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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046258 ID=TCONS_00046258|Name=TCONS_00046258|organism=Clytia hemisphaerica|type=transcript|length=932bp tgtcagtgaaaacaaaataagaatTGAATATGCAATAAAATGTCATCTAC TTTTGGAACCAAATCCATTGGTGAAAAAGACTGGAAAGCACATGGCCACA ATGTTGCAACAAACTCTAACACTGTGGCAACAAAATCAAGGCCACCTGGA CCTGATTGGACATCAAGTTTGAGGTGTATCAAACAAGACAATGTGATTTA TCCAAATGATGAACCTGTTCTTCGACAGGGGATGAGACCATTCCTTCATA AGAATGAACAAAGTCTGGAAGAATGGGCTTATTACAGAGACGGATCAAGA AGTGGCAAACGTTGTATCATCAATGGTAAACGCCAAGGGAACGTCCAATC GATCAATGAGATAAGCGTCGAAAGCACCATTGGGAATAGATCAAAAGTTC CTGACCCTCGTGGCGGAGTCGATAGCCTTACAGCAGGAGACAAAAGTTAT GCAGTGCCTGAATTTTCGAAAGGATTCCATAAAGAAGGTTCAACGCTACC CGCTGTTAATTTCAGCCGGTCCAATAAAATCGTGACAGATACTTTCATTC CTCTGCAACCACTTCCACAACATAAAAGcaTATCTTACAAGGAGAAAGAG GTGGTCCGTAAAAAGAATCATGAAGTTTTGGAAGTGGAAGGGCTTGACAA ATGGGATCCAGCGCCGGCTTTAACACCCGGAGTTTTCAAACATTGAATTT AGATTTAACCTTAGGGCTCAATATACTGATGTATTTGTATGGTATTTTTA GATTGTAAATAAGTGTGTAAAATTGTGAATAGCAAAGTCTCAAAACCTTA TCTTTATCTCTTGTAACCAAGAGTCGTTAATAACCctatgtatttatttt ttatagaaactaaattgtaaatttgatcatattattatattttattctAT TTATCCTAAATTTACATCTGGATACTTTCGTC Run BLAST on NCBI protein sequence of TCONS_00046258-protein >TCONS_00046258-protein ID=TCONS_00046258-protein|Name=TCONS_00046258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
MSSTFGTKSIGEKDWKAHGHNVATNSNTVATKSRPPGPDWTSSLRCIKQD NVIYPNDEPVLRQGMRPFLHKNEQSLEEWAYYRDGSRSGKRCIINGKRQG NVQSINEISVESTIGNRSKVPDPRGGVDSLTAGDKSYAVPEFSKGFHKEG STLPAVNFSRSNKIVTDTFIPLQPLPQHKSISYKEKEVVRKKNHEVLEVE GLDKWDPAPALTPGVFKH Run BLAST on NCBI transcript from alignment at scaffold_108:469702..472808+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046258 ID=TCONS_00046258|Name=TCONS_00046258|organism=Clytia hemisphaerica|type=transcript|length=3107bp|location=Sequence derived from alignment at scaffold_108:469702..472808+ (Clytia hemisphaerica) tgtcagtgaaaacaaaataagaatTGAATATGCAATAAAATGTCATCTAC
TTTTGGAACCAAATCCATTGGTGAAAAAGACTGGAAAGCACATGGCCACA
ATGTTGCAACAAACTCTAACACTGTGGCAACAAAATCAAGGTGCTCATTG
tcattatttcttttttttgaagtCTCAATTACTCTGAACAACCAATCTTC
TTGAAGAACTGGAGTTGAAGAACTAGAGAATTTTAAAAAGGTCCTATACT
GGTGTCACTTTTTTACATAGCTACCAACTACCCCAAGGGAACTTGCACga
ttttaattaaattaaattttaatttaattttagtaagagCTTTTTTAGCT
AGTAATGTAAAGTAATAATGTTGTAAGCTAGTTATTATGTAAATTTTGGG
AAGAACTATTTTTGGTGTGGTATcatctttaattttaaatttgtgCAAAT
ATAGTTTGGGTCCAAATTAGTTTCCTTAATAAGGTAGAAGTGGGTCAAAA
TGGGAATTACAAAACGCAATAACTATTTTTCACACTAAAAATAAGAAGTG
AGCTATTCAAACaaatacaaaatatatttcaaacagtaaaaattttgaat
ttctcatTTTCCTTCAGGCCACCTGGACCTGATTGGACATCAAGTTTGAG
GTGTATCAAACAAGACAATGTGATTTATCCAAATGATGAACCTGTTCTTC
GACAGGGGATGAGACCATTCCTTCGTGAGTATCCCAAATACTTTCttctt
tgtttcatttgttcttAATCCCTgtcatttctttctttaaagtttTTCTT
ACTATTCCTCATCTTATTTGTGTTCATTCACAAAAAATCAGGcataaaac
ttttcaatttcaaaattagcAGATGTTaaagttgaaatattttatgaccC
TGTCACTTAAAATGGGCCCTTAAGTTACACTTTCAACACAtcagaatttt
tcagttaactAACCACCGTGGGAAACCATCCATCATCATAGCTAATAAAA
CTGAACTTGATGAATTTGCCAAGGGCCATTGACCTTATAGTATTTCTTCA
ATCATTGTATTAGATAAGAATGAACAAAGTCTGGAAGAATGGGCTTATTA
CAGAGACGGATCAAGAAGTGGCAAACGTTGTATCATCAATGGTAAACGCC
AAGGGAACGTCCAATCGATCAATGAGATAAGCGTCGAAAGCACCATTGGG
AATAGATCAAAAGGTACATTTTGATTAGATAGTGTGTTTAGGGGTTTCTG
CCCCTAACTTCcttccttttcaaaaaatgcttcGACCCCTAAATAATGTT
TTGGTGCCTTCTTAAACCTTTAATCTAGCATAAATTATTCCCTAACTAAC
CATTGAAATGGACTTATCAAATCTTAAAACGGTTGAAAGTGCATGCATTT
TTCATAATCAAAAGAACACAAAAACACGACAAAATCGAAGGATTTTAATC
ACagtaattaaaattttcatatgaTTTACAAATCCATCAAGGTacgaatt
attattattttatgaTAGTTGTTCTTAATTTCTTCCTTTTCGTATTCGGT
AATCTAGTTCCTGACCCTCGTGGCGGAGTCGATAGCCTTACAGCAGGAGA
CAAAAGTTATGCAGTGCCTGAATTTTCGAAAGGATTCCATAAAGAAGGTT
CAACGCTACCCGCTGTTAATTTCAGGTAGAGTCCGGTCAATTCACTTAAT
TTTTATAttcagttgatttttttttagtttcttcgTCGTACTTGAAGCTC
GTGCCCTCCTTATCTGGCACtcaatgtagaaattttctGAAGGTTGGGGT
GATTTTCagcatctggaaggtttagattacggattTCGCCTGACCGTATC
GAAGGATTTTGCAGCGAGAGGCCTGAATCTCAGCTCTTGTTTTAGGgaat
tggcgggtccaaccaaaatattttcacaagGAATCCACAAGGGCCGTTGA
GCTTGACTGGGACGtagcacatcaaaggccgactatcattcctctccgat
gggaattTTTCCCGCCCCTTTAGACCTTTAGACTAGGCAGCCGCCAACCC
GCCTTCAGAATTATCAGATAAGTATATTCGGCGCCCATTAACCTTTTcta
gccaatgaaaaaaatgaactttatCAAAATGATTATCTTACAAAACTATT
GCTAACGCCGCATGATTGTTTAAGGACCTGGAGACAGGTTccgtttcatt
ttcttctttttcattttttcacagCCGGTCCAATAAAATCGTGACAGATA
CTTTCATTCCTCTGCAACCACTTCCACAACATAAAAGGTTTGGAAACTCT
CGTTTTGTTACGTTAGCACGTTCTCTGCCGAGCCTTTTTCAGAAATCGAA
ATTTCGACATCTTAGAATTTTatcgaaagtttgactttcagaggCTCCTG
TGGCCTGAGTGATCTTCaaatatataccaatcgacgcagatttttacaaa
aatgcaataaaaaaaacaagcaataGGTTCTATATCAAAAGGTtctatat
caaaagttatggctctTTAACGTACTACCGGTATTTTGACCCATCTACCA
CGAGAATACTCGTAGCTTGTAGCGAACGTGTTAAATCTTTTAGAGTTAGA
TCTTTTTTATTTAGTTACGTACCTTCCACCTGCTTCCACcattataaaag
aaaatattcGATTTGCATCAGCTATCTTCTCTgcaaattcgaacgtttta
ttCAAGTTTTAGTCAGTGGTTATAACTTTTGTAtgcatttttttcattca
aagcaTATCTTACAAGGAGAAAGAGGTGGTCCGTAAAAAGAATCATGAAG
TTTTGGAAGTGGAAGGGCTTGACAAATGGGATCCAGCGCCGGCTTTAACA
CCCGGAGTTTTCAAACATTGAATTTAGATTTAACCTTAGGGCTCAATATA
CTGATGTATTTGTATGGTATTTTTAGATTGTAAATAAGTGTGTAAAATTG
TGAATAGCAAAGTCTCAAAACCTTATCTTTATCTCTTGTAACCAAGAGTC
GTTAATAACCctatgtatttattttttatagaaactaaattgtaaatttg
atcatattattatattttattctATTTATCCTAAATTTACATCTGGATAC
TTTCGTC Coding sequence (CDS) from alignment at scaffold_108:469702..472808+ >TCONS_00046258 ID=TCONS_00046258|Name=TCONS_00046258|organism=Clytia hemisphaerica|type=CDS|length=3942bp|location=Sequence derived from alignment at scaffold_108:469702..472808+ (Clytia hemisphaerica) ATGTCATCTACTTTTGGAACCAAATCCATTGGTGAAAAAGACTGGAAAGC ACATGGCCACAATGTTGCAACAAACTCTAACACTGTGGCAACAAAATCAA GGCCACCTGGACCTGATTGGACATCAAGTTTGAGGTGTATCAAACAAGAC AATGTGATTTATCCAAATGATGAACCTGTTCTTCGACAGGGGATGAGACC ATTCCTTCATAAGAATGAACAAAGTCTGGAAGAATGGGCTTATTACAGAG ACGGATCAAGAAGTGGCAAACGTTGTATCATCAATGGTAAACGCCAAGGG AACGTCCAATCGATCAATGAGATAAGCGTCGAAAGCACCATTGGGAATAG ATCAAAAGTTCCTGACCCTCGTGGCGGAGTCGATAGCCTTACAGCAGGAG ACAAAAGTTATGCAGTGCCTGAATTTTCGAAAGGATTCCATAAAGAAGGT TCAACGCTACCCGCTGTTAATTTCAGCCGGTCCAATAAAATCGTGACAGA TACTTTCATTCCTCTGCAACCACTTCCACAACATAAAAGcaTATCTTACA AGGAGAAAGAGGTGGTCCGTAAAAAGAATCATGAAGTTTTGGAAGTGGAA GGGCTTGACAAATGGGATCCAGCGCCGGCTTTAACACCCGGAGTTTTCAA ACATTGAATGTCATCTACTTTTGGAACCAAATCCATTGGTGAAAAAGACT GGAAAGCACATGGCCACAATGTTGCAACAAACTCTAACACTGTGGCAACA AAATCAAGGCCACCTGGACCTGATTGGACATCAAGTTTGAGGTGTATCAA ACAAGACAATGTGATTTATCCAAATGATGAACCTGTTCTTCGACAGGGGA TGAGACCATTCCTTCATAAGAATGAACAAAGTCTGGAAGAATGGGCTTAT TACAGAGACGGATCAAGAAGTGGCAAACGTTGTATCATCAATGGTAAACG CCAAGGGAACGTCCAATCGATCAATGAGATAAGCGTCGAAAGCACCATTG GGAATAGATCAAAAGTTCCTGACCCTCGTGGCGGAGTCGATAGCCTTACA GCAGGAGACAAAAGTTATGCAGTGCCTGAATTTTCGAAAGGATTCCATAA AGAAGGTTCAACGCTACCCGCTGTTAATTTCAGCCGGTCCAATAAAATCG TGACAGATACTTTCATTCCTCTGCAACCACTTCCACAACATAAAAGcaTA TCTTACAAGGAGAAAGAGGTGGTCCGTAAAAAGAATCATGAAGTTTTGGA AGTGGAAGGGCTTGACAAATGGGATCCAGCGCCGGCTTTAACACCCGGAG TTTTCAAACATTGAATGTCATCTACTTTTGGAACCAAATCCATTGGTGAA AAAGACTGGAAAGCACATGGCCACAATGTTGCAACAAACTCTAACACTGT GGCAACAAAATCAAGGCCACCTGGACCTGATTGGACATCAAGTTTGAGGT GTATCAAACAAGACAATGTGATTTATCCAAATGATGAACCTGTTCTTCGA CAGGGGATGAGACCATTCCTTCATAAGAATGAACAAAGTCTGGAAGAATG GGCTTATTACAGAGACGGATCAAGAAGTGGCAAACGTTGTATCATCAATG GTAAACGCCAAGGGAACGTCCAATCGATCAATGAGATAAGCGTCGAAAGC ACCATTGGGAATAGATCAAAAGTTCCTGACCCTCGTGGCGGAGTCGATAG CCTTACAGCAGGAGACAAAAGTTATGCAGTGCCTGAATTTTCGAAAGGAT TCCATAAAGAAGGTTCAACGCTACCCGCTGTTAATTTCAGCCGGTCCAAT AAAATCGTGACAGATACTTTCATTCCTCTGCAACCACTTCCACAACATAA AAGcaTATCTTACAAGGAGAAAGAGGTGGTCCGTAAAAAGAATCATGAAG TTTTGGAAGTGGAAGGGCTTGACAAATGGGATCCAGCGCCGGCTTTAACA CCCGGAGTTTTCAAACATTGAATGTCATCTACTTTTGGAACCAAATCCAT TGGTGAAAAAGACTGGAAAGCACATGGCCACAATGTTGCAACAAACTCTA ACACTGTGGCAACAAAATCAAGGCCACCTGGACCTGATTGGACATCAAGT TTGAGGTGTATCAAACAAGACAATGTGATTTATCCAAATGATGAACCTGT TCTTCGACAGGGGATGAGACCATTCCTTCATAAGAATGAACAAAGTCTGG AAGAATGGGCTTATTACAGAGACGGATCAAGAAGTGGCAAACGTTGTATC ATCAATGGTAAACGCCAAGGGAACGTCCAATCGATCAATGAGATAAGCGT CGAAAGCACCATTGGGAATAGATCAAAAGTTCCTGACCCTCGTGGCGGAG TCGATAGCCTTACAGCAGGAGACAAAAGTTATGCAGTGCCTGAATTTTCG AAAGGATTCCATAAAGAAGGTTCAACGCTACCCGCTGTTAATTTCAGCCG GTCCAATAAAATCGTGACAGATACTTTCATTCCTCTGCAACCACTTCCAC AACATAAAAGcaTATCTTACAAGGAGAAAGAGGTGGTCCGTAAAAAGAAT CATGAAGTTTTGGAAGTGGAAGGGCTTGACAAATGGGATCCAGCGCCGGC TTTAACACCCGGAGTTTTCAAACATTGAATGTCATCTACTTTTGGAACCA AATCCATTGGTGAAAAAGACTGGAAAGCACATGGCCACAATGTTGCAACA AACTCTAACACTGTGGCAACAAAATCAAGGCCACCTGGACCTGATTGGAC ATCAAGTTTGAGGTGTATCAAACAAGACAATGTGATTTATCCAAATGATG AACCTGTTCTTCGACAGGGGATGAGACCATTCCTTCATAAGAATGAACAA AGTCTGGAAGAATGGGCTTATTACAGAGACGGATCAAGAAGTGGCAAACG TTGTATCATCAATGGTAAACGCCAAGGGAACGTCCAATCGATCAATGAGA TAAGCGTCGAAAGCACCATTGGGAATAGATCAAAAGTTCCTGACCCTCGT GGCGGAGTCGATAGCCTTACAGCAGGAGACAAAAGTTATGCAGTGCCTGA ATTTTCGAAAGGATTCCATAAAGAAGGTTCAACGCTACCCGCTGTTAATT TCAGCCGGTCCAATAAAATCGTGACAGATACTTTCATTCCTCTGCAACCA CTTCCACAACATAAAAGcaTATCTTACAAGGAGAAAGAGGTGGTCCGTAA AAAGAATCATGAAGTTTTGGAAGTGGAAGGGCTTGACAAATGGGATCCAG CGCCGGCTTTAACACCCGGAGTTTTCAAACATTGAATGTCATCTACTTTT GGAACCAAATCCATTGGTGAAAAAGACTGGAAAGCACATGGCCACAATGT TGCAACAAACTCTAACACTGTGGCAACAAAATCAAGGCCACCTGGACCTG ATTGGACATCAAGTTTGAGGTGTATCAAACAAGACAATGTGATTTATCCA AATGATGAACCTGTTCTTCGACAGGGGATGAGACCATTCCTTCATAAGAA TGAACAAAGTCTGGAAGAATGGGCTTATTACAGAGACGGATCAAGAAGTG GCAAACGTTGTATCATCAATGGTAAACGCCAAGGGAACGTCCAATCGATC AATGAGATAAGCGTCGAAAGCACCATTGGGAATAGATCAAAAGTTCCTGA CCCTCGTGGCGGAGTCGATAGCCTTACAGCAGGAGACAAAAGTTATGCAG TGCCTGAATTTTCGAAAGGATTCCATAAAGAAGGTTCAACGCTACCCGCT GTTAATTTCAGCCGGTCCAATAAAATCGTGACAGATACTTTCATTCCTCT GCAACCACTTCCACAACATAAAAGcaTATCTTACAAGGAGAAAGAGGTGG TCCGTAAAAAGAATCATGAAGTTTTGGAAGTGGAAGGGCTTGACAAATGG GATCCAGCGCCGGCTTTAACACCCGGAGTTTTCAAACATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00046258-exon-scaffold_108-1491911889:469702..469841 | TCONS_00046258-exon-scaffold_108-1491911889:469702..469841 | Clytia hemisphaerica | exon |
TCONS_00046258-exon-scaffold_108-1510915933:469702..469841 | TCONS_00046258-exon-scaffold_108-1510915933:469702..469841 | Clytia hemisphaerica | exon |
TCONS_00046258-exon-scaffold_108-1575043694:469702..469841 | TCONS_00046258-exon-scaffold_108-1575043694:469702..469841 | Clytia hemisphaerica | exon |
TCONS_00046258-exon-scaffold_108-1491911889:470319..470425 | TCONS_00046258-exon-scaffold_108-1491911889:470319..470425 | Clytia hemisphaerica | exon |
TCONS_00046258-exon-scaffold_108-1510915933:470319..470425 | TCONS_00046258-exon-scaffold_108-1510915933:470319..470425 | Clytia hemisphaerica | exon |
TCONS_00046258-exon-scaffold_108-1575043694:470319..470425 | TCONS_00046258-exon-scaffold_108-1575043694:470319..470425 | Clytia hemisphaerica | exon |
TCONS_00046258-exon-scaffold_108-1491911889:470765..470914 | TCONS_00046258-exon-scaffold_108-1491911889:470765..470914 | Clytia hemisphaerica | exon |
TCONS_00046258-exon-scaffold_108-1510915933:470765..470914 | TCONS_00046258-exon-scaffold_108-1510915933:470765..470914 | Clytia hemisphaerica | exon |
TCONS_00046258-exon-scaffold_108-1575043694:470765..470914 | TCONS_00046258-exon-scaffold_108-1575043694:470765..470914 | Clytia hemisphaerica | exon |
TCONS_00046258-exon-scaffold_108-1491911889:471259..471376 | TCONS_00046258-exon-scaffold_108-1491911889:471259..471376 | Clytia hemisphaerica | exon |
TCONS_00046258-exon-scaffold_108-1510915933:471259..471376 | TCONS_00046258-exon-scaffold_108-1510915933:471259..471376 | Clytia hemisphaerica | exon |
TCONS_00046258-exon-scaffold_108-1575043694:471259..471376 | TCONS_00046258-exon-scaffold_108-1575043694:471259..471376 | Clytia hemisphaerica | exon |
TCONS_00046258-exon-scaffold_108-1491911889:471926..471988 | TCONS_00046258-exon-scaffold_108-1491911889:471926..471988 | Clytia hemisphaerica | exon |
TCONS_00046258-exon-scaffold_108-1510915933:471926..471988 | TCONS_00046258-exon-scaffold_108-1510915933:471926..471988 | Clytia hemisphaerica | exon |
TCONS_00046258-exon-scaffold_108-1575043694:471926..471988 | TCONS_00046258-exon-scaffold_108-1575043694:471926..471988 | Clytia hemisphaerica | exon |
TCONS_00046258-exon-scaffold_108-1491911889:472455..472808 | TCONS_00046258-exon-scaffold_108-1491911889:472455..472808 | Clytia hemisphaerica | exon |
TCONS_00046258-exon-scaffold_108-1510915933:472455..472808 | TCONS_00046258-exon-scaffold_108-1510915933:472455..472808 | Clytia hemisphaerica | exon |
TCONS_00046258-exon-scaffold_108-1575043694:472455..472808 | TCONS_00046258-exon-scaffold_108-1575043694:472455..472808 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_108 | supercontig | scaffold_108:469702..472808 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR029165 | SASRP1 |
Blast
BLAST of TCONS_00046258 vs. Swiss-Prot (Human)
Match: SPAS1 (Spermatogenesis-associated serine-rich protein 1 OS=Homo sapiens GN=SPATS1 PE=2 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 3.420e-27 Identity = 64/145 (44.14%), Postives = 80/145 (55.17%), Query Frame = 1
Query: 271 EWAYYRDGSRS------GKRCIINGKRQGNVQSINEISVESTIGNRSKVPDPRGGVDSLTAGDKSYAVPEFSKGFHKEGSTLPAVNFSRSNKIVT-----DTFIPLQPLPQHKSISYKEKEVVRKKNHEVLEVEGLDKWDPAPAL 672
EW +Y S + GK+C NG GN +S++E +V+ G + DPR G+ LT GD Y PE SKGFHK GS LP VNFS IV DTFIPL+PLPQ ++ + KE +E+ EVE LD W PA L
Sbjct: 144 EWTFYPRFSSNIHTYHVGKQCFFNGVFLGNKRSLSERTVDKCFGRKKYDIDPRNGIPKLTPGDNPYMYPEQSKGFHKAGSMLPPVNFS----IVPYEKKFDTFIPLEPLPQIPNLPFWVKEKANSLKNEIQEVEELDNWQPAVPL 284
The following BLAST results are available for this feature:
|