|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046313 ID=TCONS_00046313|Name=TCONS_00046313|organism=Clytia hemisphaerica|type=transcript|length=1479bpRun BLAST on NCBI protein sequence of TCONS_00046313-protein >TCONS_00046313-protein ID=TCONS_00046313-protein|Name=TCONS_00046313-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp MSVDEDTELRDLVAQTLETNGVLNKIRAELRANVFLALEEQDALKKKTLSRun BLAST on NCBI transcript from alignment at scaffold_108:571578..593757- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046313 ID=TCONS_00046313|Name=TCONS_00046313|organism=Clytia hemisphaerica|type=transcript|length=22180bp|location=Sequence derived from alignment at scaffold_108:571578..593757- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_108:571578..593757- >TCONS_00046313 ID=TCONS_00046313|Name=TCONS_00046313|organism=Clytia hemisphaerica|type=CDS|length=14976bp|location=Sequence derived from alignment at scaffold_108:571578..593757- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046313 vs. Swiss-Prot (Human)
Match: FR1OP (FGFR1 oncogene partner OS=Homo sapiens GN=FGFR1OP PE=1 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 7.280e-24 Identity = 68/124 (54.84%), Postives = 90/124 (72.58%), Query Frame = 3
Query: 54 DEDTELRDLVAQTLETNGVLNKIRAELRANVFLALEEQDAXXXXX-XXXXXXXXXXETKEGMLAFNAVYEFLEFFNLDFTLAVLKPE-SNVSKLSPREKLINDFNMQTVDPK--QPLLVELLKK 413
+EDTELRDL+ QTLE +GVLN+I+AELRA VFLALEEQ+ ++ KT L N++LK FL TK+G L + V EFL+FFNLDFTLAV +PE S + L RE L D + + PLL+E++++
Sbjct: 11 EEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNESLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAEGTVGGPLLLEVIRR 134 The following BLAST results are available for this feature:
BLAST of TCONS_00046313 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.