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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046351 ID=TCONS_00046351|Name=TCONS_00046351|organism=Clytia hemisphaerica|type=transcript|length=452bp
TGATCCATGACCAGCACATGACCAGAGTGCCAGACGCCAGAGGAGTCAGG
ACCACGCAGGGCCAGGAGGGTAACTGTATATTGCCAAAATTTAAGTGTTT
AGTAAAGAGATTGGGAAAAAATGGAGATTGATGAGATaaagattgagttt
aatgatgTACATGAATCGCCCATGGAACATGAAGTTCCTGCTCAAGCCCT
CATGACATTGCACGATTCTGTACAAAACATGCCAAGTAAACAAAAGTCAG
CTCTACAGGAAGCAGTAGCTGATGCATCACCAATCAAACGGCCACGTCTT
GAGGGTTTACAGGACAATCAGCCATGGAACCAATATTCGCCCTTGAAACG
CTACGAACCTAGATCTCTTTCCAAAGATTTCTCACAAGAACAATTGGAGA
GCATGAATAAAAACTACACCTCAATTAAAAACACTTTGAAGCAATCATCC
GG Run BLAST on NCBI transcript from alignment at scaffold_109:70730..77012+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046351 ID=TCONS_00046351|Name=TCONS_00046351|organism=Clytia hemisphaerica|type=transcript|length=6283bp|location=Sequence derived from alignment at scaffold_109:70730..77012+ (Clytia hemisphaerica)
TGATCCATGACCAGCACATGACCAGAGTGCCAGACGCCAGAGGAGTCAGG
ACCACGCAGGGCCAGGAGGGTAACTGTATATTGCCAAAATTTAAGGTAAA
CTTTGAATTTTTAGCAGTCCAGCTTTCTGTGCGATTTTGAGCTTCGCTGC
GAAACGCAACCAGAAAGAGAAAACAAGACCCCTCCTGTTTTAACCAGTCA
AGTACCAGACAGtactaattgataaatttgatTATCCAAACAAAGTAATC
GAtaaggccaggcccaattgattgtttggttcgtgtcctagaAGCTTTGA
TAAATGGGTTGGTccgtcagtcggtcggtcggtagctaAAGGCTAAAGAT
ggaacattttttcattttcccaccaaaaacctccatttttgaaattcctc
aaGCAATCGCGCAATTCTAGAATCCAACCACGACTGTAAAGAAATAGCCT
AAAGCCCGGATCCTCAAAGGCCAAGgcacgcgctgcgatcgcaaGATAAC
TTCTAGTTGAAGATTAAGACGTTTGCGGCGTGTGCTTTAAAGGAATATAG
CTGTAGACTCTCTCTGCTTTTTAGGTGTTGATATTTGTTTTTACNGAAAA
GGTCTATACAGCTGTAGACTCTCTCTGCTTTTTAGGTGcttgatatttgt
ttttaagtaccCCCGTGGGTTACACCGGGACATTTTCTGTGCACAAAGTG
GATGTTGTTTATAGAAGAATCAAAGCAGTCAGttataaaaaaagaacagc
AGAGATAGTAGTTATCATGTGAAAAGGaggtagaatttttttgatttttc
ctactcaaagtgaaacactttttctcaaaaatttacaGTTGGTTggagga
cacgaaccaaactgTCAAttgcagtgctgcaaataacggccggtgaccgg
taattaccggtcattttTAAGCTAATATGTGTGTTTTTTCCCGAGAAATT
TTGATGGTTTCATTGTTAGTGATTTCTGATTGAGTAATCACCGTCCAAAT
TGAAattccttatttgcagcactgaatTGGGCCTGCCCTAATGATCAAAG
TAATCGAACGACTATTTATcgtttatcaaattttgagtaccaaaatttca
aaaacattgtgAGTCTTCGATCACTTTCTTAATAAATTATCGGAGAGTAt
atatagacctaactcttcatacaaaactTACcagaaacgcatatttggac
tttgtaccctatgctgcacacaagcacttaagccaaagtcctgcaaaggc
gggacaaaaatcagaagtttgcaaaaaacgcCACGTacaagatctttcaa
attcagtatgcgaatagagcagtaaaaaatacaacttttcctatttttct
tattttttgcaaaagttctaggaacgAAAATAAAGGGATATATCCGCTGA
TGATCCGCGGTGCCAACTATTGTAACAATAACCAtttgagtactttgatt
gttattgattacttccgataacttcgataaccaattgattacttcgataa
ccAATACCGATACCTTGGAaaaaggcgctgtggtatagtggtcattgacc
ttggttactgcacaggcgactgaggttcgattcccactcgcagcggttca
cttggcaagtgaatgaacccatgccatgtgaggggaattgggtagtcagt
ccaaggtgctggcggggcgctcattgaaagcgtctatagttgcgaaaata
ggcctcaaagcctcctgcaactcaaccaaatagaaaaatagaaataggaa
aaaccaaaaacagTGACCTAAAACCAAACCACAAAAAGAAGCCATAAGAA
TCACCTTCAGTACTTCCCCGTTTTGAATGTGCTTGCTCTGGGTTTCCTTA
AATAAACCAAATCACGCATTTTGATTGGTCGGAGAGAGCAAAAGTGGTTT
TCCCACGTAAATCGCGTGTTTTTATTGTACAAAATAAACTATTTTATTGG
ACGAGATGAACTCAGTTTCAGATTCCATCGCTTTGCTACAGGAAGCATAT
CCGACACaatcgaaggtattcaatatgatcgaaagTGATTGAACATACAA
TCaaacaaatcgaaaatggtCAAAGAAAATGCCATGATTAAGAGTTGAGG
GATTATTCAATCACCGATAGAATCAATAAGTGGTCACTGATCaccttcga
ttattatcgatcattattgattacttcgatcacaatcgaatgttcgatta
gtaccgtctggttttaagtttgtttacatatgactcgattttgctagtCT
CCATCTGtccatttccaacaaaaagcagttatgaaaacaaaagtaaacgA
GTCATAGTGTGCCTACTAAttgcgagggtgtcaaataccacgtgtttcTG
CGTGTTTAATAGTAAAATTAACgttagaaatttttgtttatttacttttt
ttaacttttctgctgattcagcattctgCTGATTCAGTTGATAAAGTATA
GATAAACGAATAAATAAAATAGCaaagtagcgagttgataaagcaacaga
taaacaaatgaagaaaGTAGCAAAGAAGCGAGTAGAAAAAGCAATAGAtt
aacgaatgaagaaagtcaGGAGGTATTTTTTAACTTCGCATTTTTGagtt
agaaaatcttttttggtcgctaaatctaaaattcacttcGCAACTaaagc
acttaagctaaagtcccgcaaaagtgggacaaaaatcagtttcttgaagt
ttgcaaaaaaacgccacatagaagacacaacttttgttgacgtcaaacca
aaggttttatttttccgtgaactttgaacccttctaacattttttctatg
tatgctaaagcatTCCGGattttactaaaagaaagcctgtgatcttagct
ttcaagcggtatataacactgtggacacgggctagacggcaaatttgTCT
GCTACGGGAATGAAAAAAGTTGCAACTATTGatgaacaaatgtttctgga
aatggaggaactcatagttgaaggctgaaactctgtatgtttatcagaaa
aaggttgaggaattcaaaaatcgctagttctagttctttcatcttcatgt
agttttttttagcatgggaatgtcccaaaaatcagggttttctccttttt
ctttacttataactttttgttcctccatttccagaggcctaccacctttt
ttggctcatttcaaccttttccaagctattttcttcaaaaacaaaaataa
aacaatgcaatgtcttcttttctcaaaaaaaggatatatcttttgttatc
ttgataaatatactaaatattttacaaatatttttatataataatattct
aacaccatcaaagaattccaTAGCGCCAGCCTGGATTTAGGTCCCatgca
aaaattaggtcccccctgagttttaagtccccccaaagaaTTATGAATCT
TTTGTTAGCCCCAAGgacttttgactttttagacactttcaaaaaattga
tccagtaaaaaagggttttccaatTTAAATTGTGTTCAGTTCTAAGTTTT
TAAGATCAAATATTTTGCACACTATTTATAAATATATTGCGCCGCAgact
aaaaattttcagattcatgagcttcaatttgagtaattgaaccaactatt
aagctgaattattttagcccccacgtaagtgatgagattttagttCCCCC
CAAGTAAATAGATCCCCCTAAAAAAGTGGCGTAGTTCCAGGCAtctcctt
ttttgggaaagaTTTGGGGTGTAACCCCTCCCCCAACCAGCagggggggc
tgacgctatgaattctccctccaaatttcaggtctctagctacactagaa
aaagagatatgcaaaattaaagaagTATGACTGGAAAAAAGTGACTATCT
ATCTCAGGTAGGTCTTGGGATCCCATAGGGTTCCCTTTAGGGCAGACCTG
CCAATTTGAGATGTTCATTTTGtgtgagataaaaatttcgcAGCGAAATC
TGAAATTTTAGCCTGGTTTATTTGATTGTAGGGAATCGAAAGTCAGgaaa
ttttttcccaaaatgggtatattcaaaaatttagaatattggggaaactt
ttttccaaaaatgagaaaattggGAGAACATTTTTTCcctaaaattagaa
aattcttttaattctgaaaatcagaaaatcggggtaactttttcaaaagt
tggaaaaatcaaggaaaatttttctcaaaaatgcttgAGAAatccaactt
ttcaaaaattgcacAAGGCAATGTGGAAATGTGTGAGTCTCAAAACCAAT
GCATGAGAGTTGCTGGCACCTCTGTTAGGGGCACTTGTAGAGCTGGGAGC
TATTTTAATTAAGGTCTATAAATTCCATGCTATCAGTTTATATTTGTGAA
TGACCAAAATCTATCCTGTCTCAGTGGCGCAAGCAGTTGGGCGCTGGGTT
TAGGTAGGAGACCTATTTCACTGATACaggaaaatctcaaaaaaatacAT
AGAGGACAgttaaaaacaaagttttcacGAAAATTCTTTACAAAAGTCct
cattttcttctttgtcaaattttttcattgcaatttttaaattttcatat
tcaagGATAGTTGCTCTACCAGAAAATGTATATCATACCAaagttttgtg
ggctacatcaggcagaaatttGTATTGCGTATGtgtcaaatatgaaaaat
tggtcagagccctttaaaagaaccatttgaTAATCAATCGATTCAATCTA
TAGATAATCAAGCCTTCCTTTAAAATCCTGATAATAGATTACCAATTCTT
ATTGattattggaattttttattgatCTATTGGTcatcaattgaaaaaaa
attgttgatttgtCAAGTAATAGGGTCTGCTAAAATGTGACCGCTGTGAT
ATCTCTTAAAGAaacattgaaaagctttttctaGAGGGTGCTAGCAATAT
GCAGAATTAAGTGTTTTCATTTCAAGAAATGACTCGCAAGTCAGAAGCTT
GTATCTCAGGAAAGATTAAACATTGTTAAAACAGGctaaaaaattaaaga
tttttgaaatgtttcctCTTGGTTCGGTTCAAGTTGATAATTTgttataa
ttttatttcttacaAAGTGTTTAGTAAAGAGATTGGGAAAAAATGGAGAT
TGATGAGATaaagattgagtttaatgatgTACATGAATCGCCCATGGAAC
ATGAAGTTCCTGCTCAAGCCCTCATGACATTGCACGATTCTGTACAAAAC
ATGCCAAGTAAACAAAAGTCAGCTCTACAGGTAAGATCTTCCCTGCTTTT
ACAATTGTCTTGAATTATCTTGTTTACACAAACAAAAGTAAAGGATAAGT
CCTTTTAATTTATATTTCTCAATTTTATATTGTTTGCCAATAATGAAAAA
TACTATTGTCGTTTCAGAGGATTTTAAGCTAGGCTTGGTGTTAAAATCTC
AGACAGTACTAAAAgggttttcaagtttttttttgcatgataCCCCAATA
GCACCACCCCATCATTTTAGAGAAGTAGTTTTAGTATGTTGTGTATTTTT
GAACTTACAAAATGGTCCTATTAATTAAACAGTGTTTGTTTGTTCGTTCA
TTCGTTAATTACCAGCACTTCTCGGGACTGACTGataaattttttatgat
ttcttGAGGTTTTCTTATTAGTTTTTCCTGACTTTCTGTTTATTTAATAT
AATGTTTCTGTTGATCAGCCAGGTGGGTCTATAAAATTAAAGTATCactt
attttttattaatttagcAAACATTATAGGCATAtgattaaaatgtaaaa
ataactttttttaaaggagaaaattattttcgaaaaatttagggaaaatt
ctaaaaaagatttaaagaagATAAAGTCACCTTTACTTTATTTAGTCCTC
CATGTTTATAAaaggattttaatttttttggtatacCATAACAATTTCAC
TTTAACGTCacgatgtctgagattttaatatgctaaaatttccagggtta
AAAGATTGATTGACCATGTCTGGCATTTCCAAGTTCTGAAGGCTGGATTT
GTATTGCAACATAAGTCAGGTTTTGGTAACTTATTTATTGTAACTGTCTT
ATCCAAGTCCACTGTTTTATAATTACTTGAATTTCTTAGGAAGCAGTAGC
TGATGCATCACCAATCAAACGGCCACGTCTTGAGGGTTTACAGGACAATC
AGCCATGGAACCAATATTCGCCCTTGAAACGCTACGAACCTAGATCTCTT
TCCAAAGATTTCTCACAAGAACAATTGGAGAGCATGAATAAAAACTACAC
CTCAATTAAAAACACTTTGAAGCAATCATCCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046351-exon-scaffold_109-1491911889:70730..70824 | TCONS_00046351-exon-scaffold_109-1491911889:70730..70824 | Clytia hemisphaerica | exon |
| TCONS_00046351-exon-scaffold_109-1510915933:70730..70824 | TCONS_00046351-exon-scaffold_109-1510915933:70730..70824 | Clytia hemisphaerica | exon |
| TCONS_00046351-exon-scaffold_109-1575043694:70730..70824 | TCONS_00046351-exon-scaffold_109-1575043694:70730..70824 | Clytia hemisphaerica | exon |
| TCONS_00046351-exon-scaffold_109-1491911889:75797..75959 | TCONS_00046351-exon-scaffold_109-1491911889:75797..75959 | Clytia hemisphaerica | exon |
| TCONS_00046351-exon-scaffold_109-1510915933:75797..75959 | TCONS_00046351-exon-scaffold_109-1510915933:75797..75959 | Clytia hemisphaerica | exon |
| TCONS_00046351-exon-scaffold_109-1575043694:75797..75959 | TCONS_00046351-exon-scaffold_109-1575043694:75797..75959 | Clytia hemisphaerica | exon |
| TCONS_00046351-exon-scaffold_109-1491911889:76819..77012 | TCONS_00046351-exon-scaffold_109-1491911889:76819..77012 | Clytia hemisphaerica | exon |
| TCONS_00046351-exon-scaffold_109-1510915933:76819..77012 | TCONS_00046351-exon-scaffold_109-1510915933:76819..77012 | Clytia hemisphaerica | exon |
| TCONS_00046351-exon-scaffold_109-1575043694:76819..77012 | TCONS_00046351-exon-scaffold_109-1575043694:76819..77012 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_109 | supercontig | scaffold_109:70730..77012 + |
Blast
The following BLAST results are available for this feature:
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