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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046257 ID=TCONS_00046257|Name=TCONS_00046257|organism=Clytia hemisphaerica|type=transcript|length=1353bp
CGAAACAACAGTAACAGTAACAGTGCAAGAACTACAGAGCTCTGCTCCCA
GCTCTCTACTTGCCGCTCTACTTTACCATTTTAATATCTCATATTTTCCA
CCGTGAATGGTTTATTGAATAACGCATTACCACTATTATCGAATCATCAA
TCAGACTAAAGAAAGCTCATGAAATTCAGATTTTCCGAAATAAATAGCCC
TCTTTTCAAGGCCTATCATTAAAAAGCCAGAAATTATAAAAATCGAATAA
ATGCTCGGAAGTACAGGAAActtgattttaaatatttttggaatGAGTTT
ATATAGTGACTAAAACTTGCAATacatattaataatttttttagacCAAC
AACCCTATTGAAGTCATTAAAGTTGATCAAACTGCAAGTAATGATAACCC
ACTGAAAATATTTCCTTATCTAATTGATGGAGAGGCACAAATATGGGGAG
ACTTCACTGTGATCTCGCATTTGGCTGAAAAAACGGGCAACAAGAACTCT
TTGTGTGGAGATACTTCTGAAGAAAAAAGCCAGATAAATTCCCTATTGTT
TTGGCTTGCTGGATCGTTTTCAAGATCAGCTTTGAGGGATTATGTTTTTC
CGAAAAAAGATGGCACAAACATATGCAAACTGGACTTGGATAGTGACAAT
GCTTTATTAATTGAACATGGCTTCAAATCAACTTCATCTCATCTAGATAA
CCTTGAGAAAAGTTATTTTAATGTTGACAATAAAAAGTCTTTGACATCAA
AACAATCTATTGCTGATTATTATCTTGCTTTGATATTTTTGGAGTTGGAg
aaaaatcaattcaagttGGATAATTGGAAAAACACAAATGCATGGTTCAA
GGGTTTTAAACCTGAAgtggaaaaacttttaaatcaaaTGGTGTAAACAC
TCCTCAGtaaaacaaatgtcaaaaatattttcaacctcAGATGTCAGATA
GTATTGCTATCAAAAATGGGTATCATTTTACAGAAATCTTTTCCAAAGTT
TTACACTAACAATGGTTATAgcattttcaatatattttgaccagttatga
tGCCTTTTTAAAAGGATAGTTTATAGGTTCATTTCTATTGATGTCTGATG
ACTtcttcgaaattttcaattttgcatttttctttttttaacagaATTTT
TAGTAtggttttttgtgtttttatgtcatttttttatcagcattttttGN
TCTTTTTTTAACAGAATTTTTAGTAtggttttttgtgtttttatctcact
tttttatcagcattttttgtaaataaggaTTGTgtaaagtgtaaaaaaca
gtGTGTTAAGATATCTAAATTATTTGGTAGAATTAATTTACAAAATACAG
AAG Run BLAST on NCBI transcript from alignment at scaffold_108:467540..469327+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046257 ID=TCONS_00046257|Name=TCONS_00046257|organism=Clytia hemisphaerica|type=transcript|length=1788bp|location=Sequence derived from alignment at scaffold_108:467540..469327+ (Clytia hemisphaerica)
CGAAACAACAGTAACAGTAACAGTGCAAGAACTACAGAGCTCTGCTCCCA
GCTCTCTACTTGCCGCTCTACTTTACCATTTTAATATCTCATATTTTCCA
CCGTGAATGGTTTATTGAATAACGCATTACCACTATTATCGAATCATCAA
TCAGACTAAAGAAAGCTCATGAAATTCAGATTTTCCGAAATAAATAGCCC
TCTTTTCAAGGCCTATCATTAAAAAGCCAGAAATTATAAAAATCGAATAA
ATGCTCGGAAGTACAGGAAActtgattttaaatatttttggaatGAGTTT
ATATAGTGACTAAAACTTGCAATacatattaataatttttttagacCAAC
AACCCTATTGAAGTCATTAAAGTTGATCAAACTGCAAGTAATGATAACCC
ACTGAAAATATTTCCTTATCTAATTGATGGAGAGGCACAAATATGGGGAG
AGTAAGATTAACTTTTATTATTACGTACATATCTATTTTAAATTGAATTA
ATTTACCAGATAAGTATTGTctttttttcacgtttttaaATTTGCTAGCT
AAAATCTTCACATACCATTCGCTTCCAGTaaccaaatttttaaaatttta
ctaaAACTCCCTCATGAAATTCTTACAAGTGATGCAAAATGGATATAAGG
TGAGCACAACAAAGTCTGATCCATTTCAATTCCAAGTACCATTACctatt
tttattgaattttcagCTTCACTGTGATCTCGCATTTGGCTGAAAAAACG
GGCAACAAGAACTCTTTGTGTGGAGATACTTCTGAAGAAAAAAGCCAGAT
AAATTCCCTATTGTTTTGGCTTGCTGGATCGTTTTCAAGGTATACCCACT
AATGATACTTTTACAAATATATTTCAAGTAGTGATATTTTTTGATACTCT
GAAAGATTACAACAGGTTAAACCTCTAGCGTACTTCATAAAATTCAATTC
ATGTTTGCAAATATTCAAGGGGTGGTAACTTTAAAAGTGATGTAAACTGT
TTTCTATAGATCAGCTTTGAGGGATTATGTTTTTCCGAAAAAAGATGGCA
CAAACATATGCAAACTGGACTTGGATAGTGACAATGCTTTATTAATTGAA
CATGGCTTCAAATCAACTTCATCTCATCTAGATAACCTTGAGAAAAGTTA
TTTTAATGTTGACAATAAAAAGTCTTTGACATCAAAACAATCTATTGCTG
ATTATTATCTTGCTTTGATATTTTTGGAGTTGGAgaaaaatcaattcaag
ttGGATAATTGGAAAAACACAAATGCATGGTTCAAGGGTTTTAAACCTGA
AgtggaaaaacttttaaatcaaaTGGTGTAAACACTCCTCAGtaaaacaa
atgtcaaaaatattttcaacctcAGATGTCAGATAGTATTGCTATCAAAA
ATGGGTATCATTTTACAGAAATCTTTTCCAAAGTTTTACACTAACAATGG
TTATAgcattttcaatatattttgaccagttatgatGCCTTTTTAAAAGG
ATAGTTTATAGGTTCATTTCTATTGATGTCTGATGACTtcttcgaaattt
tcaattttgcatttttctttttttaacagaATTTTTAGTAtggttttttg
tgtttttatgtcatttttttatcagcattttttGNTCTTTTTTTAACAGA
ATTTTTAGTAtggttttttgtgtttttatctcacttttttatcagcattt
tttgtaaataaggaTTGTgtaaagtgtaaaaaacagtGTGTTAAGATATC
TAAATTATTTGGTAGAATTAATTTACAAAATACAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046257-exon-scaffold_108-1491911889:467540..467990 | TCONS_00046257-exon-scaffold_108-1491911889:467540..467990 | Clytia hemisphaerica | exon |
| TCONS_00046257-exon-scaffold_108-1510915933:467540..467990 | TCONS_00046257-exon-scaffold_108-1510915933:467540..467990 | Clytia hemisphaerica | exon |
| TCONS_00046257-exon-scaffold_108-1575043694:467540..467990 | TCONS_00046257-exon-scaffold_108-1575043694:467540..467990 | Clytia hemisphaerica | exon |
| TCONS_00046257-exon-scaffold_108-1491911889:468256..468378 | TCONS_00046257-exon-scaffold_108-1491911889:468256..468378 | Clytia hemisphaerica | exon |
| TCONS_00046257-exon-scaffold_108-1510915933:468256..468378 | TCONS_00046257-exon-scaffold_108-1510915933:468256..468378 | Clytia hemisphaerica | exon |
| TCONS_00046257-exon-scaffold_108-1575043694:468256..468378 | TCONS_00046257-exon-scaffold_108-1575043694:468256..468378 | Clytia hemisphaerica | exon |
| TCONS_00046257-exon-scaffold_108-1491911889:468549..469327 | TCONS_00046257-exon-scaffold_108-1491911889:468549..469327 | Clytia hemisphaerica | exon |
| TCONS_00046257-exon-scaffold_108-1510915933:468549..469327 | TCONS_00046257-exon-scaffold_108-1510915933:468549..469327 | Clytia hemisphaerica | exon |
| TCONS_00046257-exon-scaffold_108-1575043694:468549..469327 | TCONS_00046257-exon-scaffold_108-1575043694:468549..469327 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_108 | supercontig | scaffold_108:467540..469327 + |
Blast
The following BLAST results are available for this feature:
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