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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046309 ID=TCONS_00046309|Name=TCONS_00046309|organism=Clytia hemisphaerica|type=transcript|length=1761bp
ACAAATCATAATCATGACATGGTTTCGAGAAAgctcgagaaaaaaaatat
agcaGAGAAAGTTTTTCTATAAATTGAGTTTAAAAATGAACTTTGAATCA
AACACAAAACATTTCAGAAGAGCCAAGGACAAAGTCATACTAAGAAGAAA
ATTACAAAGAACAAATTTAAGTTTAATATTACTACGGAGTACGACTTAAA
AGCAATAGatggattttttttgaagacaaacTTTTCAACAACGAAGCAGT
TATTTTGATCCATGGGGGTCACAACCAAGAGTGTTTTACCCTCAGCGTCA
ACCCAGAAGACAAGTGTTTATAGATCCTGAGGATTACTATGACCCAATct
ttggtgaaaataagaagtCAGATGCGAAATGTAAATGCAGAGATTGTCGA
ATCCGGGAAGCCGCAGTACAGCAACGTAAAAACCAGCAAAATGTTCGACG
AAATGCGTTCAAAAAACGTCAAAGGCAGCCCACACACGATGGAGATGTCG
TCGATGATGCAAATACGGTCTCGGAAGAGGACAAGAAATTCGATTCACCA
CAAAATCATCAAGATACGACTTTGTTGGTTTCAGACGTAGACGTAAATAA
AGAAGAATCGAGCGATGTTGAACAACGATTACAAGACATTGACATTCAAT
CAGAAACAGAAAAACAGAGCAACGAGGAGagagaaagttttaaagaatcC
GAGGATGAAAGTCAGTCGAATTCAGAAGAATCTGAATCTGAAGATGATCA
CCAACAACCAGAGCAAACGCATGAAGATCCGAttcaacaaaaattaaaaa
caattgaTGATATTCAATCTGAAGTTGAAAAACTCGATCAAAAAGTTGCC
AAAATTACTGATGAGTCGAAGAAGTATGATTATCTTTATTGTGAAGAAAT
GTTGACAAAGTGTTTGTTGAAATTGGACGATATTTTAGCTGACGGTGAGG
ATGTAATCCGTACAGCCCGAAAGCGTTTAGTGAACGACATAAATCGAGCG
TTGGCAAGCTTAGAAGAAAAACGAGAAGTATATGCATCAGAATAAAGacg
ctttgatttttaaaaactgaaaacaTTGTAAATAGTTGCTAAAACTCATG
AAATCTCTTATTTATCCAATGCGTAGTGTAATTTTGTATTCTTATTCGAT
CCTCTATTCGATGTTCTAAAGAAGGTTCACATTATAATGACTATATACGA
AGATAaactttttgattattttttagatCTAAAAAGCAATTTGTCAAAAG
GGGtatagaaaataaacaaatatatttttgtatAAATATCAAGTTTATTC
TAAGTTTagtaatttgaaatataaaagtACGACATAAGTACACAATTATT
AGCTTTTAAGTCTTCCATCGTGAATGTTGTGATGATGTAGGTAAACTATG
GCTGCTGATTGTTCCGCTGATTTCTTTCTACGATCACTGTAATAAGAATA
TcaagatatttaattttaaaatctcaAAGTCTTCGCACCGTGGAAATCTG
GAAGAAAAtccaatcaattttttttttcgaatttccaTCCTTTAAAAAGG
TATTAAAAGTAGTTCAAGAAAGTTTGGCAAATAATGATAGTGTAGCCGTA
AGCATATACCCGACACCTTCTAACCCTGTTACCTTAAACTTAGCTTAATC
TTACCTTAATGTTGATGAGTACTTGATTCCACCGACTGTCAACACAGATT
TGTACATTTTATCTTCACCTGACACCTTCTCCCATGAAGGTTTGCCGAGT
CTCTTGGCCct Run BLAST on NCBI transcript from alignment at scaffold_108:484132..486392- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046309 ID=TCONS_00046309|Name=TCONS_00046309|organism=Clytia hemisphaerica|type=transcript|length=2261bp|location=Sequence derived from alignment at scaffold_108:484132..486392- (Clytia hemisphaerica)
ACAAATCATAATCATGACATGGTTTCGAGAAAGCTCGAGAAAAAAAATAT
AGCAGAGAAAGTTTTTCTATAAATTGAGTTTAAAAATGAACTTTGAATCA
AACACAAAACATTTCAGAAGAGCCAAGGACAAAGTCATACTAAGAAGAAA
ATTACAAAGAACAAATTTAAGTTTAATATTACTACGGAGTACGACTTAAA
AGCAATAGATGGATTTTTTTTGAAGACAAACTTTTCAACAACGAAGCAGT
TATTTTGATCCATGGGGGTCACAACCAAGAGTGTTTTACCCTCAGCGTCA
ACCCAGAAGACAAGTGTTTATAGATCCTGAGGATTACTATGACCCAATCT
TTGGTGAAAATAAGAAGTCAGATGCGAAATGTAAATGCAGAGATTGTCGA
ATCCGGGAAGCCGCAGTACAGCAACGTAAAAACCAGCAAAATGTTCGACG
AAATGCGTTCAAAAAACGTCAAAGGCAGCCCACACACGATGGAGATGTCG
TCGATGATGCAAATACGGTCTCGGAAGAGGACAAGAAATTCGATTCACCA
CAAAATCATCAAGATACGACTTTGTTGGTTTCAGACGTAGACGTAAATAA
AGAAGAATCGAGCGATGTTGAACAACGATTACAAGACATTGACATTCAAT
CAGAAACAGAAAAACAGAGCAACGAGGAGAGAGAAAGTTTTAAAGAATCC
GAGGATGAAAGTCAGTCGAATTCAGAAGAATCTGAATCTGAAGATGATCA
CCAACAACCAGAGCAAACGCATGAAGATCCGATTCAACAAAAATTAAAAA
CAATTGATGATATTCAATCTGAAGTTGAAAAACTCGATCAAAAAGTTGCC
AAAATTACTGATGAGTCGAAGAAGTATGATTATCTTTATTGTGAAGAAAT
GTTGACAAAGTGTTTGTTGAAATTGGACGATATTTTAGCTGACGGTGAGG
ATGTAATCCGTACAGCCCGAAAGCGTTTAGTGAACGACATAAATCGAGCG
TTGGCAAGCTTAGAAGAAAAACGAGAAGTATATGCATCAGAATAAAGACG
CTTTGATTTTTAAAAACTGAAAACATTGTAAATAGTTGCTAAAACTCATG
AAATCTCTTATTTATCCAATGCGTAGTGTAATTTTGTATTCTTATTCGAT
CCTCTATTCGATGTTCTAAAGAAGGTTCACATTATAATGACTATATACGA
AGATAAACTTTTTGATTATTTTTTAGATCTAAAAAGCAATTTGTCAAAAG
GGGTATAGAAAATAAACAAATATATTTTTGTATAAATATCAAGTTTATTC
TAAGTTTAGTAATTTGAAATATAAAAGTACGACATAAGTACACAATTATT
AGCTTTTAAGTCTTCCATCGTGAATGTTGTGATGATGTAGGTAAACTATG
GCTGCTGATTGTTCCGCTGATTTCTTTCTACGATCACTGTAATAAGAATA
TCAAGATATTTAATTTTAAAATCTCAAAGTCTTCGCACCGTGGAAATCTG
GAAGAAAATCCAATCAATTTTTTTTTTCGAATTTCCATCCTTTAAAAAGG
TATTAAAAGTAGTTCAAGAAAGTTTGGCAAATAATGATAGTGTAGCCGTA
AGCATATACCCGACACCTTCTAACCCTGTTACCTTAAACTTAGCTTAATC
TTACCTTAATGTTGATGAGTACTTGATTCCACCGACTGTCAACACAGATT
TGTACATTTTATCTTCACCTGACACCTGTATTAAAACACGTAAAACGTAG
TCATATCACCGTAGTTCCACAAATAGTAGATTTTTTTATAGTTTTCCCCA
CCATGGCTTCAAAACACCCTCAGATTAACCTCTGACTAGAAGTTTTTCCC
AAATAAATTGTTTAAAAGCAATACAAATTGCCACAAATTACGGATTTTTA
CTAAAAAATTATATACTTTCCTTAATTTATTGGTTTTACGAAAACAATAA
ACAGCAAAAGAATATCCTTTTTTTCTCTATAATTGTACAACATTTAAAGG
TTGCTAACCACCCACGTAGGTTCCTAGACCCAAAGGACCCTTGCTTTACG
AGCTGAAAACAATAGAAATTTCAAAATTTTGATGTACATTTCTATCCGAC
TGAGATAAAAAATTTCACCGGACATGAAACAGGGGTGTAGAATTAAAGAC
TAGCAAATTAAACTAAACTCTCTTAGACCAAGCGATTAATTTTGTAGTTT
TAAAGCCTCACGAAAATCTACTTACAGTCTCCCATGAAGGTTTGCCGAGT
CTCTTGGCCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046309-exon-scaffold_108-1575043694:484666..486392 | TCONS_00046309-exon-scaffold_108-1575043694:484666..486392 | Clytia hemisphaerica | exon |
| TCONS_00046309-exon-scaffold_108-1575043694:484132..484165 | TCONS_00046309-exon-scaffold_108-1575043694:484132..484165 | Clytia hemisphaerica | exon |
| TCONS_00046309-exon-scaffold_108-1510915933:484666..486392 | TCONS_00046309-exon-scaffold_108-1510915933:484666..486392 | Clytia hemisphaerica | exon |
| TCONS_00046309-exon-scaffold_108-1510915933:484132..484165 | TCONS_00046309-exon-scaffold_108-1510915933:484132..484165 | Clytia hemisphaerica | exon |
| TCONS_00046309-exon-scaffold_108-1491911889:484666..486392 | TCONS_00046309-exon-scaffold_108-1491911889:484666..486392 | Clytia hemisphaerica | exon |
| TCONS_00046309-exon-scaffold_108-1491911889:484132..484165 | TCONS_00046309-exon-scaffold_108-1491911889:484132..484165 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_108 | supercontig | scaffold_108:484132..486392 - |
Blast
The following BLAST results are available for this feature:
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