TCONS_00046314 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046314
Unique NameTCONS_00046314
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1938

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046314 ID=TCONS_00046314|Name=TCONS_00046314|organism=Clytia hemisphaerica|type=transcript|length=1938bp
TCTTGTAAAACCTTCTGAATTTAATCGTTTTACTTTACTGAAGAagttca
ataaaatttttttagtGATAGATAATATAATGAATGTATCAAAAAATATG
TCAACACCATTATTAATGTCACCAGAGTTATCAAATCCACCTGAAATTGA
GAAGATATTGGATACAACCCTTACAAAGGACAACAAAAGATACTACAAAG
TTAAATGGATTAAAGTCACTTGGGAATCGGAAGATGATATTGCTTACTTC
AACAATCTCATTGAAGCATTTTGGACAGAGTACACTAAAGAATGTTTATT
GCAGTCAGAAACTGAAAGCTGCTCAAATGATTTGACCAGCAAAGATGCTT
GCCAGTATAACAACTTGGACAATATTGGCAGCAAAGAGATGTACAATTAT
AATCTGCTGCAACAACATAACGATGTTGTTTCTGACAGCCACCAATCAAG
CGACAAGCATCTGTTATCTCACACCCCAGTAGAATCAAATCTATTATCTA
TATCTAGTCACGAGATGTTGTCCCCTTCAAATTGTAGCTCACACCATGTA
GCAGCGCCATCTGACATGCTACACTCTCACATCACCAATAATGAGCTTGA
CATGATCCCATCGTTCTCTCAAGATTGTGATTATAGTTTAGATGAATCAA
ACTTGTTAAAGTCTAATGAAGAACAGAATCAAACACAAATGATTGAAACT
GATGTAACACCAGCTAAACAACTCTCTCATACACTCTTATGTAAGGATAT
AGAGAAGACAGAGCCAAACAAATCTTCACTGCAAAAAGTTGTTTACAAAT
GTTCATTTTGTGCCATCGATTttgaatcaaaagaaaaatatttagaacaT
GAAAAATCACATGCAGATCGAAAGTGTATTATTTGCGGAAAGGAATTCCA
ACGTCTGGGTCACTTGAAGGTGCACATGCATTCTCATAATAATATAAGAC
CCTTTGAATGCAAAGAGTGTGGAAAAGCCTTCCATGAGAAATGTTCGTTA
AATAAACATCAGCAAGTTCATTCTAATGTGCGCAATCATGAATGTTCCAC
ATGTGGTATGAAATTTAAGCGAGCACAGCATCTTCGAAGACATAATGAAg
tacataaacaaaacaaacagtTTACTtgtcttttatgtaataaacaattt
ttacaaaaatctgcccTTGAAGCTCATATCAATGTTCATACAGGAAATAA
GCCATTTAAATGTAAGGTTTGTTCTCATTCGTTTGCTGACAGGGCAACGT
TAAGAAGACATACTTTAACGCATGCTAAAGAAAAACCTTACCAATGTTTG
TTATGCAGTAAAGAGTTTTGCCGgcaaaattctttgaaacttCACATGGT
GAGTAAACACAAAGATTCAGAAGAATCTGCAACTTCTTCAGAATCAACTG
AGAAGAAAAGCCAAGATGATTAAAATTAAAGTAATATTCTATCATAATTT
ATTTTAgacattttaatgattttattatGCCTAGTTTATTTATGCTCAAG
TTTCAGATGTAGATAAGAACTTGTTTTACATTCACTCACCATCAAGATAA
GGTTATCACTGTTTTTTACTAACATTCTGCCGGTTGGTAGGGTGAAGGTT
TAAATTACAGGCTTGCGCCAAAATGGACTTTGTTCGAGTCCTAAGCACTT
CCAGGCAGGGAAGTATGGTGAAATATGGTGAtggactctctaccttcact
tattttgttaacttttacatttttttgtttgtttatgatTTGATGTGTTT
TTGCTTGTCCTCTCAGTCTCATAAACAATTTAATTATCTGAATACCAGGC
tcaatattgaaattcaataatttatatcagcaaaatatttaaaaaaactt
gattCTTAGATTTCAGAAATGAATTTAAATGATTTTAGACTAGTAAGTAA
ATTCACTGGtgtagtttcttataaaaacatgatttgat
Run BLAST on NCBI

protein sequence of TCONS_00046314-protein

>TCONS_00046314-protein ID=TCONS_00046314-protein|Name=TCONS_00046314-protein|organism=Clytia hemisphaerica|type=polypeptide|length=473bp
LVKPSEFNRFTLLKKFNKIFLVIDNIMNVSKNMSTPLLMSPELSNPPEIE
KILDTTLTKDNKRYYKVKWIKVTWESEDDIAYFNNLIEAFWTEYTKECLL
QSETESCSNDLTSKDACQYNNLDNIGSKEMYNYNLLQQHNDVVSDSHQSS
DKHLLSHTPVESNLLSISSHEMLSPSNCSSHHVAAPSDMLHSHITNNELD
MIPSFSQDCDYSLDESNLLKSNEEQNQTQMIETDVTPAKQLSHTLLCKDI
EKTEPNKSSLQKVVYKCSFCAIDFESKEKYLEHEKSHADRKCIICGKEFQ
RLGHLKVHMHSHNNIRPFECKECGKAFHEKCSLNKHQQVHSNVRNHECST
CGMKFKRAQHLRRHNEVHKQNKQFTCLLCNKQFLQKSALEAHINVHTGNK
PFKCKVCSHSFADRATLRRHTLTHAKEKPYQCLLCSKEFCRQNSLKLHMV
SKHKDSEESATSSESTEKKSQDD
Run BLAST on NCBI

transcript from alignment at scaffold_108:594066..597484-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046314 ID=TCONS_00046314|Name=TCONS_00046314|organism=Clytia hemisphaerica|type=transcript|length=3419bp|location=Sequence derived from alignment at scaffold_108:594066..597484- (Clytia hemisphaerica)
TCTTGTAAAACCTTCTGAATTTAATCGTTTTACTTTACTGAAGAAGTTCA
ATAAAATTTTTTTAGTGATAGATAATATAATGAATGTATCAAAAAATATG
TCAACACCATTATTAATGTCACCAGAGTTATCAAATCCACCTGAAATTGA
GAAGATATTGGATACAACCCTTACAAAGGTTTCGTCATTTATATTTTTTA
TGAAAGCAGCTGAAAGATTTGTTACTTTCACTGCCTTGAGAATAGAGAGC
AAAACTCACAGGGCTTCAAAAGATGGTCGGACAAATCACTCCTACCCAAT
AAACATAACCTACCCAAGAGTCATCATTTTCAAGCTAAAGCAACTGTGAT
CAGACAAACCACTTGAAATCTTGTGTTTCAGGAAAGCAGCTTTCAAAAAG
CTTTGTAATCTGATTCGACATACATAGAAATAAAATAATGTTTCAAAATT
TAAAACATCTGAAAATTTATCCTTCTTCTAGGACAACAAAAGATACTACA
AAGTTAAATGGATTAAAGTCACTTGGGAATCGGAAGATGATATTGCTTAC
TTCAACAATCTCATTGAAGCATTTTGGACAGAGTACACTAAAGAATGTTT
ATTGCAGTCAGAAACTGAAAGCTGCTCAAATGTAATACTCTATCCAACTA
TTTACGAGGGATCTTGTCTAAGAAGTTGATATATTGCACTCAGAAAATTC
ACTAATTTTTCTGCTAATTCAAAAAGTCTTAATATCTAAAGAATTTGAGT
TTAGCTCACAAAAAATTGCTATTTGACAGTTCCTGTGTTGCATCTGATTT
TCTTTTAGATTATACAGATAAATCATTTTAATTTTATTATTCTATAAAGT
TGAGATGCTAAAAGATTAGTTTAGATATAATGCTAAATCATATACCATCT
ACCACCTATAGGATTTGACCAGCAAAGATGCTTGCCAGTATAACAACTTG
GACAATATTGGCAGCAAAGAGATGTACAATTATAATCTGCTGCAACAACA
TAACGATGTTGTTTCTGACAGCCACCAATCAAGCGACAAGCATCTGTTAT
CTCACACCCCAGTAGAATCAAATCTATTATCTATATCTAGTCACGAGATG
TTGTCCCCTTCAAATTGTAGCTCACACCATGTAGCAGCGCCATCTGACAT
GCTACACTCTCACATCACCAATAATGAGCTTGACATGATCCCATCGTTCT
CTCAAGATTGTGATTATAGTTTAGATGAATCAAACTTGTTAAAGTCTAAT
GAAGAACAGAATCAAACACAAATGATTGGTACATAGTTTTTCATTGTTAG
AGAGAACGGGAAATATGTCAGGAAAATATATTAAGCTAAATGTTCATTAA
AATCAAAGCACATTATTTTCAGATAGGATTTCATCACTTTATCTTAAAGC
TACTTTTGAAAGCATTAGAGTTCTTTGAATTTTCCTTTATACTGAGATTT
TGTCAGTAGTTTACTTAAATTTTCAATTTTTTGCCCATAGAAACTGATGT
AACACCAGCTAAACAACTCTCTCATACACTCTTATGTAAGGATATAGAGA
AGACAGAGCCAAACAAATCTTCACTGCAAAAAGTTGTTTACAAATGTTCA
TTTTGTGCCATCGATTTTGAATCAAAAGAAAAATATTTAGAACATGAAAA
ATCACATGCAGATCGAAAGTGTATTATTTGCGGAAAGGAATTCCAACGTC
TGGGTCACTTGAAGGTGCACATGCATTCTCATAATAATATAAGACCCTTT
GAATGCAAAGAGTGTGGAAAAGCCTTCCATGAGAAATGTTCGTTAAATAA
ACATCAGCAAGTTCATTCTAATGAGCGAAATCATGAATGTTCCACATGTG
GTATGAAATTTAAGCGAGCACAGCATCTTCGAAGACATAATGAAGTACAT
AAACAAAACAAACAGTTTACTTGTCTTTTATGTAATAAACAATTTTTACA
AAAATCTGCCCTTGAAGCTCATATCAATGTTCATACAGGAAATAAGCCAT
TTAAATGTAAGGTTTGTTCTCATTCGTTTGCTGACAGGGCAACGTTAAGA
AGACATACTTTAACGCATGCTAAAGAAAAACCTTACCAATGTTTGTTATG
CAGTAAAGAGTTTTGCCGGCAAAATTCTTTGAAACTTCACATGGCGAGTA
AACACAAAGATTCAGAAGAATCTGCAACTTCTTCAGAATCAACTGAGAAG
AAAAGCCAAGATGATTAAAATTAAAGTAATATTCTATCATAATTTATTTT
AGACATTTTAATGATTTTATTATGCCTAGTTTATTTATGCTCAAGTTTCA
GATGTAGATAAACTTGTTATACATTTACTCACCATCAAGATAACCTATGT
GTTATCACTGTTTTTTACTAACATTCTGCCGGTTGGTAGGGTGAAGGTTT
AAATTACAGGCTTGCGCCAAAATGGACTTTGTTCGAGCCCTAAGCACTTC
CAGGCAGGGAAGTATGGTGAAATATGGTGATGGACTCTCNCAGCAAGTAC
ATTCTAATGTGCGCAATCATGAATGTTCCACATGTGGTATGAAATTTAAG
CGAGCACAGCATCTTCGAAGACATAATGAAGTACATAAACAAAACAAACA
GTTTACTTGTCTTTTATGTAATAAACAATTTTTACAAAAATCTGCCCTTG
AAGCTCATATCAATGTTCATACAGGAAATAAGCCATTTAAATGTAAGGTT
TGTTCTCATTCGTTTGCTGACAGGGCAACGTTAAGAAGACATACTTTAAC
GCATGCTAAAGAAAAACCTTACCAATGTTTGTTATGCAGTAAAGAGTTTT
GCCGGCAAAATTCTTTGAAACTTCACATGGTGAGTAAACACAAAGATTCA
GAAGAATCTGCAACTTCTTCAGAATCAACTGAGAAGAAAAGCCAAGATGA
TTAAAATTAAAGTAATATTCTATCATAATTTATTTTAGACATTTTAATGA
TTTTATTATGCCTAGTTTATTTATGCTCAAGTTTCAGATGTAGATAAGAA
CTTGTTTTACATTCACTCACCATCAAGATAAGGTTATCACTGTTTTTTAC
TAACATTCTGCCGGTTGGTAGGGTGAAGGTTTAAATTACAGGCTTGCGCC
AAAATGGACTTTGTTCGAGTCCTAAGCACTTCCAGGCAGGGAAGTATGGT
GAAATATGGTGATGGACTCTCTACCTTCACTTATTTTGTTAACTTTTACA
TTTTTTTGTTTGTTTATGATTTGATGTGTTTTTGCTTGTCCTCTCAGTCT
CATAAACAATTTAATTATCTGAATACCAGGCTCAATATTGAAATTCAATA
ATTTATATCAGCAAAATATTTAAAAAAACTTGATTCTTAGATTTCAGAAA
TGAATTTAAATGATTTTAGACTAGTAAGTAAATTCACTGGTGTAGTTTCT
TATAAAAACATGATTTGAT

Coding sequence (CDS) from alignment at scaffold_108:594066..597484-

>TCONS_00046314 ID=TCONS_00046314|Name=TCONS_00046314|organism=Clytia hemisphaerica|type=CDS|length=7110bp|location=Sequence derived from alignment at scaffold_108:594066..597484- (Clytia hemisphaerica)
ATTCTAATGTGCGCAATCATGAATGTTCCACATGTGGTATGAAATTTAAG
CGAGCACAGCATCTTCGAAGACATAATGAAGTACATAAACAAAACAAACA
GTTTACTTGTCTTTTATGTAATAAACAATTTTTACAAAAATCTGCCCTTG
AAGCTCATATCAATGTTCATACAGGAAATAAGCCATTTAAATGTAAGGTT
TGTTCTCATTCGTTTGCTGACAGGGCAACGTTAAGAAGACATACTTTAAC
GCATGCTAAAGAAAAACCTTACCAATGTTTGTTATGCAGTAAAGAGTTTT
GCCGGCAAAATTCTTTGAAACTTCACATGGTGAGTAAACACAAAGATTCA
GAAGAATCTGCAACTTCTTCAGAATCAACTGAGAAGAAAAGCCAAGATGA
TTAAAAACTGATGTAACACCAGCTAAACAACTCTCTCATACACTCTTATG
TAAGGATATAGAGAAGACAGAGCCAAACAAATCTTCACTGCAAAAAGTTG
TTTACAAATGTTCATTTTGTGCCATCGATTTTGAATCAAAAGAAAAATAT
TTAGAACATGAAAAATCACATGCAGATCGAAAGTGTATTATTTGCGGAAA
GGAATTCCAACGTCTGGGTCACTTGAAGGTGCACATGCATTCTCATAATA
ATATAAGACCCTTTGAATGCAAAGAGTGTGGAAAAGCCTTCCATGAGAAA
TGTTCGTTAAATAAACATCAGCAAGTTCGATTTGACCAGCAAAGATGCTT
GCCAGTATAACAACTTGGACAATATTGGCAGCAAAGAGATGTACAATTAT
AATCTGCTGCAACAACATAACGATGTTGTTTCTGACAGCCACCAATCAAG
CGACAAGCATCTGTTATCTCACACCCCAGTAGAATCAAATCTATTATCTA
TATCTAGTCACGAGATGTTGTCCCCTTCAAATTGTAGCTCACACCATGTA
GCAGCGCCATCTGACATGCTACACTCTCACATCACCAATAATGAGCTTGA
CATGATCCCATCGTTCTCTCAAGATTGTGATTATAGTTTAGATGAATCAA
ACTTGTTAAAGTCTAATGAAGAACAGAATCAAACACAAATGATTGGACAA
CAAAAGATACTACAAAGTTAAATGGATTAAAGTCACTTGGGAATCGGAAG
ATGATATTGCTTACTTCAACAATCTCATTGAAGCATTTTGGACAGAGTAC
ACTAAAGAATGTTTATTGCAGTCAGAAACTGAAAGCTGCTCAAATCTTGT
AAAACCTTCTGAATTTAATCGTTTTACTTTACTGAAGAAGTTCAATAAAA
TTTTTTTAGTGATAGATAATATAATGAATGTATCAAAAAATATGTCAACA
CCATTATTAATGTCACCAGAGTTATCAAATCCACCTGAAATTGAGAAGAT
ATTGGATACAACCCTTACAAAGATTCTAATGTGCGCAATCATGAATGTTC
CACATGTGGTATGAAATTTAAGCGAGCACAGCATCTTCGAAGACATAATG
AAGTACATAAACAAAACAAACAGTTTACTTGTCTTTTATGTAATAAACAA
TTTTTACAAAAATCTGCCCTTGAAGCTCATATCAATGTTCATACAGGAAA
TAAGCCATTTAAATGTAAGGTTTGTTCTCATTCGTTTGCTGACAGGGCAA
CGTTAAGAAGACATACTTTAACGCATGCTAAAGAAAAACCTTACCAATGT
TTGTTATGCAGTAAAGAGTTTTGCCGGCAAAATTCTTTGAAACTTCACAT
GGTGAGTAAACACAAAGATTCAGAAGAATCTGCAACTTCTTCAGAATCAA
CTGAGAAGAAAAGCCAAGATGATTAAAAACTGATGTAACACCAGCTAAAC
AACTCTCTCATACACTCTTATGTAAGGATATAGAGAAGACAGAGCCAAAC
AAATCTTCACTGCAAAAAGTTGTTTACAAATGTTCATTTTGTGCCATCGA
TTTTGAATCAAAAGAAAAATATTTAGAACATGAAAAATCACATGCAGATC
GAAAGTGTATTATTTGCGGAAAGGAATTCCAACGTCTGGGTCACTTGAAG
GTGCACATGCATTCTCATAATAATATAAGACCCTTTGAATGCAAAGAGTG
TGGAAAAGCCTTCCATGAGAAATGTTCGTTAAATAAACATCAGCAAGTTC
GATTTGACCAGCAAAGATGCTTGCCAGTATAACAACTTGGACAATATTGG
CAGCAAAGAGATGTACAATTATAATCTGCTGCAACAACATAACGATGTTG
TTTCTGACAGCCACCAATCAAGCGACAAGCATCTGTTATCTCACACCCCA
GTAGAATCAAATCTATTATCTATATCTAGTCACGAGATGTTGTCCCCTTC
AAATTGTAGCTCACACCATGTAGCAGCGCCATCTGACATGCTACACTCTC
ACATCACCAATAATGAGCTTGACATGATCCCATCGTTCTCTCAAGATTGT
GATTATAGTTTAGATGAATCAAACTTGTTAAAGTCTAATGAAGAACAGAA
TCAAACACAAATGATTGGACAACAAAAGATACTACAAAGTTAAATGGATT
AAAGTCACTTGGGAATCGGAAGATGATATTGCTTACTTCAACAATCTCAT
TGAAGCATTTTGGACAGAGTACACTAAAGAATGTTTATTGCAGTCAGAAA
CTGAAAGCTGCTCAAATCTTGTAAAACCTTCTGAATTTAATCGTTTTACT
TTACTGAAGAAGTTCAATAAAATTTTTTTAGTGATAGATAATATAATGAA
TGTATCAAAAAATATGTCAACACCATTATTAATGTCACCAGAGTTATCAA
ATCCACCTGAAATTGAGAAGATATTGGATACAACCCTTACAAAGATTCTA
ATGTGCGCAATCATGAATGTTCCACATGTGGTATGAAATTTAAGCGAGCA
CAGCATCTTCGAAGACATAATGAAGTACATAAACAAAACAAACAGTTTAC
TTGTCTTTTATGTAATAAACAATTTTTACAAAAATCTGCCCTTGAAGCTC
ATATCAATGTTCATACAGGAAATAAGCCATTTAAATGTAAGGTTTGTTCT
CATTCGTTTGCTGACAGGGCAACGTTAAGAAGACATACTTTAACGCATGC
TAAAGAAAAACCTTACCAATGTTTGTTATGCAGTAAAGAGTTTTGCCGGC
AAAATTCTTTGAAACTTCACATGGTGAGTAAACACAAAGATTCAGAAGAA
TCTGCAACTTCTTCAGAATCAACTGAGAAGAAAAGCCAAGATGATTAAAA
ACTGATGTAACACCAGCTAAACAACTCTCTCATACACTCTTATGTAAGGA
TATAGAGAAGACAGAGCCAAACAAATCTTCACTGCAAAAAGTTGTTTACA
AATGTTCATTTTGTGCCATCGATTTTGAATCAAAAGAAAAATATTTAGAA
CATGAAAAATCACATGCAGATCGAAAGTGTATTATTTGCGGAAAGGAATT
CCAACGTCTGGGTCACTTGAAGGTGCACATGCATTCTCATAATAATATAA
GACCCTTTGAATGCAAAGAGTGTGGAAAAGCCTTCCATGAGAAATGTTCG
TTAAATAAACATCAGCAAGTTCGATTTGACCAGCAAAGATGCTTGCCAGT
ATAACAACTTGGACAATATTGGCAGCAAAGAGATGTACAATTATAATCTG
CTGCAACAACATAACGATGTTGTTTCTGACAGCCACCAATCAAGCGACAA
GCATCTGTTATCTCACACCCCAGTAGAATCAAATCTATTATCTATATCTA
GTCACGAGATGTTGTCCCCTTCAAATTGTAGCTCACACCATGTAGCAGCG
CCATCTGACATGCTACACTCTCACATCACCAATAATGAGCTTGACATGAT
CCCATCGTTCTCTCAAGATTGTGATTATAGTTTAGATGAATCAAACTTGT
TAAAGTCTAATGAAGAACAGAATCAAACACAAATGATTGGACAACAAAAG
ATACTACAAAGTTAAATGGATTAAAGTCACTTGGGAATCGGAAGATGATA
TTGCTTACTTCAACAATCTCATTGAAGCATTTTGGACAGAGTACACTAAA
GAATGTTTATTGCAGTCAGAAACTGAAAGCTGCTCAAATCTTGTAAAACC
TTCTGAATTTAATCGTTTTACTTTACTGAAGAAGTTCAATAAAATTTTTT
TAGTGATAGATAATATAATGAATGTATCAAAAAATATGTCAACACCATTA
TTAATGTCACCAGAGTTATCAAATCCACCTGAAATTGAGAAGATATTGGA
TACAACCCTTACAAAGATTCTAATGTGCGCAATCATGAATGTTCCACATG
TGGTATGAAATTTAAGCGAGCACAGCATCTTCGAAGACATAATGAAGTAC
ATAAACAAAACAAACAGTTTACTTGTCTTTTATGTAATAAACAATTTTTA
CAAAAATCTGCCCTTGAAGCTCATATCAATGTTCATACAGGAAATAAGCC
ATTTAAATGTAAGGTTTGTTCTCATTCGTTTGCTGACAGGGCAACGTTAA
GAAGACATACTTTAACGCATGCTAAAGAAAAACCTTACCAATGTTTGTTA
TGCAGTAAAGAGTTTTGCCGGCAAAATTCTTTGAAACTTCACATGGTGAG
TAAACACAAAGATTCAGAAGAATCTGCAACTTCTTCAGAATCAACTGAGA
AGAAAAGCCAAGATGATTAAAAACTGATGTAACACCAGCTAAACAACTCT
CTCATACACTCTTATGTAAGGATATAGAGAAGACAGAGCCAAACAAATCT
TCACTGCAAAAAGTTGTTTACAAATGTTCATTTTGTGCCATCGATTTTGA
ATCAAAAGAAAAATATTTAGAACATGAAAAATCACATGCAGATCGAAAGT
GTATTATTTGCGGAAAGGAATTCCAACGTCTGGGTCACTTGAAGGTGCAC
ATGCATTCTCATAATAATATAAGACCCTTTGAATGCAAAGAGTGTGGAAA
AGCCTTCCATGAGAAATGTTCGTTAAATAAACATCAGCAAGTTCGATTTG
ACCAGCAAAGATGCTTGCCAGTATAACAACTTGGACAATATTGGCAGCAA
AGAGATGTACAATTATAATCTGCTGCAACAACATAACGATGTTGTTTCTG
ACAGCCACCAATCAAGCGACAAGCATCTGTTATCTCACACCCCAGTAGAA
TCAAATCTATTATCTATATCTAGTCACGAGATGTTGTCCCCTTCAAATTG
TAGCTCACACCATGTAGCAGCGCCATCTGACATGCTACACTCTCACATCA
CCAATAATGAGCTTGACATGATCCCATCGTTCTCTCAAGATTGTGATTAT
AGTTTAGATGAATCAAACTTGTTAAAGTCTAATGAAGAACAGAATCAAAC
ACAAATGATTGGACAACAAAAGATACTACAAAGTTAAATGGATTAAAGTC
ACTTGGGAATCGGAAGATGATATTGCTTACTTCAACAATCTCATTGAAGC
ATTTTGGACAGAGTACACTAAAGAATGTTTATTGCAGTCAGAAACTGAAA
GCTGCTCAAATCTTGTAAAACCTTCTGAATTTAATCGTTTTACTTTACTG
AAGAAGTTCAATAAAATTTTTTTAGTGATAGATAATATAATGAATGTATC
AAAAAATATGTCAACACCATTATTAATGTCACCAGAGTTATCAAATCCAC
CTGAAATTGAGAAGATATTGGATACAACCCTTACAAAGATTCTAATGTGC
GCAATCATGAATGTTCCACATGTGGTATGAAATTTAAGCGAGCACAGCAT
CTTCGAAGACATAATGAAGTACATAAACAAAACAAACAGTTTACTTGTCT
TTTATGTAATAAACAATTTTTACAAAAATCTGCCCTTGAAGCTCATATCA
ATGTTCATACAGGAAATAAGCCATTTAAATGTAAGGTTTGTTCTCATTCG
TTTGCTGACAGGGCAACGTTAAGAAGACATACTTTAACGCATGCTAAAGA
AAAACCTTACCAATGTTTGTTATGCAGTAAAGAGTTTTGCCGGCAAAATT
CTTTGAAACTTCACATGGTGAGTAAACACAAAGATTCAGAAGAATCTGCA
ACTTCTTCAGAATCAACTGAGAAGAAAAGCCAAGATGATTAAAAACTGAT
GTAACACCAGCTAAACAACTCTCTCATACACTCTTATGTAAGGATATAGA
GAAGACAGAGCCAAACAAATCTTCACTGCAAAAAGTTGTTTACAAATGTT
CATTTTGTGCCATCGATTTTGAATCAAAAGAAAAATATTTAGAACATGAA
AAATCACATGCAGATCGAAAGTGTATTATTTGCGGAAAGGAATTCCAACG
TCTGGGTCACTTGAAGGTGCACATGCATTCTCATAATAATATAAGACCCT
TTGAATGCAAAGAGTGTGGAAAAGCCTTCCATGAGAAATGTTCGTTAAAT
AAACATCAGCAAGTTCGATTTGACCAGCAAAGATGCTTGCCAGTATAACA
ACTTGGACAATATTGGCAGCAAAGAGATGTACAATTATAATCTGCTGCAA
CAACATAACGATGTTGTTTCTGACAGCCACCAATCAAGCGACAAGCATCT
GTTATCTCACACCCCAGTAGAATCAAATCTATTATCTATATCTAGTCACG
AGATGTTGTCCCCTTCAAATTGTAGCTCACACCATGTAGCAGCGCCATCT
GACATGCTACACTCTCACATCACCAATAATGAGCTTGACATGATCCCATC
GTTCTCTCAAGATTGTGATTATAGTTTAGATGAATCAAACTTGTTAAAGT
CTAATGAAGAACAGAATCAAACACAAATGATTGGACAACAAAAGATACTA
CAAAGTTAAATGGATTAAAGTCACTTGGGAATCGGAAGATGATATTGCTT
ACTTCAACAATCTCATTGAAGCATTTTGGACAGAGTACACTAAAGAATGT
TTATTGCAGTCAGAAACTGAAAGCTGCTCAAATCTTGTAAAACCTTCTGA
ATTTAATCGTTTTACTTTACTGAAGAAGTTCAATAAAATTTTTTTAGTGA
TAGATAATATAATGAATGTATCAAAAAATATGTCAACACCATTATTAATG
TCACCAGAGTTATCAAATCCACCTGAAATTGAGAAGATATTGGATACAAC
CCTTACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029567XLOC_029567Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046314-exon-scaffold_108-1575043694:597307..597484TCONS_00046314-exon-scaffold_108-1575043694:597307..597484Clytia hemisphaericaexon
TCONS_00046314-exon-scaffold_108-1575043694:596854..597003TCONS_00046314-exon-scaffold_108-1575043694:596854..597003Clytia hemisphaericaexon
TCONS_00046314-exon-scaffold_108-1575043694:596207..596573TCONS_00046314-exon-scaffold_108-1575043694:596207..596573Clytia hemisphaericaexon
TCONS_00046314-exon-scaffold_108-1575043694:595671..595994TCONS_00046314-exon-scaffold_108-1575043694:595671..595994Clytia hemisphaericaexon
TCONS_00046314-exon-scaffold_108-1575043694:594066..594984TCONS_00046314-exon-scaffold_108-1575043694:594066..594984Clytia hemisphaericaexon
TCONS_00046314-exon-scaffold_108-1510915933:597307..597484TCONS_00046314-exon-scaffold_108-1510915933:597307..597484Clytia hemisphaericaexon
TCONS_00046314-exon-scaffold_108-1510915933:596854..597003TCONS_00046314-exon-scaffold_108-1510915933:596854..597003Clytia hemisphaericaexon
TCONS_00046314-exon-scaffold_108-1510915933:596207..596573TCONS_00046314-exon-scaffold_108-1510915933:596207..596573Clytia hemisphaericaexon
TCONS_00046314-exon-scaffold_108-1510915933:595671..595994TCONS_00046314-exon-scaffold_108-1510915933:595671..595994Clytia hemisphaericaexon
TCONS_00046314-exon-scaffold_108-1510915933:594066..594984TCONS_00046314-exon-scaffold_108-1510915933:594066..594984Clytia hemisphaericaexon
TCONS_00046314-exon-scaffold_108-1491911889:597307..597484TCONS_00046314-exon-scaffold_108-1491911889:597307..597484Clytia hemisphaericaexon
TCONS_00046314-exon-scaffold_108-1491911889:596854..597003TCONS_00046314-exon-scaffold_108-1491911889:596854..597003Clytia hemisphaericaexon
TCONS_00046314-exon-scaffold_108-1491911889:596207..596573TCONS_00046314-exon-scaffold_108-1491911889:596207..596573Clytia hemisphaericaexon
TCONS_00046314-exon-scaffold_108-1491911889:595671..595994TCONS_00046314-exon-scaffold_108-1491911889:595671..595994Clytia hemisphaericaexon
TCONS_00046314-exon-scaffold_108-1491911889:594066..594984TCONS_00046314-exon-scaffold_108-1491911889:594066..594984Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046314-proteinTCONS_00046314-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_108supercontigscaffold_108:594066..597484 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.3319	2.11523	1.06151	0.609905	3.15284	2.66111	2.1005	2.93255	2.11778	1.922	2.47612	1.49227	1.73569	1.15002	1.77261	3.15507	2.94872	2.47755	1.95528	2.09749	2.6834	1.27991	3.85554	3.93134	0.862645	1.21642	3.12665	1.40681	3.13396	2.67392
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR019786Zinc_finger_PHD-type_CS
IPR016197Chromodomain-like
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00046314 vs. Swiss-Prot (Human)
Match: ZSC22 (Zinc finger and SCAN domain-containing protein 22 OS=Homo sapiens GN=ZSCAN22 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 2.296e-41
Identity = 80/203 (39.41%), Postives = 108/203 (53.20%), Query Frame = 2 
Query:  746 DIEKTEPNKSSLQKVVYKCSFCAIDFESKEKYLEHEKSHADR---KCIICGKEFQRLGHLKVHMHSHNNIRPFECKECGKAFHEKCSLNKHQQVHSNVRNHECSTCGMKFKRAQHLRRHNEVHKQNKQFTCLLCNKQFLQKSALEAHINVHTGNKPFKCKVCSHSFADRATLRRHTLTHAKEKPYQCLLCSKEFCRQNSLKLH 1345
            D   TEP  +   K   KC  C   F+S      H+K+H+ +    C  CGK F R  HL  H   H   +P ECKECGKAF     L +HQ++H+  + ++C  CG  F R+ HL +H  VH   + + C  C K F Q + L  H  +HTG KP+KC  C  +F+D + L RH   H+ EKPYQC +C K F + +SL  H
Sbjct:  252 DAYGTEPPYTYSGKRSSKCRECRKMFQSASALEAHQKTHSRKTPYACSECGKAFSRSTHLAQHQVVHTGAKPHECKECGKAFSRVTHLTQHQRIHTGEKPYKCGECGKTFSRSTHLTQHQRVHTGERPYECDACGKAFSQSTHLTQHQRIHTGEKPYKCDACGRAFSDCSALIRHLRIHSGEKPYQCKVCPKAFAQSSSLIEH 454

HSP 2 Score: 154.836 bits (390), Expect = 1.838e-40
Identity = 74/197 (37.56%), Postives = 105/197 (53.30%), Query Frame = 2 
Query:  767 NKSSLQKVVYKCSFCAIDFESKEKYLEHEKSHADRK---CIICGKEFQRLGHLKVHMHSHNNIRPFECKECGKAFHEKCSLNKHQQVHSNVRNHECSTCGMKFKRAQHLRRHNEVHKQNKQFTCLLCNKQFLQKSALEAHINVHTGNKPFKCKVCSHSFADRATLRRHTLTHAKEKPYQCLLCSKEFCRQNSLKLHM 1348
             K+  +K  Y CS C   F       +H+  H   K   C  CGK F R+ HL  H   H   +P++C ECGK F     L +HQ+VH+  R +EC  CG  F ++ HL +H  +H   K + C  C + F   SAL  H+ +H+G KP++CKVC  +FA  ++L  H   H  EKPY+C  C K F R ++L +H+
Sbjct:  287 QKTHSRKTPYACSECGKAFSRSTHLAQHQVVHTGAKPHECKECGKAFSRVTHLTQHQRIHTGEKPYKCGECGKTFSRSTHLTQHQRVHTGERPYECDACGKAFSQSTHLTQHQRIHTGEKPYKCDACGRAFSDCSALIRHLRIHSGEKPYQCKVCPKAFAQSSSLIEHQRIHTGEKPYKCSDCGKAFSRSSALMVHL 483

HSP 3 Score: 116.701 bits (291), Expect = 1.310e-27
Identity = 58/163 (35.58%), Postives = 81/163 (49.69%), Query Frame = 2 
Query:  794 YKCSFCAIDFESKEKYLEHEKSHADRK---CIICGKEFQRLGHLKVHMHSHNNIRPFECKECGKAFHEKCSLNKHQQVHSNVRNHECSTCGMKFKRAQHLRRHNEVHKQNKQFTCLLCNKQFLQKSALEAHINVHTGNKPFKCKVCSHSFADRATLRRHTLTH 1273
            ++C  C   F       +H++ H   K   C  CGK F R  HL  H   H   RP+EC  CGKAF +   L +HQ++H+  + ++C  CG  F     L RH  +H   K + C +C K F Q S+L  H  +HTG KP+KC  C  +F+  + L  H   H
Sbjct:  324 HECKECGKAFSRVTHLTQHQRIHTGEKPYKCGECGKTFSRSTHLTQHQRVHTGERPYECDACGKAFSQSTHLTQHQRIHTGEKPYKCDACGRAFSDCSALIRHLRIHSGEKPYQCKVCPKAFAQSSSLIEHQRIHTGEKPYKCSDCGKAFSRSSALMVHLRIH 486
The following BLAST results are available for this feature:
BLAST of TCONS_00046314 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZSC222.296e-4139.41Zinc finger and SCAN domain-containing protein 22 ... [more]
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