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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046260 ID=TCONS_00046260|Name=TCONS_00046260|organism=Clytia hemisphaerica|type=transcript|length=3199bpRun BLAST on NCBI protein sequence of TCONS_00046260-protein >TCONS_00046260-protein ID=TCONS_00046260-protein|Name=TCONS_00046260-protein|organism=Clytia hemisphaerica|type=polypeptide|length=317bp QGGMGAALLTEPEKIKSILTTLVNGVSIPVTCKIRILPELEDTLELVKLIRun BLAST on NCBI transcript from alignment at scaffold_108:476253..494221+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046260 ID=TCONS_00046260|Name=TCONS_00046260|organism=Clytia hemisphaerica|type=transcript|length=17969bp|location=Sequence derived from alignment at scaffold_108:476253..494221+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_108:476253..494221+ >TCONS_00046260 ID=TCONS_00046260|Name=TCONS_00046260|organism=Clytia hemisphaerica|type=CDS|length=11448bp|location=Sequence derived from alignment at scaffold_108:476253..494221+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046260 vs. Swiss-Prot (Human)
Match: DUS2L (tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Homo sapiens GN=DUS2 PE=1 SV=1) HSP 1 Score: 268.47 bits (685), Expect = 1.089e-78 Identity = 147/319 (46.08%), Postives = 208/319 (65.20%), Query Frame = 1
Query: 1 QGGMGAALLTEPEKIKSILTTLVNGVSIPVTCKIRILPELEDTLELVKLIEKTGVKALGVHGRWRDLRSSQPCQCSFIKAIRETISIPVIANGGSL-KIKKYSDIASFKEETNCSSVMLARAAQWNPSVFRKEGNLDVKDIIKEYVKLAVEYDSPDVNLKYVLCKMIGDTCGSELGRKVVASRDTQDICVATGLEEF--RXXXXXXXXXXXXXXXXXXXTDNCKKRKLDHIIAEVAYNRKIYPATESPIQKVHELCMAKRLGKPSWETVSGE-DKMYKSVLTVGGIKYSSTLSDRRKKSAEQSAAIVYLHHHNIHDGRL 945
+GGMGAALL++P+KI+ IL+TLV G PVTCKIRILP LEDTL LVK IE+TG+ A+ VHGR R+ R P C IKAI +T+SIPVIANGGS I++YSDI F++ T SSVM+ARAA WNPS+F KEG +++++++Y++ AV+YD+ N KY LC+M+ + S GR + A++ +++IC A GL F Q + + + E+T + I V ++R+ YPA +P + E C ++L +P +ETV D+++ S++TV KY STL D+ KK AEQ+AAIV L + +GRL
Sbjct: 123 KGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWNPSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLREQLESPQGRLLHAAQSSREICEAFGLGAFYEETTQELDAQQARLSAKTSEQTGEPAEDTSGVIKMAVKFDRRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWDKSKKLAEQAAAIVCLRSQGLPEGRL 441 The following BLAST results are available for this feature:
BLAST of TCONS_00046260 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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