TCONS_00046242 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046242
Unique NameTCONS_00046242
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2201

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046242 ID=TCONS_00046242|Name=TCONS_00046242|organism=Clytia hemisphaerica|type=transcript|length=2201bp
CTTTCTCAAGTCACCTTCAACCAGACTATATACTATCTTTGACGTATTCG
AGTCAAACCACGCTGATATATTACAAGAAGAAATTTCATGAGCCGTAGCT
CGATCCGCTATCTAATGGAAGAACTTATGTCCCACACTGACTTGAAAACT
CAGAAAAATGTGAAACCACCAAAATACTGATCGTGATTTCCCAGTGTTTT
ACCAGTTGAACACCCCTCCAGTTTCCAGTTGAAGGAGATGGTTCACTCAA
TAACCCCTGAAGATGACATGAAGTTATTTGATAAGAAGCAAAGTGCAAAA
CGTTTTGCGTACAATGGAATGAAGAGCAAAAAGAATAGTTGGGATCAGTT
TGAAGAAGATGGAGACAGTGAGAAATTTGTTCAACAAACCAAAATAATGT
CTCCTAATCACTTATCACATTTAGGGATGAAACACAATCAACGTACGAAA
GACATGATTGACTTGGACAATGTATGGAGCATACGAAATGTTTCTTTAAA
GGCCAACCAATCAGATTCCATATCGAGTAGCAGTCTGGTCAACAAAACAG
ATACTTATTCACGACACAAAGGCTTATTTTCACCTCTTGCAAGGAGAGAT
TCGGGTCAGCGTTCATTTTTATCACAAAAACAACAGCAGCAATCAAGTCA
ACCACAACCACAACCGCCGCAACCACCAACACAACGCTTACACTTATCAT
CTCTTAGCTTTCAAAAGAAGAAGCCTAATGGatacttttgaaaatgtttt
ttatttgaaaattaaattaatcaatttttttttgtaacataAATGTACAT
AATTAATTTAAATGAGGTTGgttttataaaacaaaattgTTGGATTACCG
TTGTCTAGGATATAATTTTCTAGTCGACGGGAATCTCAGTGTACTCTAAG
AATTGCAGCTCAAGGGTGCAGAGATGTCGCAAATACAAAAAAGATGACAA
TAAGGGATGGCATACACGCCTTTccctttataagaatatactttagaata
tccatgatgaaactGGCCAACAAAAACATTACGAATATGCTACGAATACC
ATTTGGCaactgaagctaagaatgctGTTTTAAGAGCCTTTAGCCTGTAA
TTTGCCAATTATTCCCCAGCAATGCTATAAGAAATATTACAAAAGTGGCA
AAAGTTACTTGACGTATACATTGTATGCTAGATATAGGCTGGGTTTGGAT
CTTAatagaatatttcaggatgattttttccaaaaagttaagaatatcca
cgatgaaatttggaaaaacaccattcttataaaaaaagtgtgcaccaata
agttttttttattggcCTTCACAGTCCCTTTCGGTACATTTCGTCCGTGT
AATGGTTTACCTCGATTCAGTCCCTTGGGTGTACATTACTTAGCctataa
ataaaaacataatGGTTATTCAGCTGTCCTGACTGTTTTTTTGAAGTCGT
TTGATTAGTAGTAAAAACGTGGTAAAGTGTAAAtgctttttattgatttt
tttatgatttgagtAGGTATTTCAAAGATAGTGATATAATAGAGTGGTTA
tgcttttaatttattttttcacatattttttaaagatttctaaaacattt
ttttagatttttagctGTAGATATAAGTTATACACTATAGTTTCGACTTT
TAGTGTTTTTCGATTTgagttttttggaaaatatattaAACCTAATTTTT
ACTAATCTTTTAGagtaaagttttgattttgtatgaATTGCATAGTTTTA
TGGGCACGTCTGGgggtaggctgcacgcatcccctctgatatgttttgat
ataaggGGTGCGTATCGTGTTTAAAATTTCCGTCGAGGAGTTGcccttat
tattattattataggaGTATATTTCGccggtctattgacctctatgaaac
aatctaatTGTCTGTGTGTTTTTGAAGGGTAATATTAGTTTGCCATTTTT
GTTAAAACAAGCGCTCCATCGCAGATGATTAACTCGCAAGCATGCCAATC
CTTCTCGAAGCGCAATAAATTTAAACAGGTTACCCCAATTTTGGAataac
tctcggacgggaattttatataTGATGCGCACCCACTATATCGTAATCGA
GGAAAATCAGGGATGCGTGTATCCTACATCTGTGGTGGTTTCTTCATGAT
AttaatttattcaattttttttatatgtttaaACTACACACgaaattacc
c
Run BLAST on NCBI

protein sequence of TCONS_00046242-protein

>TCONS_00046242-protein ID=TCONS_00046242-protein|Name=TCONS_00046242-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
MVHSITPEDDMKLFDKKQSAKRFAYNGMKSKKNSWDQFEEDGDSEKFVQQ
TKIMSPNHLSHLGMKHNQRTKDMIDLDNVWSIRNVSLKANQSDSISSSSL
VNKTDTYSRHKGLFSPLARRDSGQRSFLSQKQQQQSSQPQPQPPQPPTQR
LHLSSLSFQKKKPNGYF
Run BLAST on NCBI

transcript from alignment at scaffold_108:207021..219025+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046242 ID=TCONS_00046242|Name=TCONS_00046242|organism=Clytia hemisphaerica|type=transcript|length=12005bp|location=Sequence derived from alignment at scaffold_108:207021..219025+ (Clytia hemisphaerica)
CTTTCTCAAGTCACCTTCAACCAGACTATATACTGTGAGGTTTAATAATT
ATACTATGCTTCGCCCAGTTTACTAAAATACGATTCGACTTGATGGTAAT
AGTATTTTCTGGGTCAACCCGACTGTCTTATTTGTTGACAATTATAGGAG
ATTACCTAAAGACTGATACTTCGTACCGCGTAGAGCGGGTGAAAAACCGA
TTACGAAAGGCGATATAGTTTGCCCGCTTTACACGCCAAATTCCACTACT
TTCTCACCATTTTCTAATTCCAGGTCTGTGCTCTTACTTAGATCTTTGAC
GTATTCGAGTCAAACCACGCTGATATATTACAAGAAGAAATTTCATGAGC
CGTAGCTCGATCCGCTATCTAATGGAAGAACTTATGTCCCACACTGACTT
GAAAACTCAGAAAAATGTGAAACCACCAAAATACTGATCGTGATTTCCCA
GTGTTTTACCAGTTGAACACCCCTCCAGTTTCCAGTTGAAGGAGATGGTT
CACTCAATAACCCCTGAAGATGACATGAAGTTATTTGGTAAGTGTCGTTT
TTAGATCCATCTCCTTCATTTCAACTCAAAAAGTGCGTCTGTCAGTTGAA
AAAAACATCATAGGAAGAATGAATGGGCGGTTCCCAGTtatgtttacaat
tttctttttaaaaaattcaggATTTCCATAGCATAAGGATTCAAGAATTT
TTAAGTGCTGTAGCTAGTTTCGATACTAAGCAAGAAAATAGtgcaaattt
tatggattttctaaTTCGTATGAccaaataattaggaaaagCTTTTAGGA
AAGTCCTGCTTTTTCTGGAACCTTTGTTAAAATTTCTCAGCAGAgtttgg
gccattccagaatttgagTCTGTAACAGGCAGGCTTAGGAGGGGGGGGGG
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaggaaagagtaaacgcaag
acagaaggtttggttgtgttgatcaggtatgtttttattctatccgaact
aatgttaaaaaagaccaaagaggtcctgactgtgtctggtcattaaaata
caaagttaaatcaaaacaaaaatggtagagtagatctGCGAGcaaagctg
cgtagttcattagttcatttgttttgaaatttttctgctttgaTATTggc
cagtatggattccacgaaatctcgcgccgaagatatttttccgtgcagca
agcctcacgccaagcaaaatttcttttgtaccaacattcaatttttcaat
aagggtgcaagatgggaaaagaggcgcatgcgccaacataattaataaat
tgacgcgagcgcaagcgagcgaaagcaaatttagccaaacggaagctaaa
aatctaaaaatcgatggattatggagtcattcacgccgagctggaattat
tactttacgccaactgaaaatcaaacaatctttgtaagtacccttacgcc
aatgcgccaaaaacgtttcagttgtacgctGAAGAACTTCggcgttagtt
acacgaaatccatactgggatattggtcagtcatttgatggctatgcaaa
tTTCCCTCCCCACTGATGCAATTTaccgacttcacggtatttCTGTTGAG
GGCACAAAAGTTTtcgacaaaatttgaaatttccaaggcaagaGAAGAAA
ATTTGTGAAATTCCAAGGcagttgaattaaaaaaggcaaaaaagagtgga
atttctgaTGCATTTGGCAAAAGTATATACATGGATTTTCATctgaattt
ccgaccaccaccaCTGGCAACTAGTCActctagcgtcccgccaaaatgcc
tATCAGAGATTATTGCTGCGAAAGCGCTTTATCGTTtgcttgactctcaa
gcaaaaaaatgcggcaaaaaacttctaaagggattcatgcaAAAATACGG
GTTATTTatggctttttaatgaaattaacattttcaaaaactttgagaaa
ttgcctaaaatttgagccatagatgaaaaaatttgagcNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAtgcggaattatttt
ttctttagcgtataaaccaggccttaaaaatcgaagcgctgtctcgggaa
ttgaatgacaaattttggtaggttgattttggctgctgcacgatttattt
tgtttcaaactttcaagttttaattaattgtcttgcgaactcgattcagg
taactctcatccttgttgtgcaaatacatcctgtagatgactgatgttgt
tttttctgaaagctagatttcctagtgtgactaactgactggaaaagaaa
aattatttctgaaactagaaaaaattagaaaatgcacgtcgtccaaCGGG
GTAACAAAGATTTTCTGGGATGGCCCTTTCCAAGTGTAAAATAATCCAAA
AAACAGTAGTGTCGTGCGTGGTCCACAGGGGGGTAAtggtttttggtaat
ttttttggAGCTACACAATGGATTTTCAAACTATGAGTCGGGCAAAAATC
TAAACAAATTTATCTGAGCTGTGATAGTATGTTCTTTCtacatgatatta
taccatgctgaaatttttttgccaaaaaaagatcgcttttaaaagttaaa
aatctgaaaacccactttccctaacccctcgcaggcaaaaacacgttcgt
ttacctcccaaacaattttatacacaacagtGTATAATTTTTACAAAGTA
TATTATTTTTGGATTTATGAGAAAACAAATGTTAATGTAAAGATATATCA
TTCAGCGGTGTTATTAGACCCTTTTCAGGGAACTGGACCCCCATTTTTCA
TGTCAGAATTCATTGCNCAGAGGTGTTATTAGACCCTTTTCAGGGAACTG
GACCCACATTTTTCATGTCAGAATTCATTGTCAGTAATGCTACAGCGTGG
TTTGAAACTTTGCTGGTGCTTTGCTGGTCAGAAAGTGGATTTATTTGTGA
ATGTATAAACATTACTACAGCTAgaatgttttctttgtttttttttattt
cactgcATTTTTGTCTTATTCTGTTTTAGTAACCAATTGAAAACTCTTGA
TCGTTTCTTTGTGTCAGTGTTCACTTGGCTGTCTTTTTTTGGATGTTTGT
ACTTAGCAATTTTTTTGCCTCTACGAATTTGANaaaattcaaaaattttt
tttttttttttttttttttataaatagaaatttGTAGTTTGCCCACGGAC
GTGGAGTGGTTCAATTtgagtaaataaataaataaataacgaTATTGCAT
TTTTGTCACCCCAAAAACCTTTAAGATTTcaggaatgacaaaagagcaGA
AATTCTTCTAATCGGCTACGNTGCCTCTACGAATTTGACGAATTTTTCCT
GAGCGTCTGTTACCCGTGGCTGGGACCGCCACTTATGGCTTTCTTTGATA
GACTGGGTGGCATTACTGCCTGATAAAAAAACAAAGTGGCCCAGTGTATA
CATATGGAAtaaatttttggttttgcttGGGTAGCTTGCTAATCCATACA
ACTTTTTACAACAATTTTGAGAAACATTTAtagtttcaaaaactttggat
ttttggaatttatagtttcataaacttCAGAGTTTTggaatatatatttt
atattctattgttttggtgtttttatgtaggttttaaaaacaaaagtgaa
acATTCCAAAGATGACAACAAAATCCTCTCTAGTCTTGTCTCTACTAGTC
TTCACTGGATGAGCTACTTCACAAAATTTGCTTTAATTTGAGCAAATATT
TTAACTTGAGTAAATATTTAtgtttaataataataaaaattccaagcaaa
aattttgtttaaatctGCTCAATCAAGTAATTGCTCTATGAAAAGGTTTT
ATGGATTGGCAATGTTAAAGAAAAATGCTAAAAAGATGAAGTCTTCTTAA
AATGATCTCTGGTATATGCTAATTGCTATATTTAACTCTAAGAAGTTTTT
gaacctacctcggaggtcctttaatttaacCTTTAGACGTGCTGCTCTTG
CTTCATTAGTtaaagggcaaggttctctaaaaagtggatGAAACcgtttt
ttccagaaaaattttttttggctgtagaagtttgattttcttatttgggg
aaattcccttttgtcatttttagggaaaattagCATTTCTTGTAATTGAC
TTAgtattttttcctgttttttgcACAATGGTGTAAAATGGGAATGCTTG
AAATCTgagggagcccgattttcgaaaagaattggcaaatttggataaaa
aagtgcctaaaaatgggattttttggACGTGTGAAATTCCTTCTTTAGTT
GTTCCTGATTTTTTACATAGTGATGCGAAATTATAATCCTTAAAATGTAA
gacttcaagatttttaaaagaaaaagtttgggcaaaattttctatttgct
AAACTTGCTTCGtagattttatctttaaagaGCAAGAGTTATCTGTACAT
GAAAGAAaggattgtttttgtttgtgcCCAAAATTTAGCTCCTTACCTCT
AAAACATCGTGAAGCCAGTGTAAAACAAGCTTCATCATGTTTTTCAAGCT
TACATACCACTATGCTATGCTGTTATCTTCTCTTTTTTGTTcgaacattt
tcatcttcatttagCATGTTTCTGAATATCTATTTCAGGTAGGTATCtat
attcagcatgttgcttgtttttgttaattACAAATATTGGTGAATAAATT
GGTGATCGTCGATTGCTCCTGGTCTACTGCACTAgactcggggggggggg
ggaccaagtcagtgtactggACCATAGGGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTAATTCAATGGGGGTACCAAATCCTGGGGGCTACCTAAGA
ATCCAAACAactttgggggtacctaaatcgTTGGGGGTACCTAATTTTAT
TGGGGGTACCTGAATCCTGGAGGACCCTATGAAGAAGTTTTTgaacctac
ctcggaggtcctttaatttaacCTTTAGACGTGCTGCTCTTGCTTCATTA
GTTAaaaggcaaggttctctaaaaagtggataaaaccgttttttccagaa
aaaattagCATTTCTTGCAATTGCAATTgcaacttgggtctgcattgaga
gTTTGCTgatgttggaaatgttcatgacgttcaaataagatggacaaact
gttggcaaaatataagagaaaaaggaacaaaaaaacaatgaaattgtatt
tttgtcattttgtcttatttttagcgtgattgatgtttttaatgattctt
tgaaatttcgaaatggaaaaaagtcagttttttggaaataactttcgaac
tactttttcaaatttaatgtatgatagctcaaaattcaagttagagcatc
ctctaaacaataaaaaaagaacaaacaaaaaatttaaatcctgaagctca
caatatctcgacaaacctgtatactttttttttggtgtACCCGGGTATGT
AATTTTAATATTTCATTACCTTGCCCATGTTTGTATGATTGGTAAAAAAG
CTCATTTTAGAGAAATCAAATAGCTGTattttattggacctaccttggag
gtcttTATTAACCCATGTCTGTCTGTTTGTTCTTTCATTTGTTCATCTGT
TACCACAGCTTTCCTTTGGATTAGGTCATTAGTTTTTTTGGCACAAcaat
gcaaaatgacaatgcctaaaatgcgacggagcccaatttttgaaaaaaaa
aacgtttttggTCCAAAAACCAGCCaaaaaccacccaaaaatagcgtttt
ttggactttgtgtgaagttggttcattagatttttctgattttttccagA
AAGATAGATATTACCGTGTTCTAAGAAATGGCGGAGAcaatttttcccag
aaaattctTATACGCCATGTGACTCTTTTGTGACCCTTTGACTCTTTTTC
AAGCTTGCTTCAAGTCAAAATAATGAGCTTCTAAAAGATTACTGCTGCAA
TGAGTTTTTCTTTGCTAAGATAGCAGATCAAACAAAGCACATTTCCAATT
CAAAATTGTGGACGACAGTATTGTTTTCCTATCACCTTTTTAACCACTCA
cgcatagtgtgcaagggggttccaggtcccacctgaaaattcaggtccca
ccttatccccagactcccagatcccagctaaaaacaaaaattcgaggaac
aaaacaaaatttctttaccgtaatatgaagatgcaatatattacatatgt
ttaactttccatttgcctatgacctACATTAGGGGTAGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAAGTTTGGCATGaaattatggctaatcctcgaat
aagaagttttggggaaaatttgtcccgataactacaatattagtataaat
aagtgaggatcgcctacaatcataactgcagggagggagggaggtaaaat
atttcatcctatcagctttcagttagagcgttgacttgaacagggagatg
tgatggccattttgaagatgacgtcacatggctattagcaaagtagactc
agatggcggagggcggccacccagccattcgaatactgtatatagcgctt
atcaaataaaagttaagccacaatttaacctgtgttaaatccaaaatata
ttatgtctattatatacatttatgaagtatataaaaaaaatgtatcataa
aatcataaaatctgaaaataagaaattttacttttaactttttccaaaac
acccaaagtcccaccaaagtcccacctaaagaaattaactcccaccttaa
cttgtttctcccacctaaaacctggaaaaccccaaatcccacctgaaaat
tttcgacccaaatCAGCAAACCCCTCCCCCCACTATTCtgggggggggtg
cacactatggaCTCAGTGATGAGAGATGTgctttttatttgatattttct
tcTCATTATGCTATTTTGATTCTGTGCTAGACATTATTATTGTTCTTTTC
TAGTTATTTTTTATCTGACTCTCATCATAAGGTAGGTCTGTTCAGCATGT
GGCTTGTTGGTTTTAGCTTCatcacttttcaaattttgttcctatttaaa
tttttaataGATAAGAAGCAAAGTGCAAAACGTTTTGCGTACAATGGAAT
GAAGAGCAAAAAGAATAGTTGGGATCAGTTTGAAGAAGATGGAGACAGTG
AGAAATTTGTTCAACAAACCAAAATAATGTCTCCTAATCACTTATCACAT
TTAGGGATGAAACACAATCAACGTACGAAAGGTTTGTCTAACAAAAAAAC
CCTGCAATTTTTAAATCCGTCCCTCCTTAGCTAAAGTTTTAGTCTCCAAT
ATGAATCTtattacagattttttttcgatttgatATTCAACCCTTTGATT
TTCGATTCTTCACAGCTAACTATTACTAAAATAATCCGTCCAAATAATCC
AAGCGTATCAGCATTTCTATCTTCCTTTATGGTACTTTATGGCACTTTAT
GGCTTATGACTTTTTTTACGAAATTTCGGACCCAATCCACTCCTCTATCT
TCTTTCTTTCCAAAGACATGATTGACTTGGACAATGTATGGAGCATACGA
AATGTTTCTTTAAAGGCCAACCAATCAGATTCCATATCGAGTAGCAGTCT
GGTCAACAAAACAGATACTTATTCACGACACAAAGGCTTATTTTCACCTC
TTGCAAGTTAGTGAAATAATATGCGATTATTTTTCCTTAATTATACTGAG
GTATCTTTCAGGGTCCTATCAAACAGTTGTGTTGATCTTTGCCAATACTA
TTTcagtttttatgtttttttgttgatatttaGTATAGAGCTTATATATC
TTCTATTGAACCAATTTTGTTCCATGTTTTGCTTGAActgtaaaattttt
gaaatttctcaaaaatttactaaaatCCAGACTAAATAGTAATAGTATCA
TACCATTAATAACATTATCGCTATACTTAAAACATCTTCTGGCAAGTTAT
CTTGTAGACAATTTCCAAACTATGTTACTTGGTTTGATTATTTCAGGGAG
AGATTCGGGTCAGCGTTCATTTTTATCACAAAAACAACAGCAGCAATCAA
GTCAACCACAACCACAACCGCCGCAACCACCAACACAACGCTTACACTTA
TCATCTCTTAGCTTTCAAAAGAAGAAGCCTAATGGatacttttgaaaatg
ttttttatttgaaaattaaattaatcaatttttttttgtaacataAATGT
ACATAATTAATTTAAATGAGGTTGgttttataaaacaaaattgTTGGATT
ACCGTTGTCTAGGATATAATTTTCTAGTCGACGGGAATCTCAGTGTACTC
TAAGAATTGCAGCTCAAGGGTGCAGAGATGTCGCAAATACAAAAAAGATG
ACAATAAGGGATGGCATACACGCCTTTccctttataagaatatactttag
aatatccatgatgaaactGGCCAACAAAAACATTACGAATATGCTACGAA
TACCATTTGGCaactgaagctaagaatgctGTTTTAAGAGCCTTTAGCCT
GTAATTTGCCAATTATTCCCCAGCAATGCTATAAGAAATATTACAAAAGT
GGCAAAAGTTACTTGACGTATACATTGTATGCTAGATATAGGCTGGGTTT
GGATCTTAatagaatatttcaggatgattttttccaaaaagttaagaata
tccacgatgaaatttggaaaaacaccattcttataaaaaaagtgtgcacc
aataagttttttttattggcCTTCACAGTCCCTTTCGGTACATTTCGTCC
GTGTAATGGTTTACCTCGATTCAGTCCCTTGGGTGTACATTACTTAGCct
ataaataaaaacataatGGTTATTCAGCTGTCCTGACTGTTTTTTTGAAG
TCGTTTGATTAGTAGTAAAAACGTGGTAAAGTGTAAAtgctttttattga
tttttttatgatttgagtAGGTATTTCAAAGATAGTGATATAATAGAGTG
GTTAtgcttttaatttattttttcacatattttttaaagatttctaaaac
atttttttagatttttagctGTAGATATAAGTTATACACTATAGTTTCGA
CTTTTAGTGTTTTTCGATTTgagttttttggaaaatatattaAACCTAAT
TTTTACTAATCTTTTAGagtaaagttttgattttgtatgaATTGCATAGT
TTTATGGGCACGTCTGGgggtaggctgcacgcatcccctctgatatgttt
tgatataaggGGTGCGTATCGTGTTTAAAATTTCCGTCGAGGAGTTGccc
ttattattattattataggaGTATATTTCGccggtctattgacctctatg
aaacaatctaatTGTCTGTGTGTTTTTGAAGGGTAATATTAGTTTGCCAT
TTTTGTTAAAACAAGCGCTCCATCGCAGATGATTAACTCGCAAGCATGCC
AATCCTTCTCGAAGCGCAATAAATTTAAACAGGTTACCCCAATTTTGGAa
taactctcggacgggaattttatataTGATGCGCACCCACTATATCGTAA
TCGAGGAAAATCAGGGATGCGTGTATCCTACATCTGTGGTGGTTTCTTCA
TGATAttaatttattcaattttttttatatgtttaaACTACACACgaaat
taccc

Coding sequence (CDS) from alignment at scaffold_108:207021..219025+

>TCONS_00046242 ID=TCONS_00046242|Name=TCONS_00046242|organism=Clytia hemisphaerica|type=CDS|length=2016bp|location=Sequence derived from alignment at scaffold_108:207021..219025+ (Clytia hemisphaerica)
ATGGTTCACTCAATAACCCCTGAAGATGACATGAAGTTATTTGATAAGAA
GCAAAGTGCAAAACGTTTTGCGTACAATGGAATGAAGAGCAAAAAGAATA
GTTGGGATCAGTTTGAAGAAGATGGAGACAGTGAGAAATTTGTTCAACAA
ACCAAAATAATGTCTCCTAATCACTTATCACATTTAGGGATGAAACACAA
TCAACGTACGAAAGACATGATTGACTTGGACAATGTATGGAGCATACGAA
ATGTTTCTTTAAAGGCCAACCAATCAGATTCCATATCGAGTAGCAGTCTG
GTCAACAAAACAGATACTTATTCACGACACAAAGGCTTATTTTCACCTCT
TGCAAGGAGAGATTCGGGTCAGCGTTCATTTTTATCACAAAAACAACAGC
AGCAATCAAGTCAACCACAACCACAACCGCCGCAACCACCAACACAACGC
TTACACTTATCATCTCTTAGCTTTCAAAAGAAGAAGCCTAATGGatactt
ttgaATGGTTCACTCAATAACCCCTGAAGATGACATGAAGTTATTTGATA
AGAAGCAAAGTGCAAAACGTTTTGCGTACAATGGAATGAAGAGCAAAAAG
AATAGTTGGGATCAGTTTGAAGAAGATGGAGACAGTGAGAAATTTGTTCA
ACAAACCAAAATAATGTCTCCTAATCACTTATCACATTTAGGGATGAAAC
ACAATCAACGTACGAAAGACATGATTGACTTGGACAATGTATGGAGCATA
CGAAATGTTTCTTTAAAGGCCAACCAATCAGATTCCATATCGAGTAGCAG
TCTGGTCAACAAAACAGATACTTATTCACGACACAAAGGCTTATTTTCAC
CTCTTGCAAGGAGAGATTCGGGTCAGCGTTCATTTTTATCACAAAAACAA
CAGCAGCAATCAAGTCAACCACAACCACAACCGCCGCAACCACCAACACA
ACGCTTACACTTATCATCTCTTAGCTTTCAAAAGAAGAAGCCTAATGGat
acttttgaATGGTTCACTCAATAACCCCTGAAGATGACATGAAGTTATTT
GATAAGAAGCAAAGTGCAAAACGTTTTGCGTACAATGGAATGAAGAGCAA
AAAGAATAGTTGGGATCAGTTTGAAGAAGATGGAGACAGTGAGAAATTTG
TTCAACAAACCAAAATAATGTCTCCTAATCACTTATCACATTTAGGGATG
AAACACAATCAACGTACGAAAGACATGATTGACTTGGACAATGTATGGAG
CATACGAAATGTTTCTTTAAAGGCCAACCAATCAGATTCCATATCGAGTA
GCAGTCTGGTCAACAAAACAGATACTTATTCACGACACAAAGGCTTATTT
TCACCTCTTGCAAGGAGAGATTCGGGTCAGCGTTCATTTTTATCACAAAA
ACAACAGCAGCAATCAAGTCAACCACAACCACAACCGCCGCAACCACCAA
CACAACGCTTACACTTATCATCTCTTAGCTTTCAAAAGAAGAAGCCTAAT
GGatacttttgaATGGTTCACTCAATAACCCCTGAAGATGACATGAAGTT
ATTTGATAAGAAGCAAAGTGCAAAACGTTTTGCGTACAATGGAATGAAGA
GCAAAAAGAATAGTTGGGATCAGTTTGAAGAAGATGGAGACAGTGAGAAA
TTTGTTCAACAAACCAAAATAATGTCTCCTAATCACTTATCACATTTAGG
GATGAAACACAATCAACGTACGAAAGACATGATTGACTTGGACAATGTAT
GGAGCATACGAAATGTTTCTTTAAAGGCCAACCAATCAGATTCCATATCG
AGTAGCAGTCTGGTCAACAAAACAGATACTTATTCACGACACAAAGGCTT
ATTTTCACCTCTTGCAAGGAGAGATTCGGGTCAGCGTTCATTTTTATCAC
AAAAACAACAGCAGCAATCAAGTCAACCACAACCACAACCGCCGCAACCA
CCAACACAACGCTTACACTTATCATCTCTTAGCTTTCAAAAGAAGAAGCC
TAATGGatacttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029536XLOC_029536Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046242-exon-scaffold_108-1491911889:207021..207054TCONS_00046242-exon-scaffold_108-1491911889:207021..207054Clytia hemisphaericaexon
TCONS_00046242-exon-scaffold_108-1510915933:207021..207054TCONS_00046242-exon-scaffold_108-1510915933:207021..207054Clytia hemisphaericaexon
TCONS_00046242-exon-scaffold_108-1575043694:207021..207054TCONS_00046242-exon-scaffold_108-1575043694:207021..207054Clytia hemisphaericaexon
TCONS_00046242-exon-scaffold_108-1491911889:207312..207557TCONS_00046242-exon-scaffold_108-1491911889:207312..207557Clytia hemisphaericaexon
TCONS_00046242-exon-scaffold_108-1510915933:207312..207557TCONS_00046242-exon-scaffold_108-1510915933:207312..207557Clytia hemisphaericaexon
TCONS_00046242-exon-scaffold_108-1575043694:207312..207557TCONS_00046242-exon-scaffold_108-1575043694:207312..207557Clytia hemisphaericaexon
TCONS_00046242-exon-scaffold_108-1491911889:216481..216651TCONS_00046242-exon-scaffold_108-1491911889:216481..216651Clytia hemisphaericaexon
TCONS_00046242-exon-scaffold_108-1510915933:216481..216651TCONS_00046242-exon-scaffold_108-1510915933:216481..216651Clytia hemisphaericaexon
TCONS_00046242-exon-scaffold_108-1575043694:216481..216651TCONS_00046242-exon-scaffold_108-1575043694:216481..216651Clytia hemisphaericaexon
TCONS_00046242-exon-scaffold_108-1491911889:216936..217076TCONS_00046242-exon-scaffold_108-1491911889:216936..217076Clytia hemisphaericaexon
TCONS_00046242-exon-scaffold_108-1510915933:216936..217076TCONS_00046242-exon-scaffold_108-1510915933:216936..217076Clytia hemisphaericaexon
TCONS_00046242-exon-scaffold_108-1575043694:216936..217076TCONS_00046242-exon-scaffold_108-1575043694:216936..217076Clytia hemisphaericaexon
TCONS_00046242-exon-scaffold_108-1491911889:217417..219025TCONS_00046242-exon-scaffold_108-1491911889:217417..219025Clytia hemisphaericaexon
TCONS_00046242-exon-scaffold_108-1510915933:217417..219025TCONS_00046242-exon-scaffold_108-1510915933:217417..219025Clytia hemisphaericaexon
TCONS_00046242-exon-scaffold_108-1575043694:217417..219025TCONS_00046242-exon-scaffold_108-1575043694:217417..219025Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046242-proteinTCONS_00046242-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_108supercontigscaffold_108:207021..219025 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.78781	2.32727	2.41986	3.05899	106.856	85.2479	53.4204	53.1198	37.2054	32.4212	28.7802	34.7511	4.48139	4.78513	5.64315	5.33967	5.85605	7.09857	5.25307	5.30949	6.28524	5.71987	8.22955	8.15021	9.47112	10.5979	20.3429	18.218	11.8646	13.2427
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046242 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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