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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046255 ID=TCONS_00046255|Name=TCONS_00046255|organism=Clytia hemisphaerica|type=transcript|length=2611bp
GTCGGACCGTCCACCCCCCGTGCAGCAGGTGGTAAGTCTAAAGTGAGGCA
TTTCGCGAAGTTTCCAGCGAttgaaaaaagctggaaaagcagaTTCTCGT
GCATTTTCGCACGCTAATTACTTTTGCATGCGCATCATTACGTCATAATG
AGAAGCATGCGCTGTGAAAACGTTTTAAGTTTGAATTACAAACATCCTCG
CTGCATTCACTCATCAAACTAAGCGAACTGTGTATGTGTGTGTGAGaaag
aaattctttttaaaaaatgtctaaaaaatcaagtgaaaaatcaaaatcta
ctGATGGTGGAACTACTTCTGGAAATGAAACACTAACTGTTACTTACGAG
CAGTTGAGAACTCTGGTTACCGATGTTGTTGAAAAAGACTTTGGCCCACA
AATCATGAAAAGCACCAAAGACACAGTGAAAGCTGCTTCTGTGCATTCTG
CTGAGAATCAGTCGACCAATCTGGCTAAGCTCAAAAAGAAACTCGAAAGN
GCAACAATTAGGAacgaaagtttgaaacaaaaagccGAAGGTCTTCCCGT
TTTATTAGAATCAGCTTACGCCAAATCCACTTTGAGGAAGTACAAACCTG
CTTGGGAAAAATGGGTGTCTTGGGCTGGTCCATTCGACGAGGTAAACTGT
TGTCCTGCCGACCCTTTTTACGTAGCGGTATATCTAAACGATCTTACGAA
TTCACTTGCAACCGAAGGAACATTGACCGCAGCTATTCTAGGAATCAGAT
GGGGGCACTTAACCTCAGGATTTGAATCTCCGACCGATCATTCCCTTGTT
AAATTAGCACTAGAAGGAGGTAAGAGAATAATAgctgagaaaaattctat
tggAGGGAAAAGACGCAGAAAAGAACCCTTATCATCAGACATTATCAAAA
GTCTAGCGGAAACATACGCCACATCAAGTAATCTTTTGGATATTCGTTTT
ACTCTAATGGTTATATTAGGATTTGCAGGTTTTTTCAGAATCAGCGAAAT
GCTAAGGATTCAGACCAAAGATTCAACTTTCGATCAAACGGGCGCAACTA
TTTTTCTACCCATATCGAAAACCGATCAACAACGCCAAGGTAATCTCGTC
TTTCTCAGTAGAACAAAATCCAAATCCTGCCCAATCCACTGGCTCCGTAA
ATATTTATCACTTTCCGGGCTGAGATTCAAATCAGAAGCTTACTTATTTT
GTCGCCTTTACAAAACGAAATCTGGTCATAATGCACATGGTCATCTCCCC
ATATCGTACTCCACAGCCTTATCATNCCGGCCATCAAGATCAATTTGCTC
ATAACACAGCAGTCTTGGAAACGATTGAGGATACCCTCGAATTCATGGAA
GAGACGGATGTTGATGGGATGAAAGAAGCTTTAAATAAAGACAAACTTGG
TGACTACATTTGCAAGATTTATTACATCACGATCAACGTTACACGTGGTG
TGTTTTATGTGCCAATGCCCCTGTGCAAACACGTCTTTCGCGTCAATGTC
TCTGTACAAACGTATTTGAGGAGCNCGATGGTCCTCAAACACAAGTCGAA
ATATTTATATTAAAGACAAAACTGAAATCCGATTCAAAATTTCTCAATCA
TTGGGAATTTAGCTTTACTTTCATGTACaactcataattttttctttttt
atctctCGTGTTATTGCAGACAAATACCAAACAAAAAGTAGCTATTATTG
TGATTTATTGTTTGTTTATTCGAAAAGGAGAAATAGCCGAGAAGCGAAGT
TTCCAGCGAttgaaaaaagctggaaaagcagaTTCTCGTGCATTTTCGCA
CGCTAATTACTTTTGCATGCGCATCATTACGTCATAATGAGAAGCATGCG
CTGTGAAAACGTTTTAAATAAGGCGTTTGAATTACAAACATCCTCGCTGC
ATTCACTCATCAAACTAAGCGaacttaaacataaaaaaattattttcctt
tcaTGATCTTTCCACATTCCACCACGTACATTCGAACCTATTGCCACCGG
ACGAAAAGCCAGCAACTCAAATTGGTCAATCAATGGCTCAGACGATCAAC
CACCAAGGAATACGAAACGCCGGTCATTGGAGATTGACGATCTTATCAAC
ATTCACCACCGAAAACTTATCAAACATGGAATCGTGGATGTGTTTTATCA
AGTTGACGAATTTGGTATtccttaaacaaaaattacaaatagattgataa
cattttgaAGCTATGAAGCTCATACCTCGAAAAAATCcattataataatt
ataatttaaatttatgaTCTCTTACATTTGACGGTCAAACACTTGCAGAT
GGAATATTTTCGTTAGTAAAAAATTTGTACATAAAGGGAGGCAGACCTTT
AACCTCCGAAGGTCGAGGTGACGGATGCCATTGGTTAGGAGATAATGTTT
CCTCCAGAATAAACAGCCACTGGGGGTTTTACGCTACACGCTTCGTCACA
AAAATTCAGTTGTATTTTATTTGAGTTTATCCAACTTGTAATTTTACTAC
TGatttgttaaacattttttttaccacGAGTGTTATTGCAGACAAATACC
AAACAAAAAGTAGCTATTATTGTGATTTATTGTTTGTTTATTCGAAAAGG
AGAAATAGCCG Run BLAST on NCBI protein sequence of TCONS_00046255-protein >TCONS_00046255-protein ID=TCONS_00046255-protein|Name=TCONS_00046255-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
MSKKSSEKSKSTDGGTTSGNETLTVTYEQLRTLVTDVVEKDFGPQIMKST
KDTVKAASVHSAENQSTNLAKLKKKLEXATIRNESLKQKAEGLPVLLESA
YAKSTLRKYKPAWEKWVSWAGPFDEVNCCPADPFYVAVYLNDLTNSLATE
GTLTAAILGIRWGHLTSGFESPTDHSLVKLALEGGKRIIAEKNSIGGKRR
RKEPLSSDIIKSLAETYATSSNLLDIRFTLMVILGFAGFFRISEMLRIQT
KDSTFDQTGATIFLPISKTDQQRQGNLVFLSRTKSKSCPIHWLRKYLSLS
GLRFKSEAYLFCRLYKTKSGHNAHGHLPISYSTALSXRPSRSICS Run BLAST on NCBI transcript from alignment at scaffold_108:396962..399740+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046255 ID=TCONS_00046255|Name=TCONS_00046255|organism=Clytia hemisphaerica|type=transcript|length=2779bp|location=Sequence derived from alignment at scaffold_108:396962..399740+ (Clytia hemisphaerica)
GTCGGACCGTCCACCCCCCGTGCAGCAGGTGGTAAGTCTAAAGTGAGGCA
TTTCGCGAAGTTTCCAGCGAttgaaaaaagctggaaaagcagaTTCTCGT
GCATTTTCGCACGCTAATTACTTTTGCATGCGCATCATTACGTCATAATG
AGAAGCATGCGCTGTGAAAACGTTTTAAGTTTGAATTACAAACATCCTCG
CTGCATTCACTCATCAAACTAAGCGAACTGTGTATGTGTGTGTGAGaaag
aaattctttttaaaaaatgtctaaaaaatcaagtgaaaaatcaaaatcta
ctGATGGTGGAACTACTTCTGGAAATGAAACACTAACTGTTACTTACGAG
CAGTTGAGAACTCTGGTTACCGATGTTGTTGAAAAAGACTTTGGCCCACA
AATCATGAAAAGCACCAAAGACACAGTGAAAGCTGCTTCTGTGCATTCTG
CTGAGAATCAGTCGACCAATCTGGCTAAGCTCAAAAAGAAACTCGAAAGN
GCAACAATTAGGAacgaaagtttgaaacaaaaagccGAAGGTCTTCCCGT
TTTATTAGAATCAGCTTACGCCAAATCCACTTTGAGGAAGTACAAACCTG
CTTGGGAAAAATGGGTGTCTTGGGCTGGTCCATTCGACGAGGTAAACTGT
TGTCCTGCCGACCCTTTTTACGTAGCGGTATATCTAAACGATCTTACGAA
TTCACTTGCAACCGAAGGAACATTGACCGCAGCTATTCTAGGAATCAGAT
GGGGGCACTTAACCTCAGGATTTGAATCTCCGACCGATCATTCCCTTGTT
AAATTAGCACTAGAAGGAGGTAAGAGAATAATAgctgagaaaaattctat
tggAGGGAAAAGACGCAGAAAAGAACCCTTATCATCAGACATTATCAAAA
GTCTAGCGGAAACATACGCCACATCAAGTAATCTTTTGGATATTCGTTTT
ACTCTAATGGTTATATTAGGATTTGCAGGTTTTTTCAGAATCAGCGAAAT
GCTAAGGATTCAGACCAAAGATTCAACTTTCGATCAAACGGGCGCAACTA
TTTTTCTACCCATATCGAAAACCGATCAACAACGCCAAGGTAATCTCGTC
TTTCTCAGTAGAACAAAATCCAAATCCTGCCCAATCCACTGGCTCCGTAA
ATATTTATCACTTTCCGGGCTGAGATTCAAATCAGAAGCTTACTTATTTT
GTCGCCTTTACAAAACGAAATCTGGTCATAATGCACATGGTCATCTCCCC
ATATCGTACTCCACAGCCTTATCATNCCGGCCATCAAGATCAATTTGCTC
ATAACACAGCAGTCTTGGAAACGATTGAGGATACCCTCGAATTCATGGAA
GAGACGGATGTTGATGGGATGAAAGAAGCTTTAAATAAAGACAAACTTGG
TGACTACATTTGCAAGATTTATTACATCACGATCAACGTTACACGTGGTG
TGTTTTATGTGCCAATGCCCCTGTGCAAACACGTCTTTCGCGTCAATGTC
TCTGTACAAACGTATTTGAGGAGCNCGATGGTCCTCAAACACAAGTCGAA
ATATTTATATTAAAGACAAAACTGAAATCCGATTCAAAATTTCTCAATCA
TTGGGAATTTAGCTTTACTTTCATGTACaactcataattttttctttttt
atctctCGTGTTATTGCAGACAAATACCAAACAAAAAGTAGCTATTATTG
TGATTTATTGTTTGTTTATTCGAAAAGGAGAAATAGCCGAGAAGCGAAGT
TTCCAGCGAttgaaaaaagctggaaaagcagaTTCTCGTGCATTTTCGCA
CGCTAATTACTTTTGCATGCGCATCATTACGTCATAATGAGAAGCATGCG
CTGTGAAAACGTTTTAAATAAGGCGTTTGAATTACAAACATCCTCGCTGC
ATTCACTCATCAAACTAAGCGaacttaaacataaaaaaattattttcctt
tcaTGATCTTTCCACATTCCACCACGTACATTCGAACCTATTGCCACCGG
ACGAAAAGCCAGCAACTCAAATTGGTCAATCAATGGCTCAGACGATCAAC
CACCAAGGAATACGAAACGCCGGTCATTGGAGATTGACGATCTTATCAAC
ATTCACCACCGAAAACTTATCAAACATGGAATCGTGGATGTGTTTTATCA
AGTTGACGAATTTGGTATtccttaaacaaaaattacaaatagattgataa
cattttgaAGCTATGAAGCTCATACCNATAACAAACGCCGGTCATTGGAG
ATTGACGATCTTATCAACATTCACCACCGAAAACTTATCAAACATGGAAT
CGTGGATGTGTTTTATCAAGTTGACGAATTTGGTATtccttaaacaaaaa
ttacaaatagattgataacattttgaAGCTATGAAGCTCATACCTCGAAA
AAATCcattataataattataatttaaatttatgaTCTCTTACATTTGAC
GGTCAAACACTTGCAGATGGAATATTTTCGTTAGTAAAAAATTTGTACAT
AAAGGGAGGCAGACCTTTAACCTCCGAAGGTCGAGGTGACGGATGCCATT
GGTTAGGAGATAATGTTTCCTCCAGAATAAACAGCCACTGGGGGTTTTAC
GCTACACGCTTCGTCACAAAAATTCAGTTGTATTTTATTTGAGTTTATCC
AACTTGTAATTTTACTACTGatttgttaaacattttttttaccacGAGTG
TTATTGCAGACAAATACCAAACAAAAAGTAGCTATTATTGTGATTTATTG
TTTGTTTATTCGAAAAGGAGAAATAGCCG Coding sequence (CDS) from alignment at scaffold_108:396962..399740+ >TCONS_00046255 ID=TCONS_00046255|Name=TCONS_00046255|organism=Clytia hemisphaerica|type=CDS|length=1038bp|location=Sequence derived from alignment at scaffold_108:396962..399740+ (Clytia hemisphaerica)
atgtctaaaaaatcaagtgaaaaatcaaaatctactGATGGTGGAACTAC
TTCTGGAAATGAAACACTAACTGTTACTTACGAGCAGTTGAGAACTCTGG
TTACCGATGTTGTTGAAAAAGACTTTGGCCCACAAATCATGAAAAGCACC
AAAGACACAGTGAAAGCTGCTTCTGTGCATTCTGCTGAGAATCAGTCGAC
CAATCTGGCTAAGCTCAAAAAGAAACTCGAAAGNGCAACAATTAGGAacg
aaagtttgaaacaaaaagccGAAGGTCTTCCCGTTTTATTAGAATCAGCT
TACGCCAAATCCACTTTGAGGAAGTACAAACCTGCTTGGGAAAAATGGGT
GTCTTGGGCTGGTCCATTCGACGAGGTAAACTGTTGTCCTGCCGACCCTT
TTTACGTAGCGGTATATCTAAACGATCTTACGAATTCACTTGCAACCGAA
GGAACATTGACCGCAGCTATTCTAGGAATCAGATGGGGGCACTTAACCTC
AGGATTTGAATCTCCGACCGATCATTCCCTTGTTAAATTAGCACTAGAAG
GAGGTAAGAGAATAATAgctgagaaaaattctattggAGGGAAAAGACGC
AGAAAAGAACCCTTATCATCAGACATTATCAAAAGTCTAGCGGAAACATA
CGCCACATCAAGTAATCTTTTGGATATTCGTTTTACTCTAATGGTTATAT
TAGGATTTGCAGGTTTTTTCAGAATCAGCGAAATGCTAAGGATTCAGACC
AAAGATTCAACTTTCGATCAAACGGGCGCAACTATTTTTCTACCCATATC
GAAAACCGATCAACAACGCCAAGGTAATCTCGTCTTTCTCAGTAGAACAA
AATCCAAATCCTGCCCAATCCACTGGCTCCGTAAATATTTATCACTTTCC
GGGCTGAGATTCAAATCAGAAGCTTACTTATTTTGTCGCCTTTACAAAAC
GAAATCTGGTCATAATGCACATGGTCATCTCCCCATATCGTACTCCACAG
CCTTATCATNCCGGCCATCAAGATCAATTTGCTCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046255-exon-scaffold_108-1491911889:396962..399086 | TCONS_00046255-exon-scaffold_108-1491911889:396962..399086 | Clytia hemisphaerica | exon |
| TCONS_00046255-exon-scaffold_108-1510915933:396962..399086 | TCONS_00046255-exon-scaffold_108-1510915933:396962..399086 | Clytia hemisphaerica | exon |
| TCONS_00046255-exon-scaffold_108-1575043694:396962..399086 | TCONS_00046255-exon-scaffold_108-1575043694:396962..399086 | Clytia hemisphaerica | exon |
| TCONS_00046255-exon-scaffold_108-1491911889:399255..399740 | TCONS_00046255-exon-scaffold_108-1491911889:399255..399740 | Clytia hemisphaerica | exon |
| TCONS_00046255-exon-scaffold_108-1510915933:399255..399740 | TCONS_00046255-exon-scaffold_108-1510915933:399255..399740 | Clytia hemisphaerica | exon |
| TCONS_00046255-exon-scaffold_108-1575043694:399255..399740 | TCONS_00046255-exon-scaffold_108-1575043694:399255..399740 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_108 | supercontig | scaffold_108:396962..399740 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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