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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046249 ID=TCONS_00046249|Name=TCONS_00046249|organism=Clytia hemisphaerica|type=transcript|length=2711bpRun BLAST on NCBI protein sequence of TCONS_00046249-protein >TCONS_00046249-protein ID=TCONS_00046249-protein|Name=TCONS_00046249-protein|organism=Clytia hemisphaerica|type=polypeptide|length=711bp MFHDEDDEFSNLPVKPRGGGGVKVNVPVDDDFDALPVVRRGGGGGGGPVIRun BLAST on NCBI transcript from alignment at scaffold_108:317423..343049+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046249 ID=TCONS_00046249|Name=TCONS_00046249|organism=Clytia hemisphaerica|type=transcript|length=25627bp|location=Sequence derived from alignment at scaffold_108:317423..343049+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_108:317423..343049+ >TCONS_00046249 ID=TCONS_00046249|Name=TCONS_00046249|organism=Clytia hemisphaerica|type=CDS|length=29904bp|location=Sequence derived from alignment at scaffold_108:317423..343049+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00046249 vs. Swiss-Prot (Human)
Match: TACC3 (Transforming acidic coiled-coil-containing protein 3 OS=Homo sapiens GN=TACC3 PE=1 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 4.861e-31 Identity = 81/228 (35.53%), Postives = 133/228 (58.33%), Query Frame = 1
Query: 1519 TKELVEPLLYTQSDLDEVIKSREEEWQKKYLXXXXXXXXXXXMRELLEQDHRGKIDSLRKENNEMKQVVSQYEKTIVELTENSHHNHMYNEETLSESVRAKEQLQQDLSSAETNLVDAYKRIEKLKMAIDTYKSNEDNLKASVNEFQIKLRRSEERYQKLKSHAAEKVEAANVEINKVRKQKEIDLAGLQAALKKSQSRINSLEQEVQQKTRENAEFAQICDDLIKKV 2202
T +V+ L Y+Q DLD V+K+ +EE REL R + + L +N E+ +++ ++E+ + + E ++ + + ++ K+QL DL+S E + D +KR EK K I+ Y+ NE++LK V ++ ++ + +RYQ LK+HA EK++ AN EI +VR + + + LQA+L+K Q RI SLE+ V+QKT+EN E +ICDDLI K+
Sbjct: 630 TGPIVDLLQYSQKDLDAVVKATQEE-----------------NREL-----RSRCEELHGKNLELGKIMDRFEEVVYQAMEEVQKQKELSKAEIQKVLKEKDQLTTDLNSMEKSFSDLFKRFEKQKEVIEGYRKNEESLKKCVEDYLARITQEGQRYQALKAHAEEKLQLANEEIAQVRSKAQAEALALQASLRKEQMRIQSLEKTVEQKTKENEELTRICDDLISKM 835 The following BLAST results are available for this feature:
BLAST of TCONS_00046249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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