TCONS_00046332 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046332
Unique NameTCONS_00046332
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046332 ID=TCONS_00046332|Name=TCONS_00046332|organism=Clytia hemisphaerica|type=transcript|length=428bp
GAAGATGAACTCTGTTTCGAATATCTCGTTATGAATCTCGTCGATATATG
GGAAAAGAACATTTATCCCTCTCAATGGGACCTGGGTAAACTTGTGATCC
TACCCAAAAAAGGAGACCTCTCAAAACCAGGAAATTATAGGGGTATAATG
CTCCTTGAAACCGCGTATAAAGTCTTAGCAATATTGATACACAGCAGATT
ACAACCATTTATAGAAAGTCTTGACCACGAATCACAATGTGGTTTTCGAC
AAGGTAGAGGATGCATGGATGCCGCTTTCTCTGTCAAACTTGCCCTTAAA
AAACGTAGAGAACATAACCTTGAAACTTGGGTACTTTTTCTCGACCTCGT
TAAAGCGTTCGACAGAGTACCAAGGTCGTTATTATGGGAAGTATTGTCAA
AATTTGGACTACCAGAGAAATTGATCTN
Run BLAST on NCBI

protein sequence of TCONS_00046332-protein

>TCONS_00046332-protein ID=TCONS_00046332-protein|Name=TCONS_00046332-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
EDELCFEYLVMNLVDIWEKNIYPSQWDLGKLVILPKKGDLSKPGNYRGIM
LLETAYKVLAILIHSRLQPFIESLDHESQCGFRQGRGCMDAAFSVKLALK
KRREHNLETWVLFLDLVKAFDRVPRSLLWEVLSKFGLPEKLI
Run BLAST on NCBI

transcript from alignment at scaffold_108:446800..447227

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046332 ID=TCONS_00046332|Name=TCONS_00046332|organism=Clytia hemisphaerica|type=transcript|length=428bp|location=Sequence derived from alignment at scaffold_108:446800..447227 (Clytia hemisphaerica)
NAGATCAATTTCTCTGGTAGTCCAAATTTTGACAATACTTCCCATAATAA
CGACCTTGGTACTCTGTCGAACGCTTTAACGAGGTCGAGAAAAAGTACCC
AAGTTTCAAGGTTATGTTCTCTACGTTTTTTAAGGGCAAGTTTGACAGAG
AAAGCGGCATCCATGCATCCTCTACCTTGTCGAAAACCACATTGTGATTC
GTGGTCAAGACTTTCTATAAATGGTTGTAATCTGCTGTGTATCAATATTG
CTAAGACTTTATACGCGGTTTCAAGGAGCATTATACCCCTATAATTTCCT
GGTTTTGAGAGGTCTCCTTTTTTGGGTAGGATCACAAGTTTACCCAGGTC
CCATTGAGAGGGATAAATGTTCTTTTCCCATATATCGACGAGATTCATAA
CGAGATATTCGAAACAGAGTTCATCTTC

Coding sequence (CDS) from alignment at scaffold_108:446800..447227

>TCONS_00046332 ID=TCONS_00046332|Name=TCONS_00046332|organism=Clytia hemisphaerica|type=CDS|length=426bp|location=Sequence derived from alignment at scaffold_108:446800..447227 (Clytia hemisphaerica)
GATCAATTTCTCTGGTAGTCCAAATTTTGACAATACTTCCCATAATAACG
ACCTTGGTACTCTGTCGAACGCTTTAACGAGGTCGAGAAAAAGTACCCAA
GTTTCAAGGTTATGTTCTCTACGTTTTTTAAGGGCAAGTTTGACAGAGAA
AGCGGCATCCATGCATCCTCTACCTTGTCGAAAACCACATTGTGATTCGT
GGTCAAGACTTTCTATAAATGGTTGTAATCTGCTGTGTATCAATATTGCT
AAGACTTTATACGCGGTTTCAAGGAGCATTATACCCCTATAATTTCCTGG
TTTTGAGAGGTCTCCTTTTTTGGGTAGGATCACAAGTTTACCCAGGTCCC
ATTGAGAGGGATAAATGTTCTTTTCCCATATATCGACGAGATTCATAACG
AGATATTCGAAACAGAGTTCATCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029582XLOC_029582Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046332-exon-scaffold_108-1491911889:446800..447227TCONS_00046332-exon-scaffold_108-1491911889:446800..447227Clytia hemisphaericaexon
TCONS_00046332-exon-scaffold_108-1510915933:446800..447227TCONS_00046332-exon-scaffold_108-1510915933:446800..447227Clytia hemisphaericaexon
TCONS_00046332-exon-scaffold_108-1575043694:446800..447227TCONS_00046332-exon-scaffold_108-1575043694:446800..447227Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046332-proteinTCONS_00046332-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_108supercontigscaffold_108:446800..447227 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.485996	0	1.50498	1.04653	1.04632	1.3424	1.04138	2.89664	2.14174	2.5635	1.31301	1.32591	2.50328	4.84792	3.94412	2.0769	5.30682	4.41937	3.55861	6.24066	4.70357	4.71975	3.56394	4.26717	6.53108	4.95111	0.591748	0.711198	5.44374	4.91636
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046332 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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