TCONS_00046322 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046322
Unique NameTCONS_00046322
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length485

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046322 ID=TCONS_00046322|Name=TCONS_00046322|organism=Clytia hemisphaerica|type=transcript|length=485bp
AGCTCGGGATACGTCGTTTGCCGTCAGAACACCAGTTGGgtcaattgatt
ttaaaattgagtCGACGAAAGACATCATTTGGCCTCCAGGTGGTCGTTTG
CCGTGTGGTGGAAGGTACAGAGCATAAATGTTGATTGGTTCGTTCTTGTC
CATTCGCAGGATGTGGCCAATGAACTTGAGTTGACGCATTCTGACAGTTG
ACATTAGCGGAGATGATGAGGTGGCTTCGTAGATTTGTTGATTGGAAACT
CTATCAAGTCTTTTAATTCCAAGGATAATTCTAAGGCATCTTGTTTGGAA
TGTGTTGATCTTTGAAGCCATTACTTTGGTGATAACCCATGTTTCAAAAT
TGTAGAGGAGGACGGATAAACAGGTGGTTTTGAATATTTCAATCTTCAGA
TGGATTGGGACGGAATCCGAACGCCAGATTTTTTCAAGCTTCCAGAACAC
AGACCAGCTAAGTCCGTGTCTTCTTTTGAAGTCAG
Run BLAST on NCBI

protein sequence of TCONS_00046322-protein

>TCONS_00046322-protein ID=TCONS_00046322-protein|Name=TCONS_00046322-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
DFKRRHGLSWSVFWKLEKIWRSDSVPIHLKIEIFKTTCLSVLLYNFETWV
ITKVMASKINTFQTRCLRIILGIKRLDRVSNQQIYEATSSSPLMSTVRMR
QLKFIGHILRMDKNEPINIYALYLPPHGKRPPGGQMMSFVDSILKSIDPT
GVLTANDVSRA
Run BLAST on NCBI

transcript from alignment at scaffold_108:75822..76306

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046322 ID=TCONS_00046322|Name=TCONS_00046322|organism=Clytia hemisphaerica|type=transcript|length=485bp|location=Sequence derived from alignment at scaffold_108:75822..76306 (Clytia hemisphaerica)
CTGACTTCAAAAGAAGACACGGACTTAGCTGGTCTGTGTTCTGGAAGCTT
GAAAAAATCTGGCGTTCGGATTCCGTCCCAATCCATCTGAAGATTGAAAT
ATTCAAAACCACCTGTTTATCCGTCCTCCTCTACAATTTTGAAACATGGG
TTATCACCAAAGTAATGGCTTCAAAGATCAACACATTCCAAACAAGATGC
CTTAGAATTATCCTTGGAATTAAAAGACTTGATAGAGTTTCCAATCAACA
AATCTACGAAGCCACCTCATCATCTCCGCTAATGTCAACTGTCAGAATGC
GTCAACTCAAGTTCATTGGCCACATCCTGCGAATGGACAAGAACGAACCA
ATCAACATTTATGCTCTGTACCTTCCACCACACGGCAAACGACCACCTGG
AGGCCAAATGATGTCTTTCGTCGactcaattttaaaatcaattgacCCAA
CTGGTGTTCTGACGGCAAACGACGTATCCCGAGCT

Coding sequence (CDS) from alignment at scaffold_108:75822..76306

>TCONS_00046322 ID=TCONS_00046322|Name=TCONS_00046322|organism=Clytia hemisphaerica|type=CDS|length=483bp|location=Sequence derived from alignment at scaffold_108:75822..76306 (Clytia hemisphaerica)
GACTTCAAAAGAAGACACGGACTTAGCTGGTCTGTGTTCTGGAAGCTTGA
AAAAATCTGGCGTTCGGATTCCGTCCCAATCCATCTGAAGATTGAAATAT
TCAAAACCACCTGTTTATCCGTCCTCCTCTACAATTTTGAAACATGGGTT
ATCACCAAAGTAATGGCTTCAAAGATCAACACATTCCAAACAAGATGCCT
TAGAATTATCCTTGGAATTAAAAGACTTGATAGAGTTTCCAATCAACAAA
TCTACGAAGCCACCTCATCATCTCCGCTAATGTCAACTGTCAGAATGCGT
CAACTCAAGTTCATTGGCCACATCCTGCGAATGGACAAGAACGAACCAAT
CAACATTTATGCTCTGTACCTTCCACCACACGGCAAACGACCACCTGGAG
GCCAAATGATGTCTTTCGTCGactcaattttaaaatcaattgacCCAACT
GGTGTTCTGACGGCAAACGACGTATCCCGAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029572XLOC_029572Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046322-exon-scaffold_108-1491911889:75822..76306TCONS_00046322-exon-scaffold_108-1491911889:75822..76306Clytia hemisphaericaexon
TCONS_00046322-exon-scaffold_108-1510915933:75822..76306TCONS_00046322-exon-scaffold_108-1510915933:75822..76306Clytia hemisphaericaexon
TCONS_00046322-exon-scaffold_108-1575043694:75822..76306TCONS_00046322-exon-scaffold_108-1575043694:75822..76306Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046322-proteinTCONS_00046322-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_108supercontigscaffold_108:75822..76306 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.642713	1.25349	1.30988	1.13912	0.173347	1.09585	0.661047	1.23773	0.433281	0.939206	1.30231	1.11291	1.19685	0.532691	0.291963	0.783302	0.482482	0.296717	0.546574	1.28689	0.497129	0.909308	0	0.133994	1.24209	0.615855	0.705029	0.188107	0.428017	0.290721
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046322 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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