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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046348 ID=TCONS_00046348|Name=TCONS_00046348|organism=Clytia hemisphaerica|type=transcript|length=4867bp
GTTGATGTTATTTTATGATCACCCATTTGCGACGATGttctgatgttttt
tttttaaggctAATGCAAACCATGCAAATAGCAAATAAATGGACTGATCC
ATGACCAGCACATGACCAGAGTGCCAGACGCCAGAGGAGTCAGGACCACG
CAGGGCCAGGAGGGTAACTGTATATTGCCAAAATTTAAGTGTTTAGTAAA
GAGATTGGGAAAAAATGGAGATTGATGAGATaaagattgagtttaatgat
gTACATGAATCGCCCATGGAACATGAAGTTCCTGCTCAAGCCCTCATGAC
ATTGCACGATTCTGTACAAAACATGCCAAGTAAACAAAAGTCAGCTCTAC
AGGAAGCAGTAGCTGATGCATCACCAATCAAACGGCCACGTCTTGAGGGT
TTACAGGACAATCAGCCATGGAACCAATATTCGCCCTTGAAACGCTACGA
ACCTAGATCTCTTTCCAAAGATTTCTCACAAGAACAATTGGAGAGCATGA
ATAAAAACTACACCTCAATTAAAAACACTTTGAAGCAATCATCCGGACGA
AGATGGGCGTATTACGAGTTCTTTTATTCCAACATTGATAGAGCTTTACT
ACTGGGATGTAATGATTTTGAGATCTGTCTAAAGCAGATGTTCCAAGATC
TGAAAACAAGGATGTTGACTAGACGCCAGTGGTCCAATATTCGTCGACTG
ATGGGCAAACCCAGGAGGTATTCAGCTGCATTTTTGAAAGAAGAACGTgc
aattttagaagaaaaacgaaagaaaattcGATATCTGCATCAACTGAAAG
GGTTTGAGGTGACAGATATGACACAATTCAAAGacTTACCAGAAGAAGTG
CCCACCCCAATGGTTATAGGAACTAAGGTGACAGCGAAAGTTCCAGATTA
TCTTCAAAAAGATGGATTGAATCTTTTCACTGGCAGCATTGATGCTGTAG
ATAATGTAAACAATACCTTTAGAATCATCTTTGACAGAGAGGGTATTGGA
TCGCATTCAATCCCAGATACTGACGTCTCCAGTGAAGAATATGAATCAAT
GAATTTACAATTATTCGTCGTCAAAGAAAGACCAAAAGTAGCAGAGTCGA
CAAATCAAAAAGTGGACAAGAGCGATGCCAATTGTTCTCCAACACGATTA
CGTCTGAAGGAAGAACTTCGAAAGGGAAGTGGAGGGACGTTCGGTGGGTT
TCCTGTTCACTTCTTGTTGCAACTGACCACCCTCTCAAAAGCTATCGCCC
TCAAGAAAGAATACGTGAAAAAACTGAAAGAGATGAACAGTAAAGTTGAA
TTAGCTCAACCTTTTGGTTATATTAAGAAGGACTTTCAACGGGATTATGC
ATTCGTTGTTCTGGAATTGGATAAAATCAATACAGAAATGAATGATATTT
TCGATAATATTCAGCATTATATACACACTGATGCGCCACACATGGGTGCT
CTTGATCAATCTTTAAACGTTAGAAATGAGTGCAATGAGAAAGCAATGGA
CTTGATTGAACAATCTCAGTGTATTTTGCACGATGAACATATGTTAACTC
TCACAAAGCAGTTCACCTCACTAATGCTACAAATTAATCACGTTGCTGAA
AGTGAGGAGCCGTGTTCTGCGAAATTATCTTTACTGGACTCAGCTGTGGA
AGAGATTAAAGAGACCTTGCATCCTTCAAATAAGAAACTGTTTGAGGACC
AAGTGGAGATTAGTATTGCTTTCTTGAAGAATAATTTGCAGAACGAGAAG
AGTAGTTTGTCTGCGTTTTCACATAAGAAACAACAGGAGAATTTGTTACC
GTTGGTAGATAATCTGGATGACAATTTATCTTcgaatgatgaaaatgata
atgATGACGATGACGATGATTTGCTTCTTGAAGAAGAAGAGGAGGAAGAA
ATAAAAGAGGAAGATTCTGATTTGAGTGAGTGAGTGACTGGATGACTGAT
CTGGGCTGATCATAAGTTTTCATTTCAATATTGGGAGCTAAAGAGTCTTT
ACAATAATTTAAGGCATTTCAAATCTTTTTCGATTGTGTCTATTTTAAGA
TCATCTCCCAGTTTTCTGCTTTTTTTCTTGACCTTTTTGGTCGAAAGTAC
AGtagactctctctaattcgaacttctattattcgaatctttctaaaaTT
CGATTTAAAACACTGGCCCCCTTAGCTAGAAAGTAGTGTAAATGCCCTCT
ATAATTTGAACCTTTTTATGATTCGACAAAAAGCCCTCgtctcttgaaga
tcgaattatagagagccGCCTCTCGTACTATGTAATAAGGATGATGCTGA
GTGAATGATGGAATTAATTTTCATGTTCATTTTGTGATGTTTTCAGTTTG
ACTACAAGTTCAATTGTCAAGGTTCTCCCTTGACATTTAAATTGGCTTTT
CAAATAATACTGCACtgcatttttatgaaatttcttaGAAATGATTTTAA
TCCATTTTTATATCTATAGGGTAGAGATTTCTACTTTTTATCCTTCATTT
TTTAAGGCATATATTATCACTTTTGTACATACACATATAGGACATGATAA
TGACatgaaacaattctttttttaaatcgatTCAATTATTCCCGGAGTTT
TGTTTGAGAAATCTTTCAATGTTGAagctttcatttttcattttttaaag
gtAAAAATCTATACATGTAAAACTTAAAAATAGAATATATTGAAAACTCG
AATTCAAAAAGATGTTTGGCAGAGTATTGATGAGAAAACCAACAAACTTG
ACACGAGAATTAAAACACATTGGAAACGTTGGTTCCATCAGATGCTCCTC
ATCGAAATATCCAATCAGTCGATACCCGATCGTTGACGATGGAGATGTGG
AAAACATGCCAGAGGATATCAAACAACGAATGCTGGATGTCAAAGAAAAG
AGTACCTTCTTACCAAACGTGTTCAAAACATTGGCGCATCGTCCAGACGA
ATTTCGATCATTCTTCAATTATTATGACGTATTGATGGAGGAAACATCTC
TCCTTACCAAGGCTGAAAAAGAAATGATCGTTGTAGCTACAAGCACCATT
AATAACTGTAATTACTGTCTAGCATCGCATGGTGCTCTATTGAGAATCTA
CTCCAAGAATCCACTCCTTGGTGACCAAGTCGCTGTCAATCACCAACATG
CTGATATCACAGACCGTCAAAAGAGAATGTTAGATTTTGCCGTTTTGGTA
GCTAAGGGACAACCCATATCTGATGAAGAGTTTAAAAACATGAGGGAATC
TGGTTTTTCGGATCAAGAGATTTGGGATATTGGAGCCATTGCAGCTTTCT
TTGCTTTGAGTAATCGGATGGCACACTTGACCAATATGAGACCAAATGAT
GAGTTCTATTCGCTTGGACGCATCcccaaagataaaaagtgaacTTACTT
ATAAAGTGGTGGTCGTCCTATAGAGCAttatttaaattgaaaataaaatg
atgaTATTGATGTTTTCACTTTATGTCTTTCATTTGAAAAGGTTATGTAT
GCTGGAGAAAATTGATTTAATAGGGAAAATGATTTATTTGTTCAACTAAT
TATTTGGTCAATTCTTGGGATGCTGAATCTTTCAACATGGACGTGTTTTg
ataatgaaattgaaaaattgtttttttgtgattttggtgTGATTACCTCT
TTCTTCAATCCTTTATGGCTTGACATTGATTAAATTATATTCAGCATGGT
GCTATTCTGACGTGTATGTTGACCGGATTTTTTCAGTTTACTCTGACTTT
GTGATTGGGTTGTTTTTGGGCTATGCTCGGGGACATTTTTATCTGTCCAA
ACCAACCAGCAAATTTCGAatagtgaaataaaaaaaaaatttgtaaataa
aatagTGTTTCTGCATTCAATTTAATTACTGATTAGATTAGTCATACGTT
TTCAAGTGTGTAAAAGCATTTCTAGTCATTTATGGTTCCACGCCAATTTG
TTTTGGTAAAATTCGCTGTCTCATTATCACTGCACTTGCTTTTGAGTCTG
GGATTGACGTCTACACACATTATTATATCTAATTCATAAGTACCTTTATA
AGCATAAAACCAAGTCCACTGACTCGTGTTTGGTGGTCATTTTTCATTAC
TCTGACTTTTTTCAAAGCACCTAAAAGCTGAAAAACCATCAAGCTTAGGA
CAAAGCTTATCTGATTAGGATCCATTTTTTAATTATCActaaatgaattt
tttgaatatCATTACAATTTTTTGTATTGATTTTGAGACCTTTGAAATTG
CTTATAAAGAGATGAGAGACAATCTAACAAAGTTTGGCTATACAAATAGG
TGATTCTTATTTTGTAAATTGACGCGTCTGTGTTCTGTTGTGTCATTTTG
TTGACAcattatttatttactttcatTCGTAAAACAGTCACTTGTTGAGC
TCGAAAACCGACACCCCCTTTTTCTCTTGATAAATTGTTAACTTTCATTG
ACACTTTCCCTTCCatgtacaaaaacaaaaaaaaatgaattttattaaaA
GGACACTCGACGAACTTGATCATTTTTGTTGTCAACTTGGTGCATCGTAT
TTTTGGTAGAATTTATATCgtgttatttgattttttcagtCTCTATTTTG
TAGTTATCACAAATTTTGTTAGTGGACCCTGCTTTATATGTATCTCGATC
GATTTTATGGTTTCTGAGTCAAAGGAAATCTAAATTGTATATCTATGGAT
AAAGGTTTTCTGGTTATTCTTTATAAAGActtctttaaaacttttttttc
atttcatagtAGATTCAGAACCATTTTAAGATTATAAAATCATATGCATC
CATCTAAGTTGAAACTATTCAGTGCGAATTTTTGTTCATCTTTTAATTAT
AATTATGTCCCCCATTA Run BLAST on NCBI transcript from alignment at scaffold_109:70636..82919+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046348 ID=TCONS_00046348|Name=TCONS_00046348|organism=Clytia hemisphaerica|type=transcript|length=12284bp|location=Sequence derived from alignment at scaffold_109:70636..82919+ (Clytia hemisphaerica)
GTTGATGTTATTTTATGATCACCCATTTGCGACGATGttctgatgttttt
tttttaaggctAATGCAAACCATGCAAATAGCAAATAAATGGACTGATCC
ATGACCAGCACATGACCAGAGTGCCAGACGCCAGAGGAGTCAGGACCACG
CAGGGCCAGGAGGGTAACTGTATATTGCCAAAATTTAAGGTAAACTTTGA
ATTTTTAGCAGTCCAGCTTTCTGTGCGATTTTGAGCTTCGCTGCGAAACG
CAACCAGAAAGAGAAAACAAGACCCCTCCTGTTTTAACCAGTCAAGTACC
AGACAGtactaattgataaatttgatTATCCAAACAAAGTAATCGAtaag
gccaggcccaattgattgtttggttcgtgtcctagaAGCTTTGATAAATG
GGTTGGTccgtcagtcggtcggtcggtagctaAAGGCTAAAGATggaaca
ttttttcattttcccaccaaaaacctccatttttgaaattcctcaaGCAA
TCGCGCAATTCTAGAATCCAACCACGACTGTAAAGAAATAGCCTAAAGCC
CGGATCCTCAAAGGCCAAGgcacgcgctgcgatcgcaaGATAACTTCTAG
TTGAAGATTAAGACGTTTGCGGCGTGTGCTTTAAAGGAATATAGCTGTAG
ACTCTCTCTGCTTTTTAGGTGTTGATATTTGTTTTTACNGAAAAGGTCTA
TACAGCTGTAGACTCTCTCTGCTTTTTAGGTGcttgatatttgtttttaa
gtaccCCCGTGGGTTACACCGGGACATTTTCTGTGCACAAAGTGGATGTT
GTTTATAGAAGAATCAAAGCAGTCAGttataaaaaaagaacagcAGAGAT
AGTAGTTATCATGTGAAAAGGaggtagaatttttttgatttttcctactc
aaagtgaaacactttttctcaaaaatttacaGTTGGTTggaggacacgaa
ccaaactgTCAAttgcagtgctgcaaataacggccggtgaccggtaatta
ccggtcattttTAAGCTAATATGTGTGTTTTTTCCCGAGAAATTTTGATG
GTTTCATTGTTAGTGATTTCTGATTGAGTAATCACCGTCCAAATTGAAat
tccttatttgcagcactgaatTGGGCCTGCCCTAATGATCAAAGTAATCG
AACGACTATTTATcgtttatcaaattttgagtaccaaaatttcaaaaaca
ttgtgAGTCTTCGATCACTTTCTTAATAAATTATCGGAGAGTAtatatag
acctaactcttcatacaaaactTACcagaaacgcatatttggactttgta
ccctatgctgcacacaagcacttaagccaaagtcctgcaaaggcgggaca
aaaatcagaagtttgcaaaaaacgcCACGTacaagatctttcaaattcag
tatgcgaatagagcagtaaaaaatacaacttttcctatttttcttatttt
ttgcaaaagttctaggaacgAAAATAAAGGGATATATCCGCTGATGATCC
GCGGTGCCAACTATTGTAACAATAACCAtttgagtactttgattgttatt
gattacttccgataacttcgataaccaattgattacttcgataaccAATA
CCGATACCTTGGAaaaaggcgctgtggtatagtggtcattgaccttggtt
actgcacaggcgactgaggttcgattcccactcgcagcggttcacttggc
aagtgaatgaacccatgccatgtgaggggaattgggtagtcagtccaagg
tgctggcggggcgctcattgaaagcgtctatagttgcgaaaataggcctc
aaagcctcctgcaactcaaccaaatagaaaaatagaaataggaaaaacca
aaaacagTGACCTAAAACCAAACCACAAAAAGAAGCCATAAGAATCACCT
TCAGTACTTCCCCGTTTTGAATGTGCTTGCTCTGGGTTTCCTTAAATAAA
CCAAATCACGCATTTTGATTGGTCGGAGAGAGCAAAAGTGGTTTTCCCAC
GTAAATCGCGTGTTTTTATTGTACAAAATAAACTATTTTATTGGACGAGA
TGAACTCAGTTTCAGATTCCATCGCTTTGCTACAGGAAGCATATCCGACA
CaatcgaaggtattcaatatgatcgaaagTGATTGAACATACAATCaaac
aaatcgaaaatggtCAAAGAAAATGCCATGATTAAGAGTTGAGGGATTAT
TCAATCACCGATAGAATCAATAAGTGGTCACTGATCaccttcgattatta
tcgatcattattgattacttcgatcacaatcgaatgttcgattagtaccg
tctggttttaagtttgtttacatatgactcgattttgctagtCTCCATCT
GtccatttccaacaaaaagcagttatgaaaacaaaagtaaacgAGTCATA
GTGTGCCTACTAAttgcgagggtgtcaaataccacgtgtttcTGCGTGTT
TAATAGTAAAATTAACgttagaaatttttgtttatttactttttttaact
tttctgctgattcagcattctgCTGATTCAGTTGATAAAGTATAGATAAA
CGAATAAATAAAATAGCaaagtagcgagttgataaagcaacagataaaca
aatgaagaaaGTAGCAAAGAAGCGAGTAGAAAAAGCAATAGAttaacgaa
tgaagaaagtcaGGAGGTATTTTTTAACTTCGCATTTTTGagttagaaaa
tcttttttggtcgctaaatctaaaattcacttcGCAACTaaagcacttaa
gctaaagtcccgcaaaagtgggacaaaaatcagtttcttgaagtttgcaa
aaaaacgccacatagaagacacaacttttgttgacgtcaaaccaaaggtt
ttatttttccgtgaactttgaacccttctaacattttttctatgtatgct
aaagcatTCCGGattttactaaaagaaagcctgtgatcttagctttcaag
cggtatataacactgtggacacgggctagacggcaaatttgTCTGCTACG
GGAATGAAAAAAGTTGCAACTATTGatgaacaaatgtttctggaaatgga
ggaactcatagttgaaggctgaaactctgtatgtttatcagaaaaaggtt
gaggaattcaaaaatcgctagttctagttctttcatcttcatgtagtttt
ttttagcatgggaatgtcccaaaaatcagggttttctcctttttctttac
ttataactttttgttcctccatttccagaggcctaccaccttttttggct
catttcaaccttttccaagctattttcttcaaaaacaaaaataaaacaat
gcaatgtcttcttttctcaaaaaaaggatatatcttttgttatcttgata
aatatactaaatattttacaaatatttttatataataatattctaacacc
atcaaagaattccaTAGCGCCAGCCTGGATTTAGGTCCCatgcaaaaatt
aggtcccccctgagttttaagtccccccaaagaaTTATGAATCTTTTGTT
AGCCCCAAGgacttttgactttttagacactttcaaaaaattgatccagt
aaaaaagggttttccaatTTAAATTGTGTTCAGTTCTAAGTTTTTAAGAT
CAAATATTTTGCACACTATTTATAAATATATTGCGCCGCAgactaaaaat
tttcagattcatgagcttcaatttgagtaattgaaccaactattaagctg
aattattttagcccccacgtaagtgatgagattttagttCCCCCCAAGTA
AATAGATCCCCCTAAAAAAGTGGCGTAGTTCCAGGCAtctccttttttgg
gaaagaTTTGGGGTGTAACCCCTCCCCCAACCAGCagggggggctgacgc
tatgaattctccctccaaatttcaggtctctagctacactagaaaaagag
atatgcaaaattaaagaagTATGACTGGAAAAAAGTGACTATCTATCTCA
GGTAGGTCTTGGGATCCCATAGGGTTCCCTTTAGGGCAGACCTGCCAATT
TGAGATGTTCATTTTGtgtgagataaaaatttcgcAGCGAAATCTGAAAT
TTTAGCCTGGTTTATTTGATTGTAGGGAATCGAAAGTCAGgaaatttttt
cccaaaatgggtatattcaaaaatttagaatattggggaaacttttttcc
aaaaatgagaaaattggGAGAACATTTTTTCcctaaaattagaaaattct
tttaattctgaaaatcagaaaatcggggtaactttttcaaaagttggaaa
aatcaaggaaaatttttctcaaaaatgcttgAGAAatccaacttttcaaa
aattgcacAAGGCAATGTGGAAATGTGTGAGTCTCAAAACCAATGCATGA
GAGTTGCTGGCACCTCTGTTAGGGGCACTTGTAGAGCTGGGAGCTATTTT
AATTAAGGTCTATAAATTCCATGCTATCAGTTTATATTTGTGAATGACCA
AAATCTATCCTGTCTCAGTGGCGCAAGCAGTTGGGCGCTGGGTTTAGGTA
GGAGACCTATTTCACTGATACaggaaaatctcaaaaaaatacATAGAGGA
CAgttaaaaacaaagttttcacGAAAATTCTTTACAAAAGTCctcatttt
cttctttgtcaaattttttcattgcaatttttaaattttcatattcaagG
ATAGTTGCTCTACCAGAAAATGTATATCATACCAaagttttgtgggctac
atcaggcagaaatttGTATTGCGTATGtgtcaaatatgaaaaattggtca
gagccctttaaaagaaccatttgaTAATCAATCGATTCAATCTATAGATA
ATCAAGCCTTCCTTTAAAATCCTGATAATAGATTACCAATTCTTATTGat
tattggaattttttattgatCTATTGGTcatcaattgaaaaaaaattgtt
gatttgtCAAGTAATAGGGTCTGCTAAAATGTGACCGCTGTGATATCTCT
TAAAGAaacattgaaaagctttttctaGAGGGTGCTAGCAATATGCAGAA
TTAAGTGTTTTCATTTCAAGAAATGACTCGCAAGTCAGAAGCTTGTATCT
CAGGAAAGATTAAACATTGTTAAAACAGGctaaaaaattaaagatttttg
aaatgtttcctCTTGGTTCGGTTCAAGTTGATAATTTgttataattttat
ttcttacaAAGTGTTTAGTAAAGAGATTGGGAAAAAATGGAGATTGATGA
GATaaagattgagtttaatgatgTACATGAATCGCCCATGGAACATGAAG
TTCCTGCTCAAGCCCTCATGACATTGCACGATTCTGTACAAAACATGCCA
AGTAAACAAAAGTCAGCTCTACAGGTAAGATCTTCCCTGCTTTTACAATT
GTCTTGAATTATCTTGTTTACACAAACAAAAGTAAAGGATAAGTCCTTTT
AATTTATATTTCTCAATTTTATATTGTTTGCCAATAATGAAAAATACTAT
TGTCGTTTCAGAGGATTTTAAGCTAGGCTTGGTGTTAAAATCTCAGACAG
TACTAAAAgggttttcaagtttttttttgcatgataCCCCAATAGCACCA
CCCCATCATTTTAGAGAAGTAGTTTTAGTATGTTGTGTATTTTTGAACTT
ACAAAATGGTCCTATTAATTAAACAGTGTTTGTTTGTTCGTTCATTCGTT
AATTACCAGCACTTCTCGGGACTGACTGataaattttttatgatttcttG
AGGTTTTCTTATTAGTTTTTCCTGACTTTCTGTTTATTTAATATAATGTT
TCTGTTGATCAGCCAGGTGGGTCTATAAAATTAAAGTATCacttattttt
tattaatttagcAAACATTATAGGCATAtgattaaaatgtaaaaataact
ttttttaaaggagaaaattattttcgaaaaatttagggaaaattctaaaa
aagatttaaagaagATAAAGTCACCTTTACTTTATTTAGTCCTCCATGTT
TATAAaaggattttaatttttttggtatacCATAACAATTTCACTTTAAC
GTCacgatgtctgagattttaatatgctaaaatttccagggttaAAAGAT
TGATTGACCATGTCTGGCATTTCCAAGTTCTGAAGGCTGGATTTGTATTG
CAACATAAGTCAGGTTTTGGTAACTTATTTATTGTAACTGTCTTATCCAA
GTCCACTGTTTTATAATTACTTGAATTTCTTAGGAAGCAGTAGCTGATGC
ATCACCAATCAAACGGCCACGTCTTGAGGGTTTACAGGACAATCAGCCAT
GGAACCAATATTCGCCCTTGAAACGCTACGAACCTAGATCTCTTTCCAAA
GATTTCTCACAAGAACAATTGGAGAGCATGAATAAAAACTACACCTCAAT
TAAAAACACTTTGAAGCAATCATCCGGACGAANTTTTTTATTAATTTAGC
AAACATTATAGGCATAtgattaaaatgtaaaaataactttttttaaagga
gaaaattattttcgaaaaatttagggaaaattctaaaaaagatttaaaga
agATAAAGTCACCTTTACTTTATTTAGTCCTCCATGTTTATAAaaggatt
ttaatttttttggtatacCATAACAATTTCACTTTAACGTCacgatgtct
gagattttaatatgctaaaatttccagggttaAAAGATTGATTGACCATG
TCTGGCATTTCCAAGTTCTGAAGGCTGGATTTGTATTGCAACATAAGTCA
GGTTTTGGTAACTTATTTATTGTAACTGTCTTATCCAAGTCCACTGTTTT
ATAATTACTTGAATTTCTTAGGAAGCAGTAGCTGATGCATCACCAATCAA
ACGGCCACGTCTTGAGGGTTTACAGGACAATCAGCCATGGAACCAATATT
CGCCCTTGAAACGCTACGAACCTAGATCTCTTTCCAAAGATTTCTCACAA
GAACAATTGGAGAGCATGAATAAAAACTACACCTCAATTAAAAACACTTT
GAAGCAATCATCCGGACGAAGATGGGCGTATTACGAGTTCTTTTATTCCA
ACATTGATAGAGCTTTACTACTGGGATGTAATGATTTTGAGATCTGTCTA
AAGCAGATGTTCCAAGATCTGAAAACAAGGATGTTGACTAGACGCCAGTG
GTCCAATATTCGTCGACTGATGGGCAAACCCAGGAGGTATTCAGCTGCAT
TTTTGAAAGAAGAACGTgcaattttagaagaaaaacgaaagaaaattcGA
TATCTGCATCAACTGAAAGGGTTTGAGGTGACAGATATGACACAATTCAA
AGGTATCTAGATTTTACACATATCTTTATGCCTGATAGTTCTATCATATA
GTTTCTATCAAATGGTGCATAGGTTGTGACCCTGCTTATCAGTTAAAAAA
GACTGTGAGATAATGCACCCTTTCCCCTGGAATGACCGTGGAGTCAGTTC
CAAAGTTTGAGACCTTTAGAGTATTCAGAAATCTATCatttaattttatt
attattagacTTACCAGAAGAAGTGCCCACCCCAATGGTTATAGGAACTA
AGGTGACAGCGAAAGTTCCAGATTATCTTCAAAAAGATGGATTGAATCTT
TTCACTGGCAGCATTGATGCTGTAGATAATGTAAACAATACCTTTAGAAT
CATCTTTGACAGGTACGGCCcaatttatttttcgttttcgtttgCTTCAG
ACAAATATTTTGTTCCAGGAATCCTTATATTCTGGCTTCTGATTTTAACA
AACCGAAGGAATTTTTCAGGTACCATtactaatttaaaaaaaattgtttt
tgtttatattatcGTTGTTTAGAGAGGGTATTGGATCGCATTCAATCCCA
GATACTGACGTCTCCAGTGAAGAATATGAATCAATGAATTTACAATTATT
CGTCGTCAAAGAAAGACCAAAAGTAGCAGGTACATAGAATACACTCATCT
TTAGGCAAACTTAATATTTTCATCTTATAAATTCTTTATAGCAATTTTTC
CACAGGAACTGTTTGTAGTTCCTTGATTTGCATTTAAGAATTCAACTTTA
TCAGCATTCATTTTATTGGCTTATATAATGATGATGATCCAGGTCCATAG
ACACGGAGTTAAAGTTGCTTGTTCGAATCCCTTGAAAGCTGAACTGGCTG
GCTCTGGGCCCCCAAAAAAATAATCTAAGTACTATATTACTATGTTTCGA
AGCCTCTATTGTATAAGAGAATCCATGTAGATGAAAatagagaagttttt
ttttatgaattatttttcttgaTTGTATTTGTAGAGTCGACAAATCAAAA
AGTGGACAAGAGCGATGCCAATTGTTCTCCAACACGATTACGTCTGAAGG
AAGAACTTCGAAAGGGAAGTGGAGGGACGTTCGGTGGGTTTCCTGTTCAC
TTCTTGTTGCAACTGACCACCCTCTCAAAAGCTATCGCCCTCAAGAAAGA
ATACGTGAAAAAACTGAAAGAGATGAACAGTAAAGTTGAATTAGCTCAAC
CTTTTGGTTATATTAAGAAGGACTTTCAACGGGATTATGCATTCGTTGTT
CTGGAATTGGATAAAATCAATACAGAAATGAATGATATTTTCGATAATAT
TCAGCATTATATACACACTGATGCGCCACACATGGGTGCTCTTGATCAAT
CTTTAAACGTTAGAAATGAGTGCAATGAGAAAGCAATGGACTTGATTGAA
CAATCTCAGTGTATTTTGCACGATGAACATATGTTAACTCTCACAAAGCA
GTTCACCTCACTAATGCTACAAATTAATCACGTTGCTGAAAGTGAGGAGC
CGTGTTCTGCGAAATTATCTTTACTGGACTCAGCTGTGGAAGAGATTAAA
GAGACCTTGCATCCTTCAAATAAGAAACTGTTTGAGGACCAAGTGGAGAT
TAGTATTGCTTTCTTGAAGAATAATTTGCAGAACGAGAAGAGTAGTTTGT
CTGCGTTTTCACATAAGAAACAACAGGAGAATTTGTTACCGTTGGTAGAT
AATCTGGATGACAATTTATCTTcgaatgatgaaaatgataatgATGACGA
TGACGATGATTTGCTTCTTGAAGAAGAAGAGGAGGAAGAAATAAAAGAGG
AAGATTCTGATTTGAGTGAGTGAGTGACTGGATGACTGATCTGGGCTGAT
CATAAGTTTTCATTTCAATATTGGGAGCTAAAGAGTCTTTACAATAATTT
AAGGCATTTCAAATCTTTTTCGATTGTGTCTATTTTAAGATCATCTCCCA
GTTTTCTGCTTTTTTTCTTGACCTTTTTGGTCGAAAGTACAGtagactct
ctctaattcgaacttctattattcgaatctttctaaaaTTCGATTTAAAA
CACTGGCCCCCTTAGCTAGAAAGTAGTGTAAATGCCCTCTATAATTTGAA
CCTTTTTATGATTCGACAAAAAGCCCTCgtctcttgaagatcgaattata
gagagccGCCTCTCGTACTATGTAATAAGGATGATGCTGAGTGAATGATG
GAATTAATTTTCATGTTCATTTTGTGATGTTTTCAGTTTGACTACAAGTT
CAATTGTCAAGGTTCTCCCTTGACATTTAAATTGGCTTTTCAAATAATAC
TGCACtgcatttttatgaaatttcttaGAAATGATTTTAATCCATTTTTA
TATCTATAGGGTAGAGATTTCTACTTTTTATCCTTCATTTTTTAAGGCAT
ATATTATCACTTTTGTACATACACATATAGGACATGATAATGACatgaaa
caattctttttttaaatcgatTCAATTATTCCCGGAGTTTTGTTTGAGAA
ATCTTTCAATGTTGAagctttcatttttcattttttaaaggtAAAAATCT
ATACATGTAAAACTTAAAAATAGAATATATTGAAAACTCGAATTCAAAAA
GATGTTTGGCAGAGTATTGATGAGAAAACCAACAAACTTGACACGAGAAT
TAAAACACATTGGAAACGTTGGTTCCATCAGATGCTCCTCATCGAAATAT
CCAATCAGTCGATACCCGATCGTTGACGATGGAGATGTGGAAAACATGCC
AGAGGATATCAAACAACGAATGCTGGATGTCAAAGAAAAGGTATTGTGAA
CTTTTTTATCCGTTCAACTCGTTTATATATCTACCCATTCATTCAGAGCA
ATGATTGAGAATGGTTGTTTTGGGGTGTTTTTCCCACCTCACAATCTGTT
CTTCAATTTATGGTTTGATGAGAAAGTTCCAAACTTGCTAATAATAAATC
ATTCATCTTATTTTCATTAAGCTTTTTGATTTGTTGGCTTTCTAAATTAA
TTTATGATTCTTCAGACAAACTTTTATTTTGACGATGTCCTGTCTTAAAA
AAACACCTATTTTATAGAGTACCTTCTTACCAAACGTGTTCAAAACATTG
GCGCATCGTCCAGACGAATTTCGATCATTCTTCAATTATTATGACGTATT
GATGGAGGAAACATCTCTCCTTACCAAGGCTGAAAAAGAAATGATCGTTG
TAGCTACAAGCACCATTAATAACTGTAATTACTGTCTAGCATCGCATGGT
GCTCTATTGAGAATCTACTCCAAGAATCCACTCCTTGGTGACCAAGTCGC
TGTCAATCACCAACATGCTGATATCACAGACCGTCAAAAGAGAATGTTAG
ATTTTGCCGTTTTGGTAGCTAAGGGACAACCCATATCTGATGAAGAGTTT
AAAAACATGAGGGAATCTGGTTTTTCGGATCAAGAGATTTGGGATATTGG
AGCCATTGCAGCTTTCTTTGCTTTGAGTAATCGGATGGCACACTTGACCA
ATATGAGACCAAATGATGAGTTCTATTCGCTTGGACGCATCcccaaagat
aaaaagtgaacTTACTTATAAAGTGGTGGTCGTCCTATAGAGCAttattt
aaattgaaaataaaatgatgaTATTGATGTTTTCACTTTATGTCTTTCAT
TTGAAAAGGTTATGTATGCTGGAGAAAATTGATTTAATAGGGAAAATGAT
TTATTTGTTCAACTAATTATTTGGTCAATTCTTGGGATGCTGAATCTTTC
AACATGGACGTGTTTTgataatgaaattgaaaaattgtttttttgtgatt
ttggtgTGATTACCTCTTTCTTCAATCCTTTATGGCTTGACATTGATTAA
ATTATATTCAGCATGGTGCTATTCTGACGTGTATGTTGACCGGATTTTTT
CAGTTTACTCTGACTTTGTGATTGGGTTGTTTTTGGGCTATGCTCGGGGA
CATTTTTATCTGTCCAAACCAACCAGCAAATTTCGAatagtgaaataaaa
aaaaaatttgtaaataaaatagTGTTTCTGCATTCAATTTAATTACTGAT
TAGATTAGTCATACGTTTTCAAGTGTGTAAAAGCATTTCTAGTCATTTAT
GGTTCCACGCCAATTTGTTTTGGTAAAATTCGCTGTCTCATTATCACTGC
ACTTGCTTTTGAGTCTGGGATTGACGTCTACACACATTATTATATCTAAT
TCATAAGTACCTTTATAAGCATAAAACCAAGTCCACTGACTCGTGTTTGG
TGGTCATTTTTCATTACTCTGACTTTTTTCAAAGCACCTAAAAGCTGAAA
AACCATCAAGCTTAGGACAAAGCTTATCTGATTAGGATCCATTTTTTAAT
TATCActaaatgaattttttgaatatCATTACAATTTTTTGTATTGATTT
TGAGACCTTTGAAATTGCTTATAAAGAGATGAGAGACAATCTAACAAAGT
TTGGCTATACAAATAGGTGATTCTTATTTTGTAAATTGACGCGTCTGTGT
TCTGTTGTGTCATTTTGTTGACAcattatttatttactttcatTCGTAAA
ACAGTCACTTGTTGAGCTCGAAAACCGACACCCCCTTTTTCTCTTGATAA
ATTGTTAACTTTCATTGACACTTTCCCTTCCatgtacaaaaacaaaaaaa
aatgaattttattaaaAGGACACTCGACGAACTTGATCATTTTTGTTGTC
AACTTGGTGCATCGTATTTTTGGTAGAATTTATATCgtgttatttgattt
tttcagtCTCTATTTTGTAGTTATCACAAATTTTGTTAGTGGACCCTGCT
TTATATGTATCTCGATCGATTTTATGGTTTCTGAGTCAAAGGAAATCTAA
ATTGTATATCTATGGATAAAGGTTTTCTGGTTATTCTTTATAAAGActtc
tttaaaacttttttttcatttcatagtAGATTCAGAACCATTTTAAGATT
ATAAAATCATATGCATCCATCTAAGTTGAAACTATTCAGTGCGAATTTTT
GTTCATCTTTTAATTATAATTATGTCCCCCATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046348-exon-scaffold_109-1491911889:70636..70824 | TCONS_00046348-exon-scaffold_109-1491911889:70636..70824 | Clytia hemisphaerica | exon |
| TCONS_00046348-exon-scaffold_109-1510915933:70636..70824 | TCONS_00046348-exon-scaffold_109-1510915933:70636..70824 | Clytia hemisphaerica | exon |
| TCONS_00046348-exon-scaffold_109-1575043694:70636..70824 | TCONS_00046348-exon-scaffold_109-1575043694:70636..70824 | Clytia hemisphaerica | exon |
| TCONS_00046348-exon-scaffold_109-1491911889:75797..75959 | TCONS_00046348-exon-scaffold_109-1491911889:75797..75959 | Clytia hemisphaerica | exon |
| TCONS_00046348-exon-scaffold_109-1510915933:75797..75959 | TCONS_00046348-exon-scaffold_109-1510915933:75797..75959 | Clytia hemisphaerica | exon |
| TCONS_00046348-exon-scaffold_109-1575043694:75797..75959 | TCONS_00046348-exon-scaffold_109-1575043694:75797..75959 | Clytia hemisphaerica | exon |
| TCONS_00046348-exon-scaffold_109-1491911889:77407..77887 | TCONS_00046348-exon-scaffold_109-1491911889:77407..77887 | Clytia hemisphaerica | exon |
| TCONS_00046348-exon-scaffold_109-1510915933:77407..77887 | TCONS_00046348-exon-scaffold_109-1510915933:77407..77887 | Clytia hemisphaerica | exon |
| TCONS_00046348-exon-scaffold_109-1575043694:77407..77887 | TCONS_00046348-exon-scaffold_109-1575043694:77407..77887 | Clytia hemisphaerica | exon |
| TCONS_00046348-exon-scaffold_109-1491911889:78094..78247 | TCONS_00046348-exon-scaffold_109-1491911889:78094..78247 | Clytia hemisphaerica | exon |
| TCONS_00046348-exon-scaffold_109-1510915933:78094..78247 | TCONS_00046348-exon-scaffold_109-1510915933:78094..78247 | Clytia hemisphaerica | exon |
| TCONS_00046348-exon-scaffold_109-1575043694:78094..78247 | TCONS_00046348-exon-scaffold_109-1575043694:78094..78247 | Clytia hemisphaerica | exon |
| TCONS_00046348-exon-scaffold_109-1491911889:78408..78514 | TCONS_00046348-exon-scaffold_109-1491911889:78408..78514 | Clytia hemisphaerica | exon |
| TCONS_00046348-exon-scaffold_109-1510915933:78408..78514 | TCONS_00046348-exon-scaffold_109-1510915933:78408..78514 | Clytia hemisphaerica | exon |
| TCONS_00046348-exon-scaffold_109-1575043694:78408..78514 | TCONS_00046348-exon-scaffold_109-1575043694:78408..78514 | Clytia hemisphaerica | exon |
| TCONS_00046348-exon-scaffold_109-1491911889:78870..80675 | TCONS_00046348-exon-scaffold_109-1491911889:78870..80675 | Clytia hemisphaerica | exon |
| TCONS_00046348-exon-scaffold_109-1510915933:78870..80675 | TCONS_00046348-exon-scaffold_109-1510915933:78870..80675 | Clytia hemisphaerica | exon |
| TCONS_00046348-exon-scaffold_109-1575043694:78870..80675 | TCONS_00046348-exon-scaffold_109-1575043694:78870..80675 | Clytia hemisphaerica | exon |
| TCONS_00046348-exon-scaffold_109-1491911889:80953..82919 | TCONS_00046348-exon-scaffold_109-1491911889:80953..82919 | Clytia hemisphaerica | exon |
| TCONS_00046348-exon-scaffold_109-1510915933:80953..82919 | TCONS_00046348-exon-scaffold_109-1510915933:80953..82919 | Clytia hemisphaerica | exon |
| TCONS_00046348-exon-scaffold_109-1575043694:80953..82919 | TCONS_00046348-exon-scaffold_109-1575043694:80953..82919 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_109 | supercontig | scaffold_109:70636..82919 + |
Blast
BLAST of TCONS_00046348 vs. Swiss-Prot (Human)
Match: LIN9 (Protein lin-9 homolog OS=Homo sapiens GN=LIN9 PE=1 SV=1) HSP 1 Score: 329.717 bits (844), Expect = 1.985e-98 Identity = 192/486 (39.51%), Postives = 294/486 (60.49%), Query Frame = 2
Query: 380 KRPRLEGLQDNQPWNQYSPLKRYE-----PRSLSKDFSQEQLESMNKNYTSIKNTLKQSSGRRWAYYEFFYSNIDRALLLGCNDFEICLKQMFQDLKTRMLTRRQWSNIRRLMGKPRRYSAAFLKEERAILEEKRKKIRYLHQLKGFEVTDMTQFKDLPEEVPTPMVIGTKVTAKVPDYLQKDGLNLFTGSIDAVDNVNNTFRIIFDREGIGSHSIPDTDV-SSEEYESMNLQLFVVKERPKVAESTNQKVDKSDANCSPT--------RLRLKEELRKGSGGTFGGFPVHFLLQLTTLSKAIALKKEYVKKLKEMNSKVELAQPFGY-IKKDFQRDYAFVVLELDKINTEMNDIFDNIQHYIHTDAPHMG--ALDQSLNVRNECNEKAMDLIEQS-----QCILHDEHMLTLTKQFTSLMLQINHVAESEEPCSAKLSLLDSAVEEIKETLHPSNKKLFEDQVEISIAFLKNNLQNEKSSLSAFS 1771
KR RL +D++ N SP KR + P+ + S ++ K ++N LK +W YE+FYSNID+ L G NDF +CLK+ F +LKTR LTR +W IRRLMGKPRR S+AF +EER+ L++KR+KIR L Q K V D++QFKDLP+E+P P+VIGTKVTA++ DG LFTG IDAVD +N T+R+ FDR G+G+H+IPD +V S+E +E+M + F K+RP T ++ + SP + + ++ T GGFPV FL+Q+T LSK + +KKE++KKL+EMN++ E + + I +FQR YA +VLEL+++N ++N + +Q Y + AP G DQ ++R C E+A +++ + Q + +E++ L + T+++LQI +AE + S + L ++ +IK T+ SN F++ VEI +A +++ L ++ +L AF+
Sbjct: 59 KRSRLFSDEDDRQINTRSP-KRNQRVAMVPQKFTATMSTPDKKASQKIGFRLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLKTRKLTRVEWGKIRRLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRK---VADVSQFKDLPDEIPLPLVIGTKVTARLRGV--HDG--LFTGQIDAVDTLNATYRVTFDRTGLGTHTIPDYEVLSNEPHETMPIAAFGQKQRPSRFFMTPPRLHYTPPLQSPIIDNDPLLGQSPWRSKISGSDTETLGGFPVEFLIQVTRLSKILMIKKEHIKKLREMNTEAEKLKSYSMPISIEFQRRYATIVLELEQLNKDLNKVLHKVQQYCYELAPDQGLQPADQPTDMRRRCEEEAQEIVRHANSSTGQPCVENENLTDLISRLTAILLQIKCLAEGGDLNSFEFKSLTDSLNDIKSTIDASNISCFQNNVEIHVAHIQSGL-SQMGNLHAFA 535
The following BLAST results are available for this feature:
|
