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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046238 ID=TCONS_00046238|Name=TCONS_00046238|organism=Clytia hemisphaerica|type=transcript|length=1112bp
tttgaatgaaaacaaaaaagttaaaaagggcgcgttaTCAGTGAAAgcta
tcgtgacatgttatgacagaaagtatgattgataaacttggttatcaaaa
caaatttgttgtcaaagagattatAACAGCAAGTGAAAATGCAGGCCAGA
TATTCAACAGTCCCATTTTTtgaccaattgtcccaagttagagcagttga
ggGTATAGGAAAAGGGTTAAGTGTGGTTTGTAATAAGGATATTTTCTCAA
CAGGGCTGACACGGCTTAAAATGGGATAAATTCTTACAAATTTGGAAATA
GGGCCATTCCACAAAATTGTCGACCACAATTTGAGATATGCCTATGCTGG
CCTATGCCTGATTGAATCGGTGCTATGAAATGGTGCATGGTCCCTACTGA
CAGTACCCAGTCAAAAATGAGCGTGACCCAACGTACCCCTTACTCTGGAA
TGGCAGGTACattttcttcaaatatatTATTTCCCTGGATTGAAATGCCT
CTATAGGTGCTACAAAATGGTGAATGGGTCCCAGTATCCTAAAGTCCCTA
TTCTCAGTATTTAGTCAAGAATGAGCGTGatgcaggggggggggtcagta
cacatccaaaattgttaaaaaaatgctccattttggctgattttagaaca
aaatactaagatttttcaaatatttctttaagggaccaccctttaattgg
tattttagtacacatggtactaaaattatttttgagcttttttgcagtac
caccacgtcactaaatgtcatgatgtctgagattttagtaccgaccccca
cCCCCTGCGTGATGTAGTGTACCTCTACTCTCTAACACATCCCTATGGAA
GATTGATAAGGTGTTATCAACATTTTTAATAGGTGTTTCGGGCACCTTAG
ATAGTATAGAAATAAAAAGTATTTAAAGTAAATAAGAGAGTCAAAGAAAG
TTAGCTAAAAGTTGGCTAAATTGAAAGTAGAAGCTTAGAAGCTTTATGTG
ACAGAACAACTAGTTGCAGATTATCAGAACTGGATCAACAGCTTTTTTGT
AGTCCAGTCTTTTATGCCCTACTCTTAATAAAAACTTTTGTAGAATGAAC
AACAAAATCAGT Run BLAST on NCBI transcript from alignment at scaffold_108:152000..153111+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046238 ID=TCONS_00046238|Name=TCONS_00046238|organism=Clytia hemisphaerica|type=transcript|length=1112bp|location=Sequence derived from alignment at scaffold_108:152000..153111+ (Clytia hemisphaerica)
tttgaatgaaaacaaaaaagttaaaaagggcgcgttaTCAGTGAAAgcta
tcgtgacatgttatgacagaaagtatgattgataaacttggttatcaaaa
caaatttgttgtcaaagagattatAACAGCAAGTGAAAATGCAGGCCAGA
TATTCAACAGTCCCATTTTTtgaccaattgtcccaagttagagcagttga
ggGTATAGGAAAAGGGTTAAGTGTGGTTTGTAATAAGGATATTTTCTCAA
CAGGGCTGACACGGCTTAAAATGGGATAAATTCTTACAAATTTGGAAATA
GGGCCATTCCACAAAATTGTCGACCACAATTTGAGATATGCCTATGCTGG
CCTATGCCTGATTGAATCGGTGCTATGAAATGGTGCATGGTCCCTACTGA
CAGTACCCAGTCAAAAATGAGCGTGACCCAACGTACCCCTTACTCTGGAA
TGGCAGGTACattttcttcaaatatatTATTTCCCTGGATTGAAATGCCT
CTATAGGTGCTACAAAATGGTGAATGGGTCCCAGTATCCTAAAGTCCCTA
TTCTCAGTATTTAGTCAAGAATGAGCGTGatgcaggggggggggtcagta
cacatccaaaattgttaaaaaaatgctccattttggctgattttagaaca
aaatactaagatttttcaaatatttctttaagggaccaccctttaattgg
tattttagtacacatggtactaaaattatttttgagcttttttgcagtac
caccacgtcactaaatgtcatgatgtctgagattttagtaccgaccccca
cCCCCTGCGTGATGTAGTGTACCTCTACTCTCTAACACATCCCTATGGAA
GATTGATAAGGTGTTATCAACATTTTTAATAGGTGTTTCGGGCACCTTAG
ATAGTATAGAAATAAAAAGTATTTAAAGTAAATAAGAGAGTCAAAGAAAG
TTAGCTAAAAGTTGGCTAAATTGAAAGTAGAAGCTTAGAAGCTTTATGTG
ACAGAACAACTAGTTGCAGATTATCAGAACTGGATCAACAGCTTTTTTGT
AGTCCAGTCTTTTATGCCCTACTCTTAATAAAAACTTTTGTAGAATGAAC
AACAAAATCAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046238-exon-scaffold_108-1491911889:152000..153111 | TCONS_00046238-exon-scaffold_108-1491911889:152000..153111 | Clytia hemisphaerica | exon |
| TCONS_00046238-exon-scaffold_108-1510915933:152000..153111 | TCONS_00046238-exon-scaffold_108-1510915933:152000..153111 | Clytia hemisphaerica | exon |
| TCONS_00046238-exon-scaffold_108-1575043694:152000..153111 | TCONS_00046238-exon-scaffold_108-1575043694:152000..153111 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_108 | supercontig | scaffold_108:152000..153111 + |
Blast
The following BLAST results are available for this feature:
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