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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046244 ID=TCONS_00046244|Name=TCONS_00046244|organism=Clytia hemisphaerica|type=transcript|length=4453bpRun BLAST on NCBI protein sequence of TCONS_00046244-protein >TCONS_00046244-protein ID=TCONS_00046244-protein|Name=TCONS_00046244-protein|organism=Clytia hemisphaerica|type=polypeptide|length=871bp MRFYLNPCFTRYSFDKNERKRMPKKDHNYNQSCNTSNGSTSTTTDEPSLDRun BLAST on NCBI transcript from alignment at scaffold_108:229651..269641+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046244 ID=TCONS_00046244|Name=TCONS_00046244|organism=Clytia hemisphaerica|type=transcript|length=39991bp|location=Sequence derived from alignment at scaffold_108:229651..269641+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_108:229651..269641+ >TCONS_00046244 ID=TCONS_00046244|Name=TCONS_00046244|organism=Clytia hemisphaerica|type=CDS|length=41856bp|location=Sequence derived from alignment at scaffold_108:229651..269641+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046244 vs. Swiss-Prot (Human)
Match: MMEL1 (Membrane metallo-endopeptidase-like 1 OS=Homo sapiens GN=MMEL1 PE=2 SV=2) HSP 1 Score: 449.514 bits (1155), Expect = 1.178e-138 Identity = 245/712 (34.41%), Postives = 394/712 (55.34%), Query Frame = 1
Query: 1021 NDVCMTEKCQSIAATLKKSMNLSADPCQDFHQFACGSWPLNYELPPSSPKLDTMAMLNNQKNQYLRDVIIRELKNTEQNGGSVNKDGFKSKLLEFYRSCMNLDVINKLGSNPLLEFIGKFGRWS-PLKQWIQGGVPEPDITDLLILSHQYFPPSVYDDRVKSPMFKTIVKVNDKNSKQHLLEVNIPDMPITNPENYLEKSERAKL------LMKKYALLQSNYVALLGPSSNAQEVLDELMQFEKDLAKIAINQSFLRIAQQTYDNMTLNKFMKEVG-NEINWVKLVEGFFSPLGIKVTGETQIGIRSIQYFRDLNAFLKRTKKQTIKDFIIWVCVW-RFGSYASGPYQEADFNFQRALFGIQERPQRWGKCIVDLEETMEMGLASLYVAKSLTTAGRNMATEMVKNITNAFRRNLVNVDWMDVSTKAKAFVKVDSIRDNIGYPDYVNNET--YLDIMYKNVEVNNGNYFRNALNVYQEKRRMNMRLLNEPVDKSAYDLPPTLVEAYFDPNKNKMVFLAGILNAPFYDTEGPMALNYGALGLVVGHEVTHAFDDLGRQFDGNGERKNWWTASSTKNFKDRSTCIVHQYGNYT---MYGQSINGKMTLGENIADNGGIKVAYMAYKDWERTHGKEKKLPGIPLTMDQLVFVSHGQVWCGAYREEYVKRALKTDYHSPAKYRTIGPLSNLKAFSDAFKCPLGTPMNPLKKCRVW 3114
++VC T C AA + ++M+ + +PC DF+QFACG W + +P ++ + +L ++ L+ V+ +N + ++ + K YRSCMN VI K GS PLL+ + G W + +W + E ++ L L + S ++ RV +F + +D+NS +H++ ++ P + + + E Y K+ M A L L S QE + ++++ E LAK + Q Y M L + + G NW ++ S + IK+ + ++ + I Y ++L + +TI+++++W V R GS S +++ N+++ALFG RW +C+ + ME + SLYV ++ ++M E++ + F L + WMD +K KA K SIR+ IG+PDY+ E LD Y N+ + YF N+L + + ++R L E VD + + + +V A++ PN+N++VF AGIL PF+ E P ALN+G +G+V+GHE+TH FDD GR FD NG +WW+ ST++F+++S C+++QYGNY+ Q++NG TLGENIADNGG++ AY AY W GK+++LPG+ LT +QL F+++ QVWCG+YR E+ +++KTD HSP KYR +G L NL AF+D F C GTPM+P ++CRVW
Sbjct: 86 SEVCTTPGCVIAAARILQNMDPTTEPCDDFYQFACGGWLRRHVIPETNSRYSIFDVLRDELEVILKAVL--------ENSTAKDRPAVE-KARTLYRSCMNQSVIEKRGSQPLLDILEVVGGWPVAMDRWNETVGLEWELERQLALMN-----SQFNRRVLIDLF---IWNDDQNSSRHIIYIDQPTLGMPSREYYFNGGSNRKVREAYLQFMVSVATLLREDANLPRDSCLVQEDMVQVLELETQLAKATVPQEERHDVIALYHRMGLEELQSQFGLKGFNWTLFIQTVLSSVKIKLLPDEEVVVYGIPYLQNLENIIDTYSARTIQNYLVWRLVLDRIGSL-SQRFKDTRVNYRKALFGTMVEEVRWRECVGYVNSNMENAVGSLYVREAFPGDSKSMVRELIDKVRTVFVETLDELGWMDEESKKKAQEKAMSIREQIGHPDYILEEMNRRLDEEYSNLNFSEDLYFENSLQNLKVGAQRSLRKLREKVDPNLWIIGAAVVNAFYSPNRNQIVFPAGILQPPFFSKEQPQALNFGGIGMVIGHEITHGFDDNGRNFDKNGNMMDWWSNFSTQHFREQSECMIYQYGNYSWDLADEQNVNGFNTLGENIADNGGVRQAYKAYLKWMAEGGKDQQLPGLDLTHEQLFFINYAQVWCGSYRPEFAIQSIKTDVHSPLKYRVLGSLQNLAAFADTFHCARGTPMHPKERCRVW 779 The following BLAST results are available for this feature:
BLAST of TCONS_00046244 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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