TCONS_00046331 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046331
Unique NameTCONS_00046331
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length625

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046331 ID=TCONS_00046331|Name=TCONS_00046331|organism=Clytia hemisphaerica|type=transcript|length=625bp
AAATATTACAATCTAATATTTGAGtccaaaattattattttttagaaaaa
tgacgGTAGTATTTGTTTACAGTGCAAGTGTGTGCCCTTTCTgtaattta
aaaacttttatcagttttgtttgttatattttcaaaatttttagttgATT
TTTGTATTGCCCGGTTAGAAAATCTGTTACAAATTTCTTTACATGTACTT
gggggttgtttttttttaagaatgatTTTGAACTGTTTGCCTGTTTGTGA
gtctataatttttgaaaaacgtgTCGGcttattttggttattttttcgTT
TAGAGATTCTTCTAGGACAAGGCCAGCTCGTCTCTCTCAGGAAATATCAC
ATATGTAATGATAATGAAATGACATCATACATTTGCGTGGTTTTCTTGGG
AGACTGGcctttaaaattttgtatattGCACAtggtaaattattttttga
aattttattctttttagTTTATTCGATATAAAACATTCTGCATGATGTAT
ATAATGATATGGAttgaatattttaaactttcagtCAGTACATTCTTACT
TCTACCCCggccttgagcatgatgacatctCTGACagttagactatgcta
tagtctaagacgagtttcatctaag
Run BLAST on NCBI

transcript from alignment at scaffold_108:347663..348287

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046331 ID=TCONS_00046331|Name=TCONS_00046331|organism=Clytia hemisphaerica|type=transcript|length=625bp|location=Sequence derived from alignment at scaffold_108:347663..348287 (Clytia hemisphaerica)
cttagatgaaactcgtcttagactatagcatagtctaactGTCAGagatg
tcatcatgctcaaggccGGGGTAGAAGTAAGAATGTACTGactgaaagtt
taaaatattcaaTCCATATCATTATATACATCATGCAGAATGTTTTATAT
CGAATAAActaaaaagaataaaatttcaaaaaataatttaccaTGTGCaa
tatacaaaattttaaaggCCAGTCTCCCAAGAAAACCACGCAAATGTATG
ATGTCATTTCATTATCATTACATATGTGATATTTCCTGAGAGAGACGAGC
TGGCCTTGTCCTAGAAGAATCTCTAAAcgaaaaaataaccaaaataagCC
GAcacgtttttcaaaaattatagacTCACAAACAGGCAAACAGTTCAAAa
tcattcttaaaaaaaaacaacccccAAGTACATGTAAAGAAATTTGTAAC
AGATTTTCTAACCGGGCAATACAAAAATcaactaaaaattttgaaaatat
aacaaacaaaactgataaaagtttttaaattacAGAAAGGGCACACACTT
GCACTGTAAACAAATACTACcgtcatttttctaaaaaataataattttgg
aCTCAAATATTAGATTGTAATATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029581XLOC_029581Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046331-exon-scaffold_108-1491911889:347663..348287TCONS_00046331-exon-scaffold_108-1491911889:347663..348287Clytia hemisphaericaexon
TCONS_00046331-exon-scaffold_108-1510915933:347663..348287TCONS_00046331-exon-scaffold_108-1510915933:347663..348287Clytia hemisphaericaexon
TCONS_00046331-exon-scaffold_108-1575043694:347663..348287TCONS_00046331-exon-scaffold_108-1575043694:347663..348287Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_108supercontigscaffold_108:347663..348287 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.193124	0.188941	0.115009	0	0	0.102648	0	0	0.0864031	0.113596	0.0571522	0.0589033	0	0	0	0	0	0.0948668	0.329826	0.120658	0	0	17.4888	12.9116	0	0.127822	0.0948388	0.289978
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046331 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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