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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046240 ID=TCONS_00046240|Name=TCONS_00046240|organism=Clytia hemisphaerica|type=transcript|length=723bp
TGAAAAACAAGTAACAGAGTACATACAATCAGGTCACAAAGTCACAATTA
AatttaaatcttgaaatatgGCTTCGTCTAAATATATCACCATCATTATC
TTTgtattgattttgaaattactGAGTGCAGATGCATGTAGTGCAAATGG
AAGTTATTGTGAGAAGGATTCAGATTGCTGTACAACCACAGATTGGTGTG
TCGGCACACCACCGAATTATTCGGGAGCATGTTGCAGCACCGGTGCTTCA
GATCATGGTGCGACTTGTAATGATCACACTGATTGCTGCTCTGGATCTTG
TAGTGGAACACCAAAACTTTGTGAATGTAAAACCAATGGCTCTGACTGTA
CGTCCGACATTGAATGTTGTTCATATTTATGCAATATTGTTTCCACGCAG
CCCATCGAACGTAGATGCGTAGAACAACAAGATGACCCGATTGGAATGGT
TATAGGTGGAGGAAGTACAGGTCAAGCGACACAACAACCTCTTTCTACTT
AAACTGGAGGTTAGAGCAAAACCATACATACCAAACTCAAACCCAGTCCC
TTAATTCGTTTTTTATTGCTCTAATAACACTCACAAACGTTAATCAATAA
AATTAAAGAATGTTGCAAGTCACTCTGGGTAGGAGATCGTCAAATATTTA
ACAAATACTATATTTagctgaaaaaaattataatcatTGTAAatatctaa
taaaaaaaactacaCTGTGTCCG Run BLAST on NCBI protein sequence of TCONS_00046240-protein >TCONS_00046240-protein ID=TCONS_00046240-protein|Name=TCONS_00046240-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MASSKYITIIIFVLILKLLSADACSANGSYCEKDSDCCTTTDWCVGTPPN
YSGACCSTGASDHGATCNDHTDCCSGSCSGTPKLCECKTNGSDCTSDIEC
CSYLCNIVSTQPIERRCVEQQDDPIGMVIGGGSTGQATQQPLST Run BLAST on NCBI transcript from alignment at scaffold_108:189138..190401+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046240 ID=TCONS_00046240|Name=TCONS_00046240|organism=Clytia hemisphaerica|type=transcript|length=1264bp|location=Sequence derived from alignment at scaffold_108:189138..190401+ (Clytia hemisphaerica)
TGAAAAACAAGTAACAGAGTACATACAATCAGGTCACAAAGTCACAATTA
AatttaaatcttgaaatatgGCTTCGTCTAAATATATCACCATCATTATC
TTTgtattgattttgaaattactGAGTGCAGATGTAAGTATTTTAATCAT
TTTGAATTAGCTAATCATCATATTCTTATTCGGTATTTATTATGGCGTAT
ATTTTGTTTTGTCttacaaaattatttttgcaaaatatctaCACAAAAAG
CTCGTCGGAATAAAAATTTTCACGGTGGTCAAAATAAGCTTTTTTATTAC
CACTTACTTAATGACTTAAATCCATTATCCTGTTCTTTATTATTCTTTTA
GCTTTAGAATAATTTTACTGAACATACATGGGGAGGGGTGGAGGAAATAG
TATCTGCCTTGTCCAGGGGTAAACATGCTCTGTTTGAAGGGTAATTCTGA
ATGTCCAGTGGGTCAACCGATGGTTGTcagggggttagacctgctgtccg
gggggggggtcaaaagtcacaaacACAACGTCCGGGCGGGgttaattttc
aaaagataattcatatcctccatccccaattcaatttttttggaaaagcc
ccTTGTTATTCACGTGTGCGTGCGTTATTTTGTCACGAGgtcattgaaat
attttttgttcccaTTCTTACCAGGCATGTAGTGCAAATGGAAGTTATTG
TGAGAAGGATTCAGATTGCTGTACAACCACAGATTGGTGTGTCGGCACAC
CACCGAATTATTCGGGAGCATGTTGCAGCACCGGTGCTTCAGATCATGGT
GCGACTTGTAATGATCACACTGATTGCTGCTCTGGATCTTGTAGTGGAAC
ACCAAAACTTTGTGAATGTAAAACCAATGGCTCTGACTGTACGTCCGACA
TTGAATGTTGTTCATATTTATGCAATATTGTTTCCACGCAGCCCATCGAA
CGTAGATGCGTAGAACAACAAGATGACCCGATTGGAATGGTTATAGGTGG
AGGAAGTACAGGTCAAGCGACACAACAACCTCTTTCTACTTAAACTGGAG
GTTAGAGCAAAACCATACATACCAAACTCAAACCCAGTCCCTTAATTCGT
TTTTTATTGCTCTAATAACACTCACAAACGTTAATCAATAAAATTAAAGA
ATGTTGCAAGTCACTCTGGGTAGGAGATCGTCAAATATTTAACAAATACT
ATATTTagctgaaaaaaattataatcatTGTAAatatctaataaaaaaaa
ctacaCTGTGTCCG Coding sequence (CDS) from alignment at scaffold_108:189138..190401+ >TCONS_00046240 ID=TCONS_00046240|Name=TCONS_00046240|organism=Clytia hemisphaerica|type=CDS|length=870bp|location=Sequence derived from alignment at scaffold_108:189138..190401+ (Clytia hemisphaerica)
atgGCTTCGTCTAAATATATCACCATCATTATCTTTgtattgattttgaa
attactGAGTGCAGATGCATGTAGTGCAAATGGAAGTTATTGTGAGAAGG
ATTCAGATTGCTGTACAACCACAGATTGGTGTGTCGGCACACCACCGAAT
TATTCGGGAGCATGTTGCAGCACCGGTGCTTCAGATCATGGTGCGACTTG
TAATGATCACACTGATTGCTGCTCTGGATCTTGTAGTGGAACACCAAAAC
TTTGTGAATGTAAAACCAATGGCTCTGACTGTACGTCCGACATTGAATGT
TGTTCATATTTATGCAATATTGTTTCCACGCAGCCCATCGAACGTAGATG
CGTAGAACAACAAGATGACCCGATTGGAATGGTTATAGGTGGAGGAAGTA
CAGGTCAAGCGACACAACAACCTCTTTCTACTTAAatgGCTTCGTCTAAA
TATATCACCATCATTATCTTTgtattgattttgaaattactGAGTGCAGA
TGCATGTAGTGCAAATGGAAGTTATTGTGAGAAGGATTCAGATTGCTGTA
CAACCACAGATTGGTGTGTCGGCACACCACCGAATTATTCGGGAGCATGT
TGCAGCACCGGTGCTTCAGATCATGGTGCGACTTGTAATGATCACACTGA
TTGCTGCTCTGGATCTTGTAGTGGAACACCAAAACTTTGTGAATGTAAAA
CCAATGGCTCTGACTGTACGTCCGACATTGAATGTTGTTCATATTTATGC
AATATTGTTTCCACGCAGCCCATCGAACGTAGATGCGTAGAACAACAAGA
TGACCCGATTGGAATGGTTATAGGTGGAGGAAGTACAGGTCAAGCGACAC
AACAACCTCTTTCTACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046240-exon-scaffold_108-1491911889:189138..189270 | TCONS_00046240-exon-scaffold_108-1491911889:189138..189270 | Clytia hemisphaerica | exon |
| TCONS_00046240-exon-scaffold_108-1510915933:189138..189270 | TCONS_00046240-exon-scaffold_108-1510915933:189138..189270 | Clytia hemisphaerica | exon |
| TCONS_00046240-exon-scaffold_108-1575043694:189138..189270 | TCONS_00046240-exon-scaffold_108-1575043694:189138..189270 | Clytia hemisphaerica | exon |
| TCONS_00046240-exon-scaffold_108-1491911889:189812..190401 | TCONS_00046240-exon-scaffold_108-1491911889:189812..190401 | Clytia hemisphaerica | exon |
| TCONS_00046240-exon-scaffold_108-1510915933:189812..190401 | TCONS_00046240-exon-scaffold_108-1510915933:189812..190401 | Clytia hemisphaerica | exon |
| TCONS_00046240-exon-scaffold_108-1575043694:189812..190401 | TCONS_00046240-exon-scaffold_108-1575043694:189812..190401 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_108 | supercontig | scaffold_108:189138..190401 + |
Blast
The following BLAST results are available for this feature:
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