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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046341 ID=TCONS_00046341|Name=TCONS_00046341|organism=Clytia hemisphaerica|type=transcript|length=432bp
TAGTACATGGTTCGTTGGATTCTCATCTGACGGATGCAAACTTAATAGAT
ATGGTTTTGTTTGGAGGAAGGAAATCTCAATATTTGTTATTGTTATTACT
GAGTATTGTACGCATAAATGCTTCAAAATGCTGGCAAAAGattccaGAGA
ACAATCACGGCATACAGCCAACCACTATAGTGAATGAAGCCGAAGATCTA
CAGCCaaacaatttactttttttcattcCAATTCTATCCAATGAATGGAT
CGTACAATTACATTTCAAACTTCTTGCCGAGCATGCTGGTGGAAGCAATT
GGTGTAATATAATACATGTCACAAAGGGTCAAAACAATATTGCTTACGGA
GATCGAACACCAGCCATCTTCTTTAATAaggcAACTTCGCTGCTAAATAT
AGGATCGGCAGTGAATGGCAGCAAAAATTACG Run BLAST on NCBI transcript from alignment at scaffold_109:1483..4268+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046341 ID=TCONS_00046341|Name=TCONS_00046341|organism=Clytia hemisphaerica|type=transcript|length=2786bp|location=Sequence derived from alignment at scaffold_109:1483..4268+ (Clytia hemisphaerica)
TAGTACATGGTTCGTTGGATTCTCATCTGACGGATGCAAACTTAATAGAT
ATGGTTTTGTTTGGAGGAAGGAAATCTCAATATTTGTTATTGTTATTACT
GAGTATTGTACGCATAAATGCTTCAAAATGCTGGCAAAAGGTAAGGAAAG
TGTTTTAGAGTTTGAATAAAGACTCTATCTAGCCCAGATGGCTTTTTGAT
TGGGTGACGGCGATTAAGTAGCTCGGTATATGAGAGACCTCACCTCAGTT
TTTAGCTTTTGCGCCTGCGGACTGAAAAAAAGATTGTAGTTGTTTTGCGA
ATATAAAAGATTCATGTGGCAATGTTTATGTTTGAAAAGAGGGTATTGCT
AATCCTTTTTTGATGttcctttttcgttttttatcaTACCTGGGGAGGGA
ATTCCTTCGATTCCAAAACGTGCAgtgctttttcaaaaatggaaaaactt
tCGGTTTTCGAGGATCCTGTTCGCACTTCCTCATCAtctgccaaccctag
tacccccctggTTTATTTATCTGATAAAGATTTGCATATTCACTCGATTC
AACTATGTTCGAAATTTGATTTTAGTccataataaaataattttttcctt
caaaaacacaaaaaaagtgGAGTGAAGaagttcaattttattttttttca
gattccaGAGAACAATCACGGCATACAGCCAACCACTATAGTGAATGAAG
GTAAGTATTTTTTATATCAATACGTCCTTTTTCTAACGAAGACCCTCAAA
AAACCGGAGTTTGCCTACTGTCTGTTACGTAGTGAAACATAGTGGTCAAA
ATCCCGCTTTTTCGGGTGCTTCCGCTAGAAAACATGAAATTAACCAagtg
atttttgtaaaatcaagGCTCAATTATAAAGCAAAGTGTCAATAATGCCA
AAAAAATGTACAAGCACGAATTCATACGCAAttctttttgaaggaaaaac
gaaaaaaatcttcaaagatTTCGACAATATCTCGTTTTTgagaagaaaag
tttgaagcttgaaacttcaaaaaacattgtattttcaactttttaaaaat
ttaggcAACCCTGTGTGATACAATTTCTCACAATTTAATGAGTCAGTTAT
TTTCGGAACCTAacccttaaccctattattatcaggctttttcggatttt
gtattctcaggGGGgaggggtgttttccaccagccttgcataacttttga
tctagaaaaggtatggacttgaaatttggcacaaatgttctctaccataa
aaggagttcatagaaaaaattttggttgatgacgtcatcataaaggtgat
ggcgtcatcacaaagtttcacaattatcgctgaccaatgaaaaagtacta
ttcaataaaatagcaattaaatttgaacgaatggagatttttcaattatg
ttttgaatttctaaaagtcaaaaagaatatctttaacatatttgccggtt
ttaaatatactaataaaatcaaggtttaaaatccatgcagaaaatgagta
aattttttcaaaaatcaatgacgtcatttatgatgacgtcagcagttttt
gaaaattcTTAAAATATTTTTTAAAATTTATCATTGATACCTAAAACCTG
TCAAAATTTGAAGTCaattggatgcctagatcaaaagttatgctaaattt
aagattttgggattttacagggttttagctggattttatgatatgcctgc
acaaaaaagtcataaaacctgatctggtcggtgtataattgtaaaattta
gtaTACATACAGCTactaggattatattaaaagtcaaaaactttcagagt
gttaaaaaaaaaattttcactgagctattagcaaaagagtgccagcctgg
tggaaaacaccccctgataaaaatagggttaaaaccCAAAAGAAGTACTT
ATTCGTTCAAAATCAGACAAAATTCCACGTCCCAAATTTGAGGATATAAa
acctgaccacttgatttaaaagggcATGAACCGAATGTTTTTAGAAATAg
tataaaaaaatactttttcaatGGTACTAAAACCATTGTCTAACTCTAGT
CTAATTGTCTAATTCTAGCTTTcagatttaataaaaaaatgttggaaatt
ttcaaattgttcaaaaaatgtTGCGTGCATAACTAGTGACACGTCCCTTT
AAATCCCATTTTCCTGAATAGCTCTCCCCCAGAGGACACCActgttgtaa
tttttttaatatctttttttcagCCGAAGATCTACAGCCaaacaatttac
tttttttcattcCAATTCTATCCAATGAATGGATCGTACAATTACATTTC
AAACTTCTTGCCGAGCATGCTGGTGGAAGCAATTGGTGTAATATAATACA
TGTCACAAAGGGTCAAAACAATATTGCTTACGGAGATCGAACACCAGCCA
TCTTCTTTAATAaggtgaaaaagtttttgaaaaaaatctttatcGACCCT
TCAAcgccaaaataaaatttctgcCTCATTGAAATCTAATTCATTTTCAC
AATTATCCAAAAACATctgtaatttttgtttgaagcaCTAAATTCTAGGC
AGAAAAAGAACCTTCTGCAATAtgccaaaattaattcaaaaatactttta
aaaaaacttaaaattaatatttctttGATTCCTTCCTTCTTCTCACCGAA
TTAGTTCACGCCATTTAACTTATCTGCTTTTTACTTTCAGACGGactgta
ttttttatttaatcatatttaaaaaaatctttaggcAACTTCGCTGCTAA
ATATAGGATCGGCAGTGAATGGCAGCAAAAATTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046341-exon-scaffold_109-1491911889:1483..1622 | TCONS_00046341-exon-scaffold_109-1491911889:1483..1622 | Clytia hemisphaerica | exon |
| TCONS_00046341-exon-scaffold_109-1510915933:1483..1622 | TCONS_00046341-exon-scaffold_109-1510915933:1483..1622 | Clytia hemisphaerica | exon |
| TCONS_00046341-exon-scaffold_109-1575043694:1483..1622 | TCONS_00046341-exon-scaffold_109-1575043694:1483..1622 | Clytia hemisphaerica | exon |
| TCONS_00046341-exon-scaffold_109-1491911889:2134..2182 | TCONS_00046341-exon-scaffold_109-1491911889:2134..2182 | Clytia hemisphaerica | exon |
| TCONS_00046341-exon-scaffold_109-1510915933:2134..2182 | TCONS_00046341-exon-scaffold_109-1510915933:2134..2182 | Clytia hemisphaerica | exon |
| TCONS_00046341-exon-scaffold_109-1575043694:2134..2182 | TCONS_00046341-exon-scaffold_109-1575043694:2134..2182 | Clytia hemisphaerica | exon |
| TCONS_00046341-exon-scaffold_109-1491911889:3706..3896 | TCONS_00046341-exon-scaffold_109-1491911889:3706..3896 | Clytia hemisphaerica | exon |
| TCONS_00046341-exon-scaffold_109-1510915933:3706..3896 | TCONS_00046341-exon-scaffold_109-1510915933:3706..3896 | Clytia hemisphaerica | exon |
| TCONS_00046341-exon-scaffold_109-1575043694:3706..3896 | TCONS_00046341-exon-scaffold_109-1575043694:3706..3896 | Clytia hemisphaerica | exon |
| TCONS_00046341-exon-scaffold_109-1491911889:4217..4268 | TCONS_00046341-exon-scaffold_109-1491911889:4217..4268 | Clytia hemisphaerica | exon |
| TCONS_00046341-exon-scaffold_109-1510915933:4217..4268 | TCONS_00046341-exon-scaffold_109-1510915933:4217..4268 | Clytia hemisphaerica | exon |
| TCONS_00046341-exon-scaffold_109-1575043694:4217..4268 | TCONS_00046341-exon-scaffold_109-1575043694:4217..4268 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_109 | supercontig | scaffold_109:1483..4268 + |
Blast
The following BLAST results are available for this feature:
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