGTGatgcaggggggggg
gtcagtacacatccaaaattgttaaaaaaatgctccattttggctgattt
tagaacaaaatactaagatttttcaaatatttctttaagggaccaccctt
taattggtattttagtacacatggtactaaaattatttttgagctttttt
gcagtaccaccacgtcactaaatgtcatgatgtctgagattttagtaccg
acccccacCCCCTGCGTGATGTAGTGTACCTCTACTCTCTAACACATCCC
TATGGAAGATTGATAAGGTGTTATCAACATTTTTAATAGGTGTTTCGGGC
ACCTTAGATAGTATAGAAATAAAAAGTATTTAAAGTAAATAAGAGAGTCA
AAGAAAGTTAGCTAAAAGTTGGCTAAATTGAAAGTAGAAGCTTAGAAGCT
TTATGTGACAGAACAACTAGTTGCAGATTATCAGAACTGGATCAACAGCT
TTTTTGTAGTCCAGTCTTTTATGCCCTACTCTTAATAAAAACTTTTGTAG
AATGAACAACAAAATCAGTCAATAATACACTCCGCTACAAGTCCTAATGG
ATAGTTGATATTGATGTTGTAGCCTACTTACTGTCACATGACAACATAAA
TTGTCTTCATTTTGTCTTAAATTACTTTCTCTTCTTGGTCATTATAGGTT
GACCAGATTATGAATCGTATATGGTTAGGAGAagaaatataaaacaaaaa
gatGGGGGCTGGTGCTTCAAATATGTTTTCACAAAGTATGTTTTTAAATT
CATAGAGACTAACTAGTTAATTTAATAATTCCCAAGTATCTTTTACTGGA
TAGCTTatgatttaaatttattttatttatttttttagtcTTTAAAAACC
ATTAggagttaaaaaaactttaaattcgAGAGAATCTGAGCTCCTTAGTT
GTGCTGTTTCTAACTGTACATATGTGCACTCAAAGTGGAAATGAATCTAA
ACTTTATAGTCCAGTGGCTTATCACAATAATACTTCAGTTTGtgaaaaaa
gcatgaaactttgcacagACATGCACAATTGTattctgaacaaaaaaatt
gacagagaCACGTCTGAAAACCACGTgactgctgacgtcagcactttttt
gctgacgtcatgaaattttttgaaggtATCCAAACTATCAAGTATTATAT
ACCATTGGAAAGGAAATTCAATTCTGAACAACTCTTTTGTCTACAGTTTT
TGATTAAAAcgaagccaataaaagttagaAGCCTCTGAAGttgacttgtg
acgtcatcaaaaattttcaaaaaatttatagtTACAAACTATCaagtatt
atataccgttggaaaggaaatttcatcctgaacaacttttttgcttacag
tttttcatgaaaataatgtcaataaaagttaaaaaagacaaaaaattttc
tcatgTATTACAATATACAAAGTTGGAAAGGATAATTCATGCTGAATACA
TTTTTGCTTACATTTTATTATGAAAACTACTCAATAAAAACTAGATGTCA
AAGTGGACGCTTGTAGTCAAAAGTAGTCAGTATCTTTCTACCAATTAAAA
TATTTACGCTAAGAAACCTTACCTTTTCGCcattatttttccttcaaaac
tgAAACAACGGACGGAAACCTAATACTAATAGGCTAATCACTAACACTAT
ATACTCTAACCACAGCATTAAAGATCCTCTGACGCAATGGAAAATAAAGA
GATaatttaaataaagaataatttCAGGCTAGGTAACTAAACGTTAAAAA
TTATTCCACGATCATAAAATATCTTCGGCTGGTTGGAGTAGCAATTGAAG
GTGGTCAATGTCTTAGCTGGAGCGTTGATATTCACAAATGCTGGCCCATC
GATAACTTTCATGTCGACTTGAGGTGCCTCCGTGTCTGGTTCGCCAACAT
CTTTCTTGAGACAAGTTACAAAATCGGACTTGGCAGTGCATTTCCTCAGT
CTGCCATATTCTGGGCGATAGGGTACCCATAATTTTTGTGCGAAAAGAAG
TTTTGAAGATCTCCTTTTCGTAACTGGTAAGCGATAAAGAGGAGAGAGAA
AAATCTCCTGTCTGCAGTTAAGCTTTGAATTTGGCTCACATGGACAGATT
GGACTGCTTGAAAATGAGGAGCTTGTTCTTTGGAATCACGTCATACTGGG
ACTTCTTCTCGCTTTGGAGTCGATCTTTGATAAAGGTTTGAAATTGATTG
Ctgcagccaattcgattgacttcaaaatatgccatttttgccctgattac
caatagacgatatcggcttaacgagaaaactcagatttgatccccgaata
tttcccacaatgctttgcgcggaaaaaatttcaccgtgaacttttttccg
cgcaaagaattgtgggcaatattcgggaatcaaatctgagttttcacgtt
aagccgatatcgtctattatttTGCAtttgattgacaaaaatttggcttt
caatttcgttTTCAGCAAAAACTGtaggcaaaaaagttgttcagaattGA
GTTTCCTTTCCAATGGTATATAATACTTGATGGTTTGCAtaccttcaaaa
aatttttcacgacgtcagcaaaaaagtgctgacgtcagcagtcACGTGGT
TTTCAGACGTGtctctgtcaatttttttgttcagaatACAATTGTGCATG
TctgtgcaaagtttcatgcttttttcaCAAACTGAAGTATTGTTATGATA
TTTTGGTCTAACAGACTAAACTATTAAGCATAGAAAGAAGAAGGCCTAAC
TAAAACTTTCCACTTTCAAAAGCTTAAAGGTTCCCATTTTGTATATTCCA
AACCCAGTTCAAACTTTTAATACTTTAAAACTGGTACACTTTCTTTGAAC
ACTTGGaattcttctgaaaatttattGTCAAAATGAACTTCTTAATTTTA
CTTAAAAGCTGATGATATCATCATCATTTATTATTATACTTGTGTTTTAC
GTGACAAGTTACTCTTGTCATTTTAGATCCAATGAAGAAGAATTATCCTA
TTGAGGATGTTCCAACCTTCAAAATTGTCTTGGTTGGTAAGCCAtctatt
tctttttgttatttatactaggcttttccagaaatagtctgtgtcccccc
ccccctcctgttgaggatatcagaTATAGgaggttaacgatttttgttca
atagtggatatccaggggtttaAATATCTACAAGAGAGCGGATAttcagg
gggtaaagtgtcttcaagtaaaaaaatacgatatccaggggtacgtaagc
atctttataagagaggatttCCAAGAATATCCAGGTGGTTTgatactttg
aaaaatcaatatcctcaaaaGTGGGGGTAAAATTTGACCCTGTCataatc
ttttaaaagaaaatatcattAACTTTTTACATTTTGATGAACACTTTCAT
AATTGTAATCTTTCCAATAATACAAGTTTATACAAGTTTATTCATTATAA
TAAAGTGAAAAACTTTGTTTATTTGCTTTGGTTTGTATTATATCTATAGG
TGATTCTAATGCTGGGAAGACTTCAATCTTTCTTCGATACACCAGAGAAC
AGTTTGATTATAGTTACCAACCCACCATGAATGTTAACATTGGTAATGTG
ACTAAAAAAGTGCAATTTCCATTCGAAACTTTGGTCTCTGTTTCACTATG
GGATTTACCAGGGAGAGAAGAAATTGATTTGCGGAGAAGCTATTATAAAG
ATATTGATGCAGCTATTGGTATGTTAAAATCCTGGCATTCAAAATGGATT
TTAATACgcattatgaaaatttttagaattagtACTTTTAACTAATGAAG
GCTTTTGAATTGTTTAAtcctttttaaatgaaatttgcttttttcaacat
tcgaAAAAATTGTATGTGGAGGTAATCCACTCAGTGCAATAcgggatttt
ttttaaactgacgtgtataaagatatttcaaatgccaagattttgacgtc
aatatttatttttatttattttttaatactaatacttttattcatttttt
gacACTAAAGTATTCTTTAATATGGTCTACATTTAAACAAGCTAAATTAT
ATTATTCTTAAAAAGTTAAGTTACAACTTAACCTTGTTTGAAATTCTTTA
TTGTCATAGTTGTGGTTGATTTGAGTGATGATGGTAGTTTAGAGATGGCA
GGGACCTGGAAACAAGACATTAATAACAACAGTACATTGACCACAGCTGA
TAACAATGGAAACGAGAAAGCACGAAGGAAAAGTGTAGCTTCTCAAGCAC
AAGTTCCCATACTATTGATCGGCAACAAGTTAGATAAGGTGTGTGATGTG
TATACTATCTTTATACTAATCTTTATTAATCGTAACTTTGAAGAAttaaa
ttttgtctttttgtgtatttttgcctttttcgaAATCGTTTGATTTCTGA
CTCACAAATTTAATCTgcgtgaaattttcaaaatcagataTTCGGCATAA
AAGACGctgtaaatttgcaattttcaattaaaaatagTGTATTCAAGAGT
ATTTTCAACTGATTTTTGGCTGattcgtgaaattaaatccacggAAAATT
AATCTATTAAGgagaggccaatttaatttgttgttttacaggcCAAGCTa
accaaaaaagagggtcggtcagtgaaaaaattaaaataaaagtagaattt
cacttatcaaatctcctaaaaatgcagcaaaaactactacatctaAACAA
attgcgaaatagaaaataaaaagacacaaaaattcgaattcatggataaa
atgaaagattgaacataaaattcttaaaacatcATGAAAgaactaccaaa
attttgaaaatttggcagtatGTAAAGCAATTAAAACGAAAATGTActgc
caaaatcaattttatttttatttagatttttggaatttcagggtcgctcg
ggcccgtaaaacaacttaACAAATTGGTCGCCCCTAAGCCTGAGTCAACA
TAGTTGAGGCTAAGTTACAAAACATATGTGTCTGTAATGGGAGGAGAAAA
ATCTTTTCTCTCAATATTAATGTTATcgtaatcttctttttttttgtaaa
actcAGGTGTCATCAGTAATGGATGTAGATGATGAGGACCAAGATTTGAA
TGAACATTCTGATAATGAAAAAGTTGTTGCTCTTGAAGAAATCGCATTAC
AACATAGTTTTGTTGGAAGGTTTGTATACTTATGAAATTATCTTCCCAAC
ATAGTAGTCATAATAGTGAGTTATACTTTTTTACTAAGTCTGTAGAATAG
TAGATAACCAATGCGAAAGTCGTGAGTTCGGATCCTCAGATGAACGCTAA
TCTATACATAATATGAAATTGCTCACTGATCTTGCataaaatacaaataa
attacTTGGACCATCATATCAAAATTGTAGACTATTCGTTTAGATCttta
ttcaatattttcaacGTCAAGGCGTTCTAAATTGAGGGTCTGCATTATgt
aattttttggaaagaagACAGTCCATTGTCAAATGGAACAATCAACTGAC
ATGTCATATTTTTCATAGCGATTCTGACATCCTCTTAAATACCGCTAAAT
TAGCTTTAAGTGTTTCCTTACTAAATTGAGGCCGTTGTGCGATTCTCATG
TTAACTCTGTACTGTCTTGgatttctctttatttataagcaATTTGACCA
AAGTGAAGCACTTGTTCATACTTCCAAAATCGTTTAATTTTTTCGATTAT
TGTTTACATGAGATCCAAGAAATGTGATCAAAAGCTAAGTTCATGTGGTA
TCTAAGAAAAGATGATATATGGTGGTCTGAGTATTTAGCAATCTATTAAG
CAATCTCgaatttcttaactttttttcgaattttcttaacAGTGTTGCAG
TATCAGCCTGTGAATGCGATGGCGGAGTACACGCAGCTTTCCGCTCGCTT
CTCCGGTTCCTTTTACACAAGAAAGCGCCAAAGAAAGTAAAAGACCGTGA
ACGAAGTGAGGGCAATGGGAACCACTTAATCAGCATTTTTAGTGATCCAA
ATCAACATGGCGCATTTACAAGGAATATGGGCAGCGTTGATGACCATGTC
TATGAACCTTTGAAAATCACACGTATTCCGGAGGTACCGAAATTTTTTGT
GGTGTTAATGTCTCCTTAACGTTGTAGTAGCTCAGACTGTATTTAAcaat
atttaaagatttttaaaacaacattgcaaccaaatttcttataaatttaG
AAATACAGTGCACTTGCGAATGAACACTGCTAAAGGCAACATAATCCTTA
GATATGATATCACCAGGGTTACAAAAAACTacaaaatgcatccagtgaac
tGTTCTTCATTCACATAGACTGCTTTTGAGACTTTTAGTGACCGTAGCgt
aaaggtagagcatccagctacggtgcgcaaggttgtgggttcgatcctca
gccgggtcataccaaagattcccaaaatggtacttgatgcctctctgctt
gatcaAGGgcaagtggagaaatccagggaaaggaatggcgtcctccccta
ccttcgggtagacagctatacgaaaagggagccttcgggtcgccttcgac
tgcggtcgcaaacttactttttGGAGACTAAAAAACCGTAAAGTGTAAAA
GATGTTTGCTTTAAAATGGGAGAGTTGCACATCTAAACCTAACtacttta
aaatcaatttttaggNtcgactgcggtcgcaaacttactttttGGAGACT
AAAAAACCGTAAAGTGTAAAAGATGTTTGCTTTAAGATGGGAGAGTTGCA
CATCTAAACCCAACtactttaaaatcaatttttagatCGATCAAATAGTA
GAGGCAGCCGACAAGAACGTTCGTACTGTTGAATTCACCAGTGTGGGGTT
ACTGGTGGCTGTGAAGAACTTTAAGAAATCATGTTGTGTGTCTGGAATCA
CTGATAATAACAAATCGAGCATCGAGGAATGTGTGACCAGTCTAAAGGAT
AGTTTACGGAACGGGAAAGAAGAAGACGTTTTACTGGTTAGTATTTCTTc
gtatttttggacctaccgccGGGTGCCCcagtggaggttctataaattaa
cccatgtccgttcgttcgtcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNggcctgaatggtttaagtgattttcgtatttggggaca
ttcctttttaccattttacattattcaacacacaagctttatttttccat
tctgaatttttgtaccattattgtcatttttttcttattttcatctgatg
ttaatcattaggtaggtccattcagcatgttgcttgttcttCAGGAATTT
TCGTCTTTACTAATGGAGATTTTCATAATGACAATAATGATCtagtttag
ctttttttgtctcTTACAAACCATACAGGAGCATTTTTCCCATTGGGCTT
ACTTCATTATCTTCGTATTAAAGTCATTTTATAGAAATTCAGCTCCCCTC
GATTCTTGATTAATCTTTGAATATCCTCCTATATTTTAGTTCACACCCAG
AGCCACTTGCTCAAATAATACACAAGTGAACTGAGGGATTGTAACGagct
aaagaaatttcaaactctcCCCCTCCAGACGTGGCTTTTTGACTTTGTCA
AAACCTTAGATCTCACCAAATGTGAAAAGCCTTTCCCCTTCAAAGAATGG
ACCCCAATTGGATGTCACAGCTCCTCGACACGTGTTTTTTATCATTTAAA
TACACCCATTCTACATGCCGTCTTTCTTAGATAAGAAGTTACAGCACTGT
GAAGCAGttcatttttgctgttttttttcattctcattTTTGGTCGATTT
AGGCCTACTTTAAAGGGCTTTAACCTTTTATCTAACTAAGAAAATACGAA
AGATCAGAAAACAGATTTGAAATCACTAAGGTGCAAATATTTATATAAGT
CAGTTGTCATGATTTTCGAACCGGTAGAAAAAGGTGCACCCACTTACTTT
TGTGGTAGATTTGAACAATAaatattattatccatataacggtcattaag
taagccattaaaggttcaatcgacgggcggtattgaaaggttttgtgact
caaattgtcatacccgcgctgaggaaACTTAAGCGCCAGGCTTCAGAGGG
CTAAAATATCATTAACGGCCCGGGTATtgatgatatgcaccactgcaatg
tcttctgacattacatcacagacccaatagctgattggttgtaagtgacg
taaaatcagtcaatacgtcactttcaaccaatcagctgttggggccgtgg
aagacattgcaatggtgcatatcatgaatagggcAATAatgtcatttgcg
gcccgctcggaattggattgaagtcgttgcattgaagcgaagagactaaa
ctaacgtcagaaaaaaacactttttggtcatttgcagCCCGCTCGCAACG
tgctaaaaatttgttgaagacattgcattgaagcaAAAAGTTGGCTGACG
CTAGCAAAAAAtgttgtttgaatgtccgatatggataataataataatag
cgttaagttttcgttcgttgttgtcattaattctgcccttgcaatTTGAT
TACtagccctctagtgccatttgcgccctccgcttcgcgtcgggcccaaa
tgacactatcgggcgaataatcaaactacgcgggcagaaaataacaacaa
cgacctcaaactgaacgctattgttataataTTAAGAATCGTGGTGCTTT
TTATCGTCATTCTAGGCGTCAGAAGAAGCTGGCTACATCAAACTGAGCAT
ACCTGATGATGCAGAGGTACCTGGAACACTTAAAAGGGTACTCAATATCT
ACGATAAAGAGGTACATATTTcaaatacatattttttcttctaATAAGCA
AGTGTCTTCCCCCTACTGTTCTTaaaggggggtttgtacttttatgGTGT
GACGGAATTGGCCCTTTTGTAGTACTGtaaaagaggcccccccagcggac
ccaaaattcacgccatcacgccaattttttttcgatttcacgccatcacg
cctgaaaaatttgattttcacgatcacgccaaaaatttttcgatttcacg
ccatcacgccaattttttttcgatttcacgccatcacgcctgaaaaattt
gattttcacgatcacgccaaaaatttttcgatttcacgccattatgccta
gaaaatttagttttcatgctcataatttttgttatataaaCTGTGTGCTT
ggtcgtcaatcagtttttcatcggcattctcatacgcgtaattaagtcaa
gattatatcatttttcctatcggaaacacccgaaaaatctggaagaaatt
tgacctctgtttttctatttttagtaatacacaggggtaaattccatttt
tttcgggtgttttcgataggaaaaatgacgtaatcttgacttatgcatat
caagaATTGTTGTACAActggtcacatcaaagggcacCGGTTTGAGTAAA
TTAACAAAGCCCATCATGGTTGGgtaacggagaaaatttttgaattttga
agggctcaaagtgctattttaggatccatttcaattcaatttgaaaaata
attcatgtaaaaataatggaaatcttttaaaagtacaagcaacatgaggg
ggcattaattgtgaattagcgtgaataattttcaaaaggggaacgaggag
gcgcaaccatggtttgcaacgacaggagaaattttcaatttagtatggct
aaaatcgccctcatttactctcttttttccaagatatggtttaaacatca
caggattcctttgatcaatctgcttaaaattacacctcataataaacctg
ttgcttctttctgtttatgGCTTTGCTATAAATGTATATTTTCCTAAAAT
AAAGGAACTGGTGTCTTTGGATGCATctaagaataagcatctaagaaaga
gagggaaaattttcaattttcgaccctctcgtagcattcgactttatttt
gaagactagctagcaactgctaaaaacaatcggaagttacaaggataaat
ggcagatgaatagaactgtttgcaccgtttctttaatgtttaaaaatgac
ATCTAATctataggaggccccaccatagtCGGGGctgaccaagaaaattt
tgaaatttaaaccctctaaattggctaaaatggacatagaaatacgattc
aactaataaatataattttcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgcacttcatttt
cacgccatcacgccgtttttttcaaaatttcacgccatcacgccacgaaa
aaccctccatcacgccatcacgtcaaccgctgggggggcctcgtAAAagt
gacgggaaaacggtattttgaaATCAGAGGGTGACTGTATTTAGCCTTAA
TTTTTGTCAGTATTCCTGTATTATAACctctacaaaccggtgtgacgagg
ttattatatttttcaattttcgggattccggaattcagcaaaatatttga
cgggaaaacggtatttcggacCCCTACAAACCCCTTAAACAATGAGCTat
ttctgaaaataagaacatgttaagaacattttcaggcttaaaactaaaaa
agttaagaccatctgaaggcttcaaaaattttggatgttcttataaaaaa
acttgtagtgCAAGAGATGATGATTCATGATTTCactaaatttttataaa
actttttatttattattctgCCATTTTCAATTCGTTATAGGTCtgcaaga
aaacaagaaaagtgTTGTCTCAATGTCCCACACTGAAAGTACAATTATAT
GATCAAGTTAAAGAACTTGAACGAGAATCTGAAACATTATTAGATAAAGG
TTCCAGTGTTGGTTTGAATAAGAAACAGTTAAGAGTGGCTGTTCAAAGTA
TGGAAGATAATATAGAAAAGATAAAAGACACTATCGCTTTAGCTGACGAA
GCAATGCGAATTACAGACGATCAATTTAAGAGAATCAAAAACGCCATGAT
GTGGTAAATATATTTGGGTGTAGGCTTCCAGCATACTCTGATTTGTTTTG
TTACAAGGGATACAATTCATCCTTAAATTTACCTCCGCTTAGCAATTTTT
TGTTGGGAGGGtctgaaatcttttaaaaatatgataaacgggaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029533XLOC_029533Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046237-exon-scaffold_108-1491911889:147893..148010TCONS_00046237-exon-scaffold_108-1491911889:147893..148010Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1510915933:147893..148010TCONS_00046237-exon-scaffold_108-1510915933:147893..148010Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1575043694:147893..148010TCONS_00046237-exon-scaffold_108-1575043694:147893..148010Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1491911889:153240..153327TCONS_00046237-exon-scaffold_108-1491911889:153240..153327Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1510915933:153240..153327TCONS_00046237-exon-scaffold_108-1510915933:153240..153327Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1575043694:153240..153327TCONS_00046237-exon-scaffold_108-1575043694:153240..153327Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1491911889:155569..155628TCONS_00046237-exon-scaffold_108-1491911889:155569..155628Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1510915933:155569..155628TCONS_00046237-exon-scaffold_108-1510915933:155569..155628Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1575043694:155569..155628TCONS_00046237-exon-scaffold_108-1575043694:155569..155628Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1491911889:156092..156310TCONS_00046237-exon-scaffold_108-1491911889:156092..156310Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1510915933:156092..156310TCONS_00046237-exon-scaffold_108-1510915933:156092..156310Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1575043694:156092..156310TCONS_00046237-exon-scaffold_108-1575043694:156092..156310Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1491911889:156702..156880TCONS_00046237-exon-scaffold_108-1491911889:156702..156880Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1510915933:156702..156880TCONS_00046237-exon-scaffold_108-1510915933:156702..156880Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1575043694:156702..156880TCONS_00046237-exon-scaffold_108-1575043694:156702..156880Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1491911889:157649..157761TCONS_00046237-exon-scaffold_108-1491911889:157649..157761Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1510915933:157649..157761TCONS_00046237-exon-scaffold_108-1510915933:157649..157761Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1575043694:157649..157761TCONS_00046237-exon-scaffold_108-1575043694:157649..157761Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1491911889:158435..158675TCONS_00046237-exon-scaffold_108-1491911889:158435..158675Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1510915933:158435..158675TCONS_00046237-exon-scaffold_108-1510915933:158435..158675Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1575043694:158435..158675TCONS_00046237-exon-scaffold_108-1575043694:158435..158675Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1491911889:159378..159578TCONS_00046237-exon-scaffold_108-1491911889:159378..159578Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1510915933:159378..159578TCONS_00046237-exon-scaffold_108-1510915933:159378..159578Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1575043694:159378..159578TCONS_00046237-exon-scaffold_108-1575043694:159378..159578Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1491911889:162608..162703TCONS_00046237-exon-scaffold_108-1491911889:162608..162703Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1510915933:162608..162703TCONS_00046237-exon-scaffold_108-1510915933:162608..162703Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1575043694:162608..162703TCONS_00046237-exon-scaffold_108-1575043694:162608..162703Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1491911889:164783..165186TCONS_00046237-exon-scaffold_108-1491911889:164783..165186Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1510915933:164783..165186TCONS_00046237-exon-scaffold_108-1510915933:164783..165186Clytia hemisphaericaexon
TCONS_00046237-exon-scaffold_108-1575043694:164783..165186TCONS_00046237-exon-scaffold_108-1575043694:164783..165186Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_108supercontigscaffold_108:147893..165186 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.58056	5.01272	8.25403	7.72863	60.6825	53.499	35.6007	44.8118	16.4341	16.482	12.0857	20.3453	4.7157	5.97653	3.43946	2.10918	2.59834	3.97131	6.43891	10.5881	10.8664	11.3702	6.68186	1.67853	24.7212	17.4154	8.02955	9.32549	2.69208	2.80903
Blast
[Close]
BLAST of TCONS_00046237 vs. Swiss-Prot (Human)
Match: RAB7L (Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB29 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.328e-16
Identity = 44/139 (31.65%), Postives = 75/139 (53.96%), Query Frame = 2 
Query:  248 FKIVLVGDSNAGKTSIFLRYTREQFDYSYQPTMNVNIGNVTKKVQFPFETLVSVSLWDLPGREEI-DLRRSYYKDIDAAIVVVDLSDDGSLEMAGTWKQDINNNSTLTTADNNGNEKARRKSVASQAQVPILLIGNKLD 661
            FK+++VGD+  GKTS+  RY+++ F   Y+ T+ V+     K +Q+    +V + LWD+ G+E    + R YY+D  A +++ D+++  +   +  WKQD+++  TL     NG              VP LL+ NK D
Sbjct:    8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFA--LKVLQWSDYEIVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLP----NGEP------------VPCLLLANKCD 128
The following BLAST results are available for this feature:
BLAST of TCONS_00046237 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB7L6.328e-1631.65Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB... [more]
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