TCONS_00046352 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046352
Unique NameTCONS_00046352
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4708

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046352 ID=TCONS_00046352|Name=TCONS_00046352|organism=Clytia hemisphaerica|type=transcript|length=4708bp
AAAAAGCAATAGAttaacgaatgaagaaagtcaGGAGTAAAGAGATTGGG
AAAAAATGGAGATTGATGAGATaaagattgagtttaatgatgTACATGAA
TCGCCCATGGAACATGAAGTTCCTGCTCAAGCCCTCATGACATTGCACGA
TTCTGTACAAAACATGCCAAGTAAACAAAAGTCAGCTCTACAGGAAGCAG
TAGCTGATGCATCACCAATCAAACGGCCACGTCTTGAGGGTTTACAGGAC
AATCAGCCATGGAACCAATATTCGCCCTTGAAACGCTACGAACCTAGATC
TCTTTCCAAAGATTTCTCACAAGAACAATTGGAGAGCATGAATAAAAACT
ACACCTCAATTAAAAACACTTTGAAGCAATCATCCGGACGAAGATGGGCG
TATTACGAGTTCTTTTATTCCAACATTGATAGAGCTTTACTACTGGGATG
TAATGATTTTGAGATCTGTCTAAAGCAGATGTTCCAAGATCTGAAAACAA
GGATGTTGACTAGACGCCAGTGGTCCAATATTCGTCGACTGATGGGCAAA
CCCAGGAGGTATTCAGCTGCATTTTTGAAAGAAGAACGTgcaattttaga
agaaaaacgaaagaaaattcGATATCTGCATCAACTGAAAGGGTTTGAGG
TGACAGATATGACACAATTCAAAGacTTACCAGAAGAAGTGCCCACCCCA
ATGGTTATAGGAACTAAGGTGACAGCGAAAGTTCCAGATTATCTTCAAAA
AGATGGATTGAATCTTTTCACTGGCAGCATTGATGCTGTAGATAATGTAA
ACAATACCTTTAGAATCATCTTTGACAGAGAGGGTATTGGATCGCATTCA
ATCCCAGATACTGACGTCTCCAGTGAAGAATATGAATCAATGAATTTACA
ATTATTCGTCGTCAAAGAAAGACCAAAAGTAGCAGAGTCGACAAATCAAA
AAGTGGACAAGAGCGATGCCAATTGTTCTCCAACACGATTACGTCTGAAG
GAAGAACTTCGAAAGGGAAGTGGAGGGACGTTCGGTGGGTTTCCTGTTCA
CTTCTTGTTGCAACTGACCACCCTCTCAAAAGCTATCGCCCTCAAGAAAG
AATACGTGAAAAAACTGAAAGAGATGAACAGTAAAGTTGAATTAGCTCAA
CCTTTTGGTTATATTAAGAAGGACTTTCAACGGGATTATGCATTCGTTGT
TCTGGAATTGGATAAAATCAATACAGAAATGAATGATATTTTCGATAATA
TTCAGCATTATATACACACTGATGCGCCACACATGGGTGCTCTTGATCAA
TCTTTAAACGTTAGAAATGAGTGCAATGAGAAAGCAATGGACTTGATTGA
ACAATCTCAGTGTATTTTGCACGATGAACATATGTTAACTCTCACAAAGC
AGTTCACCTCACTAATGCTACAAATTAATCACGTTGCTGAAAGTGAGGAG
CCGTGTTCTGCGAAATTATCTTTACTGGACTCAGCTGTGGAAGAGATTAA
AGAGACCTTGCATCCTTCAAATAAGAAACTGTTTGAGGACCAAGTGGAGA
TTAGTATTGCTTTCTTGAAGAATAATTTGCAGAACGAGAAGAGTAGTTTG
TCTGCGTTTTCACATAAGAAACAACAGGAGAATTTGTTACCGTTGGTAGA
TAATCTGGATGACAATTTATCTTcgaatgatgaaaatgataatgATGACG
ATGACGATGATTTGCTTCTTGAAGAAGAAGAGGAGGAAGAAATAAAAGAG
GAAGATTCTGATTTGAGTGAGTGAGTGACTGGATGACTGATCTGGGCTGA
TCATAAGTTTTCATTTCAATATTGGGAGCTAAAGAGTCTTTACAATAATT
TAAGGCATTTCAAATCTTTTTCGATTGTGTCTATTTTAAGATCATCTCCC
AGTTTTCTGCTTTTTTTCTTGACCTTTTTGGTCGAAAGTACAGtagactc
tctctaattcgaacttctattattcgaatctttctaaaaTTCGATTTAAA
ACACTGGCCCCCTTAGCTAGAAAGTAGTGTAAATGCCCTCTATAATTTGA
ACCTTTTTATGATTCGACAAAAAGCCCTCgtctcttgaagatcgaattat
agagagccGCCTCTCGTACTATGTAATAAGGATGATGCTGAGTGAATGAT
GGAATTAATTTTCATGTTCATTTTGTGATGTTTTCAGTTTGACTACAAGT
TCAATTGTCAAGGTTCTCCCTTGACATTTAAATTGGCTTTTCAAATAATA
CTGCACtgcatttttatgaaatttcttaGAAATGATTTTAATCCATTTTT
ATATCTATAGGGTAGAGATTTCTACTTTTTATCCTTCATTTTTTAAGGCA
TATATTATCACTTTTGTACATACACATATAGGACATGATAATGACatgaa
acaattctttttttaaatcgatTCAATTATTCCCGGAGTTTTGTTTGAGA
AATCTTTCAATGTTGAagctttcatttttcattttttaaaggtAAAAATC
TATACATGTAAAACTTAAAAATAGAATATATTGAAAACTCGAATTCAAAA
AGATGTTTGGCAGAGTATTGATGAGAAAACCAACAAACTTGACACGAGAA
TTAAAACACATTGGAAACGTTGGTTCCATCAGATGCTCCTCATCGAAATA
TCCAATCAGTCGATACCCGATCGTTGACGATGGAGATGTGGAAAACATGC
CAGAGGATATCAAACAACGAATGCTGGATGTCAAAGAAAAGAGTACCTTC
TTACCAAACGTGTTCAAAACATTGGCGCATCGTCCAGACGAATTTCGATC
ATTCTTCAATTATTATGACGTATTGATGGAGGAAACATCTCTCCTTACCA
AGGCTGAAAAAGAAATGATCGTTGTAGCTACAAGCACCATTAATAACTGT
AATTACTGTCTAGCATCGCATGGTGCTCTATTGAGAATCTACTCCAAGAA
TCCACTCCTTGGTGACCAAGTCGCTGTCAATCACCAACATGCTGATATCA
CAGACCGTCAAAAGAGAATGTTAGATTTTGCCGTTTTGGTAGCTAAGGGA
CAACCCATATCTGATGAAGAGTTTAAAAACATGAGGGAATCTGGTTTTTC
GGATCAAGAGATTTGGGATATTGGAGCCATTGCAGCTTTCTTTGCTTTGA
GTAATCGGATGGCACACTTGACCAATATGAGACCAAATGATGAGTTCTAT
TCGCTTGGACGCATCcccaaagataaaaagtgaacTTACTTATAAAGTGG
TGGTCGTCCTATAGAGCAttatttaaattgaaaataaaatgatgaTATTG
ATGTTTTCACTTTATGTCTTTCATTTGAAAAGGTTATGTATGCTGGAGAA
AATTGATTTAATAGGGAAAATGATTTATTTGTTCAACTAATTATTTGGTC
AATTCTTGGGATGCTGAATCTTTCAACATGGACGTGTTTTgataatgaaa
ttgaaaaattgtttttttgtgattttggtgTGATTACCTCTTTCTTCAAT
CCTTTATGGCTTGACATTGATTAAATTATATTCAGCATGGTGCTATTCTG
ACGTGTATGTTGACCGGATTTTTTCAGTTTACTCTGACTTTGTGATTGGG
TTGTTTTTGGGCTATGCTCGGGGACATTTTTATCTGTCCAAACCAACCAG
CAAATTTCGAatagtgaaataaaaaaaaaatttgtaaataaaatagTGTT
TCTGCATTCAATTTAATTACTGATTAGATTAGTCATACGTTTTCAAGTGT
GTAAAAGCATTTCTAGTCATTTATGGTTCCACGCCAATTTGTTTTGGTAA
AATTCGCTGTCTCATTATCACTGCACTTGCTTTTGAGTCTGGGATTGACG
TCTACACACATTATTATATCTAATTCATAAGTACCTTTATAAGCATAAAA
CCAAGTCCACTGACTCGTGTTTGGTGGTCATTTTTCATTACTCTGACTTT
TTTCAAAGCACCTAAAAGCTGAAAAACCATCAAGCTTAGGACAAAGCTTA
TCTGATTAGGATCCATTTTTTAATTATCActaaatgaattttttgaatat
CATTACAATTTTTTGTATTGATTTTGAGACCTTTGAAATTGCTTATAAAG
AGATGAGAGACAATCTAACAAAGTTTGGCTATACAAATAGGTGATTCTTA
TTTTGTAAATTGACGCGTCTGTGTTCTGTTGTGTCATTTTGTTGACAcat
tatttatttactttcatTCGTAAAACAGTCACTTGTTGAGCTCGAAAACC
GACACCCCCTTTTTCTCTTGATAAATTGTTAACTTTCATTGACACTTTCC
CTTCCatgtacaaaaacaaaaaaaaatgaattttattaaaAGGACACTCG
ACGAACTTGATCATTTTTGTTGTCAACTTGGTGCATCGTATTTTTGGTAG
AATTTATATCgtgttatttgattttttcagtCTCTATTTTGTAGTTATCA
CAAATTTTGTTAGTGGACCCTGCTTTATATGTATCTCGATCGATTTTATG
GTTTCTGAGTCAAAGGAAATCTAAATTGTATATCTATGGATAAAGGTTTT
CTGGTTATTCTTTATAAAGActtctttaaaacttttttttcatttcatag
tAGATTCAGAACCATTTTAAGATTATAAAATCATATGCATCCATCTAAGT
TGAAACTATTCAGTGCGAATTTTTGTTCATCTTTTAATTATAATTATGTC
CCCCATTA
Run BLAST on NCBI

transcript from alignment at scaffold_109:73265..82919+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046352 ID=TCONS_00046352|Name=TCONS_00046352|organism=Clytia hemisphaerica|type=transcript|length=9655bp|location=Sequence derived from alignment at scaffold_109:73265..82919+ (Clytia hemisphaerica)
AAAAAGCAATAGAttaacgaatgaagaaagtcaGGAGGTATTTTTTAACT
TCGCATTTTTGagttagaaaatcttttttggtcgctaaatctaaaattca
cttcGCAACTaaagcacttaagctaaagtcccgcaaaagtgggacaaaaa
tcagtttcttgaagtttgcaaaaaaacgccacatagaagacacaactttt
gttgacgtcaaaccaaaggttttatttttccgtgaactttgaacccttct
aacattttttctatgtatgctaaagcatTCCGGattttactaaaagaaag
cctgtgatcttagctttcaagcggtatataacactgtggacacgggctag
acggcaaatttgTCTGCTACGGGAATGAAAAAAGTTGCAACTATTGatga
acaaatgtttctggaaatggaggaactcatagttgaaggctgaaactctg
tatgtttatcagaaaaaggttgaggaattcaaaaatcgctagttctagtt
ctttcatcttcatgtagttttttttagcatgggaatgtcccaaaaatcag
ggttttctcctttttctttacttataactttttgttcctccatttccaga
ggcctaccaccttttttggctcatttcaaccttttccaagctattttctt
caaaaacaaaaataaaacaatgcaatgtcttcttttctcaaaaaaaggat
atatcttttgttatcttgataaatatactaaatattttacaaatattttt
atataataatattctaacaccatcaaagaattccaTAGCGCCAGCCTGGA
TTTAGGTCCCatgcaaaaattaggtcccccctgagttttaagtcccccca
aagaaTTATGAATCTTTTGTTAGCCCCAAGgacttttgactttttagaca
ctttcaaaaaattgatccagtaaaaaagggttttccaatTTAAATTGTGT
TCAGTTCTAAGTTTTTAAGATCAAATATTTTGCACACTATTTATAAATAT
ATTGCGCCGCAgactaaaaattttcagattcatgagcttcaatttgagta
attgaaccaactattaagctgaattattttagcccccacgtaagtgatga
gattttagttCCCCCCAAGTAAATAGATCCCCCTAAAAAAGTGGCGTAGT
TCCAGGCAtctccttttttgggaaagaTTTGGGGTGTAACCCCTCCCCCA
ACCAGCagggggggctgacgctatgaattctccctccaaatttcaggtct
ctagctacactagaaaaagagatatgcaaaattaaagaagTATGACTGGA
AAAAAGTGACTATCTATCTCAGGTAGGTCTTGGGATCCCATAGGGTTCCC
TTTAGGGCAGACCTGCCAATTTGAGATGTTCATTTTGtgtgagataaaaa
tttcgcAGCGAAATCTGAAATTTTAGCCTGGTTTATTTGATTGTAGGGAA
TCGAAAGTCAGgaaattttttcccaaaatgggtatattcaaaaatttaga
atattggggaaacttttttccaaaaatgagaaaattggGAGAACATTTTT
TCcctaaaattagaaaattcttttaattctgaaaatcagaaaatcggggt
aactttttcaaaagttggaaaaatcaaggaaaatttttctcaaaaatgct
tgAGAAatccaacttttcaaaaattgcacAAGGCAATGTGGAAATGTGTG
AGTCTCAAAACCAATGCATGAGAGTTGCTGGCACCTCTGTTAGGGGCACT
TGTAGAGCTGGGAGCTATTTTAATTAAGGTCTATAAATTCCATGCTATCA
GTTTATATTTGTGAATGACCAAAATCTATCCTGTCTCAGTGGCGCAAGCA
GTTGGGCGCTGGGTTTAGGTAGGAGACCTATTTCACTGATACaggaaaat
ctcaaaaaaatacATAGAGGACAgttaaaaacaaagttttcacGAAAATT
CTTTACAAAAGTCctcattttcttctttgtcaaattttttcattgcaatt
tttaaattttcatattcaagGATAGTTGCTCTACCAGAAAATGTATATCA
TACCAaagttttgtgggctacatcaggcagaaatttGTATTGCGTATGtg
tcaaatatgaaaaattggtcagagccctttaaaagaaccatttgaTAATC
AATCGATTCAATCTATAGATAATCAAGCCTTCCTTTAAAATCCTGATAAT
AGATTACCAATTCTTATTGattattggaattttttattgatCTATTGGTc
atcaattgaaaaaaaattgttgatttgtCAAGTAATAGGGTCTGCTAAAA
TGTGACCGCTGTGATATCTCTTAAAGAaacattgaaaagctttttctaGA
GGGTGCTAGCAATATGCAGAATTAAGTGTTTTCATTTCAAGAAATGACTC
GCAAGTCAGAAGCTTGTATCTCAGGAAAGATTAAACATTGTTAAAACAGG
ctaaaaaattaaagatttttgaaatgtttcctCTTGGTTCGGTTCAAGTT
GATAATTTgttataattttatttcttacaAAGTGTTTAGTAAAGAGATTG
GGAAAAAATGGAGATTGATGAGATaaagattgagtttaatgatgTACATG
AATCGCCCATGGAACATGAAGTTCCTGCTCAAGCCCTCATGACATTGCAC
GATTCTGTACAAAACATGCCAAGTAAACAAAAGTCAGCTCTACAGGTAAG
ATCTTCCCTGCTTTTACAATTGTCTTGAATTATCTTGTTTACACAAACAA
AAGTAAAGGATAAGTCCTTTTAATTTATATTTCTCAATTTTATATTGTTT
GCCAATAATGAAAAATACTATTGTCGTTTCAGAGGATTTTAAGCTAGGCT
TGGTGTTAAAATCTCAGACAGTACTAAAAgggttttcaagtttttttttg
catgataCCCCAATAGCACCACCCCATCATTTTAGAGAAGTAGTTTTAGT
ATGTTGTGTATTTTTGAACTTACAAAATGGTCCTATTAATTAAACAGTGT
TTGTTTGTTCGTTCATTCGTTAATTACCAGCACTTCTCGGGACTGACTGa
taaattttttatgatttcttGAGGTTTTCTTATTAGTTTTTCCTGACTTT
CTGTTTATTTAATATAATGTTTCTGTTGATCAGCCAGGTGGGTCTATAAA
ATTAAAGTATCacttattttttattaatttagcAAACATTATAGGCATAt
gattaaaatgtaaaaataactttttttaaaggagaaaattattttcgaaa
aatttagggaaaattctaaaaaagatttaaagaagATAAAGTCACCTTTA
CTTTATTTAGTCCTCCATGTTTATAAaaggattttaatttttttggtata
cCATAACAATTTCACTTTAACGTCacgatgtctgagattttaatatgcta
aaatttccagggttaAAAGATTGATTGACCATGTCTGGCATTTCCAAGTT
CTGAAGGCTGGATTTGTATTGCAACATAAGTCAGGTTTTGGTAACTTATT
TATTGTAACTGTCTTATCCAAGTCCACTGTTTTATAATTACTTGAATTTC
TTAGGAAGCAGTAGCTGATGCATCACCAATCAAACGGCCACGTCTTGAGG
GTTTACAGGACAATCAGCCATGGAACCAATATTCGCCCTTGAAACGCTAC
GAACCTAGATCTCTTTCCAAAGATTTCTCACAAGAACAATTGGAGAGCAT
GAATAAAAACTACACCTCAATTAAAAACACTTTGAAGCAATCATCCGGAC
GAANTTTTTTATTAATTTAGCAAACATTATAGGCATAtgattaaaatgta
aaaataactttttttaaaggagaaaattattttcgaaaaatttagggaaa
attctaaaaaagatttaaagaagATAAAGTCACCTTTACTTTATTTAGTC
CTCCATGTTTATAAaaggattttaatttttttggtatacCATAACAATTT
CACTTTAACGTCacgatgtctgagattttaatatgctaaaatttccaggg
ttaAAAGATTGATTGACCATGTCTGGCATTTCCAAGTTCTGAAGGCTGGA
TTTGTATTGCAACATAAGTCAGGTTTTGGTAACTTATTTATTGTAACTGT
CTTATCCAAGTCCACTGTTTTATAATTACTTGAATTTCTTAGGAAGCAGT
AGCTGATGCATCACCAATCAAACGGCCACGTCTTGAGGGTTTACAGGACA
ATCAGCCATGGAACCAATATTCGCCCTTGAAACGCTACGAACCTAGATCT
CTTTCCAAAGATTTCTCACAAGAACAATTGGAGAGCATGAATAAAAACTA
CACCTCAATTAAAAACACTTTGAAGCAATCATCCGGACGAAGATGGGCGT
ATTACGAGTTCTTTTATTCCAACATTGATAGAGCTTTACTACTGGGATGT
AATGATTTTGAGATCTGTCTAAAGCAGATGTTCCAAGATCTGAAAACAAG
GATGTTGACTAGACGCCAGTGGTCCAATATTCGTCGACTGATGGGCAAAC
CCAGGAGGTATTCAGCTGCATTTTTGAAAGAAGAACGTgcaattttagaa
gaaaaacgaaagaaaattcGATATCTGCATCAACTGAAAGGGTTTGAGGT
GACAGATATGACACAATTCAAAGGTATCTAGATTTTACACATATCTTTAT
GCCTGATAGTTCTATCATATAGTTTCTATCAAATGGTGCATAGGTTGTGA
CCCTGCTTATCAGTTAAAAAAGACTGTGAGATAATGCACCCTTTCCCCTG
GAATGACCGTGGAGTCAGTTCCAAAGTTTGAGACCTTTAGAGTATTCAGA
AATCTATCatttaattttattattattagacTTACCAGAAGAAGTGCCCA
CCCCAATGGTTATAGGAACTAAGGTGACAGCGAAAGTTCCAGATTATCTT
CAAAAAGATGGATTGAATCTTTTCACTGGCAGCATTGATGCTGTAGATAA
TGTAAACAATACCTTTAGAATCATCTTTGACAGGTACGGCCcaatttatt
tttcgttttcgtttgCTTCAGACAAATATTTTGTTCCAGGAATCCTTATA
TTCTGGCTTCTGATTTTAACAAACCGAAGGAATTTTTCAGGTACCATtac
taatttaaaaaaaattgtttttgtttatattatcGTTGTTTAGAGAGGGT
ATTGGATCGCATTCAATCCCAGATACTGACGTCTCCAGTGAAGAATATGA
ATCAATGAATTTACAATTATTCGTCGTCAAAGAAAGACCAAAAGTAGCAG
GTACATAGAATACACTCATCTTTAGGCAAACTTAATATTTTCATCTTATA
AATTCTTTATAGCAATTTTTCCACAGGAACTGTTTGTAGTTCCTTGATTT
GCATTTAAGAATTCAACTTTATCAGCATTCATTTTATTGGCTTATATAAT
GATGATGATCCAGGTCCATAGACACGGAGTTAAAGTTGCTTGTTCGAATC
CCTTGAAAGCTGAACTGGCTGGCTCTGGGCCCCCAAAAAAATAATCTAAG
TACTATATTACTATGTTTCGAAGCCTCTATTGTATAAGAGAATCCATGTA
GATGAAAatagagaagtttttttttatgaattatttttcttgaTTGTATT
TGTAGAGTCGACAAATCAAAAAGTGGACAAGAGCGATGCCAATTGTTCTC
CAACACGATTACGTCTGAAGGAAGAACTTCGAAAGGGAAGTGGAGGGACG
TTCGGTGGGTTTCCTGTTCACTTCTTGTTGCAACTGACCACCCTCTCAAA
AGCTATCGCCCTCAAGAAAGAATACGTGAAAAAACTGAAAGAGATGAACA
GTAAAGTTGAATTAGCTCAACCTTTTGGTTATATTAAGAAGGACTTTCAA
CGGGATTATGCATTCGTTGTTCTGGAATTGGATAAAATCAATACAGAAAT
GAATGATATTTTCGATAATATTCAGCATTATATACACACTGATGCGCCAC
ACATGGGTGCTCTTGATCAATCTTTAAACGTTAGAAATGAGTGCAATGAG
AAAGCAATGGACTTGATTGAACAATCTCAGTGTATTTTGCACGATGAACA
TATGTTAACTCTCACAAAGCAGTTCACCTCACTAATGCTACAAATTAATC
ACGTTGCTGAAAGTGAGGAGCCGTGTTCTGCGAAATTATCTTTACTGGAC
TCAGCTGTGGAAGAGATTAAAGAGACCTTGCATCCTTCAAATAAGAAACT
GTTTGAGGACCAAGTGGAGATTAGTATTGCTTTCTTGAAGAATAATTTGC
AGAACGAGAAGAGTAGTTTGTCTGCGTTTTCACATAAGAAACAACAGGAG
AATTTGTTACCGTTGGTAGATAATCTGGATGACAATTTATCTTcgaatga
tgaaaatgataatgATGACGATGACGATGATTTGCTTCTTGAAGAAGAAG
AGGAGGAAGAAATAAAAGAGGAAGATTCTGATTTGAGTGAGTGAGTGACT
GGATGACTGATCTGGGCTGATCATAAGTTTTCATTTCAATATTGGGAGCT
AAAGAGTCTTTACAATAATTTAAGGCATTTCAAATCTTTTTCGATTGTGT
CTATTTTAAGATCATCTCCCAGTTTTCTGCTTTTTTTCTTGACCTTTTTG
GTCGAAAGTACAGtagactctctctaattcgaacttctattattcgaatc
tttctaaaaTTCGATTTAAAACACTGGCCCCCTTAGCTAGAAAGTAGTGT
AAATGCCCTCTATAATTTGAACCTTTTTATGATTCGACAAAAAGCCCTCg
tctcttgaagatcgaattatagagagccGCCTCTCGTACTATGTAATAAG
GATGATGCTGAGTGAATGATGGAATTAATTTTCATGTTCATTTTGTGATG
TTTTCAGTTTGACTACAAGTTCAATTGTCAAGGTTCTCCCTTGACATTTA
AATTGGCTTTTCAAATAATACTGCACtgcatttttatgaaatttcttaGA
AATGATTTTAATCCATTTTTATATCTATAGGGTAGAGATTTCTACTTTTT
ATCCTTCATTTTTTAAGGCATATATTATCACTTTTGTACATACACATATA
GGACATGATAATGACatgaaacaattctttttttaaatcgatTCAATTAT
TCCCGGAGTTTTGTTTGAGAAATCTTTCAATGTTGAagctttcatttttc
attttttaaaggtAAAAATCTATACATGTAAAACTTAAAAATAGAATATA
TTGAAAACTCGAATTCAAAAAGATGTTTGGCAGAGTATTGATGAGAAAAC
CAACAAACTTGACACGAGAATTAAAACACATTGGAAACGTTGGTTCCATC
AGATGCTCCTCATCGAAATATCCAATCAGTCGATACCCGATCGTTGACGA
TGGAGATGTGGAAAACATGCCAGAGGATATCAAACAACGAATGCTGGATG
TCAAAGAAAAGGTATTGTGAACTTTTTTATCCGTTCAACTCGTTTATATA
TCTACCCATTCATTCAGAGCAATGATTGAGAATGGTTGTTTTGGGGTGTT
TTTCCCACCTCACAATCTGTTCTTCAATTTATGGTTTGATGAGAAAGTTC
CAAACTTGCTAATAATAAATCATTCATCTTATTTTCATTAAGCTTTTTGA
TTTGTTGGCTTTCTAAATTAATTTATGATTCTTCAGACAAACTTTTATTT
TGACGATGTCCTGTCTTAAAAAAACACCTATTTTATAGAGTACCTTCTTA
CCAAACGTGTTCAAAACATTGGCGCATCGTCCAGACGAATTTCGATCATT
CTTCAATTATTATGACGTATTGATGGAGGAAACATCTCTCCTTACCAAGG
CTGAAAAAGAAATGATCGTTGTAGCTACAAGCACCATTAATAACTGTAAT
TACTGTCTAGCATCGCATGGTGCTCTATTGAGAATCTACTCCAAGAATCC
ACTCCTTGGTGACCAAGTCGCTGTCAATCACCAACATGCTGATATCACAG
ACCGTCAAAAGAGAATGTTAGATTTTGCCGTTTTGGTAGCTAAGGGACAA
CCCATATCTGATGAAGAGTTTAAAAACATGAGGGAATCTGGTTTTTCGGA
TCAAGAGATTTGGGATATTGGAGCCATTGCAGCTTTCTTTGCTTTGAGTA
ATCGGATGGCACACTTGACCAATATGAGACCAAATGATGAGTTCTATTCG
CTTGGACGCATCcccaaagataaaaagtgaacTTACTTATAAAGTGGTGG
TCGTCCTATAGAGCAttatttaaattgaaaataaaatgatgaTATTGATG
TTTTCACTTTATGTCTTTCATTTGAAAAGGTTATGTATGCTGGAGAAAAT
TGATTTAATAGGGAAAATGATTTATTTGTTCAACTAATTATTTGGTCAAT
TCTTGGGATGCTGAATCTTTCAACATGGACGTGTTTTgataatgaaattg
aaaaattgtttttttgtgattttggtgTGATTACCTCTTTCTTCAATCCT
TTATGGCTTGACATTGATTAAATTATATTCAGCATGGTGCTATTCTGACG
TGTATGTTGACCGGATTTTTTCAGTTTACTCTGACTTTGTGATTGGGTTG
TTTTTGGGCTATGCTCGGGGACATTTTTATCTGTCCAAACCAACCAGCAA
ATTTCGAatagtgaaataaaaaaaaaatttgtaaataaaatagTGTTTCT
GCATTCAATTTAATTACTGATTAGATTAGTCATACGTTTTCAAGTGTGTA
AAAGCATTTCTAGTCATTTATGGTTCCACGCCAATTTGTTTTGGTAAAAT
TCGCTGTCTCATTATCACTGCACTTGCTTTTGAGTCTGGGATTGACGTCT
ACACACATTATTATATCTAATTCATAAGTACCTTTATAAGCATAAAACCA
AGTCCACTGACTCGTGTTTGGTGGTCATTTTTCATTACTCTGACTTTTTT
CAAAGCACCTAAAAGCTGAAAAACCATCAAGCTTAGGACAAAGCTTATCT
GATTAGGATCCATTTTTTAATTATCActaaatgaattttttgaatatCAT
TACAATTTTTTGTATTGATTTTGAGACCTTTGAAATTGCTTATAAAGAGA
TGAGAGACAATCTAACAAAGTTTGGCTATACAAATAGGTGATTCTTATTT
TGTAAATTGACGCGTCTGTGTTCTGTTGTGTCATTTTGTTGACAcattat
ttatttactttcatTCGTAAAACAGTCACTTGTTGAGCTCGAAAACCGAC
ACCCCCTTTTTCTCTTGATAAATTGTTAACTTTCATTGACACTTTCCCTT
CCatgtacaaaaacaaaaaaaaatgaattttattaaaAGGACACTCGACG
AACTTGATCATTTTTGTTGTCAACTTGGTGCATCGTATTTTTGGTAGAAT
TTATATCgtgttatttgattttttcagtCTCTATTTTGTAGTTATCACAA
ATTTTGTTAGTGGACCCTGCTTTATATGTATCTCGATCGATTTTATGGTT
TCTGAGTCAAAGGAAATCTAAATTGTATATCTATGGATAAAGGTTTTCTG
GTTATTCTTTATAAAGActtctttaaaacttttttttcatttcatagtAG
ATTCAGAACCATTTTAAGATTATAAAATCATATGCATCCATCTAAGTTGA
AACTATTCAGTGCGAATTTTTGTTCATCTTTTAATTATAATTATGTCCCC
CATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029594XLOC_029594Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046352-exon-scaffold_109-1491911889:73265..73301TCONS_00046352-exon-scaffold_109-1491911889:73265..73301Clytia hemisphaericaexon
TCONS_00046352-exon-scaffold_109-1510915933:73265..73301TCONS_00046352-exon-scaffold_109-1510915933:73265..73301Clytia hemisphaericaexon
TCONS_00046352-exon-scaffold_109-1575043694:73265..73301TCONS_00046352-exon-scaffold_109-1575043694:73265..73301Clytia hemisphaericaexon
TCONS_00046352-exon-scaffold_109-1491911889:75804..75959TCONS_00046352-exon-scaffold_109-1491911889:75804..75959Clytia hemisphaericaexon
TCONS_00046352-exon-scaffold_109-1510915933:75804..75959TCONS_00046352-exon-scaffold_109-1510915933:75804..75959Clytia hemisphaericaexon
TCONS_00046352-exon-scaffold_109-1575043694:75804..75959TCONS_00046352-exon-scaffold_109-1575043694:75804..75959Clytia hemisphaericaexon
TCONS_00046352-exon-scaffold_109-1491911889:77407..77887TCONS_00046352-exon-scaffold_109-1491911889:77407..77887Clytia hemisphaericaexon
TCONS_00046352-exon-scaffold_109-1510915933:77407..77887TCONS_00046352-exon-scaffold_109-1510915933:77407..77887Clytia hemisphaericaexon
TCONS_00046352-exon-scaffold_109-1575043694:77407..77887TCONS_00046352-exon-scaffold_109-1575043694:77407..77887Clytia hemisphaericaexon
TCONS_00046352-exon-scaffold_109-1491911889:78094..78247TCONS_00046352-exon-scaffold_109-1491911889:78094..78247Clytia hemisphaericaexon
TCONS_00046352-exon-scaffold_109-1510915933:78094..78247TCONS_00046352-exon-scaffold_109-1510915933:78094..78247Clytia hemisphaericaexon
TCONS_00046352-exon-scaffold_109-1575043694:78094..78247TCONS_00046352-exon-scaffold_109-1575043694:78094..78247Clytia hemisphaericaexon
TCONS_00046352-exon-scaffold_109-1491911889:78408..78514TCONS_00046352-exon-scaffold_109-1491911889:78408..78514Clytia hemisphaericaexon
TCONS_00046352-exon-scaffold_109-1510915933:78408..78514TCONS_00046352-exon-scaffold_109-1510915933:78408..78514Clytia hemisphaericaexon
TCONS_00046352-exon-scaffold_109-1575043694:78408..78514TCONS_00046352-exon-scaffold_109-1575043694:78408..78514Clytia hemisphaericaexon
TCONS_00046352-exon-scaffold_109-1491911889:78870..80675TCONS_00046352-exon-scaffold_109-1491911889:78870..80675Clytia hemisphaericaexon
TCONS_00046352-exon-scaffold_109-1510915933:78870..80675TCONS_00046352-exon-scaffold_109-1510915933:78870..80675Clytia hemisphaericaexon
TCONS_00046352-exon-scaffold_109-1575043694:78870..80675TCONS_00046352-exon-scaffold_109-1575043694:78870..80675Clytia hemisphaericaexon
TCONS_00046352-exon-scaffold_109-1491911889:80953..82919TCONS_00046352-exon-scaffold_109-1491911889:80953..82919Clytia hemisphaericaexon
TCONS_00046352-exon-scaffold_109-1510915933:80953..82919TCONS_00046352-exon-scaffold_109-1510915933:80953..82919Clytia hemisphaericaexon
TCONS_00046352-exon-scaffold_109-1575043694:80953..82919TCONS_00046352-exon-scaffold_109-1575043694:80953..82919Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_109supercontigscaffold_109:73265..82919 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0169116	0.10964	0.000249305	0.831026	0.00641083	0.000419141	0.00574178	0.000322765	0.143237	0	0	1.66922e-07	0.587794	0	1.80991	0.288349	0	0.221298	0.0523954	0.000276378	8.92221e-09	0	1.34662	0.286779	0	0	4.45195e-08	3.96258e-08	1.22423	2.64827
Blast
[Close]
BLAST of TCONS_00046352 vs. Swiss-Prot (Human)
Match: LIN9 (Protein lin-9 homolog OS=Homo sapiens GN=LIN9 PE=1 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 1.391e-98
Identity = 192/486 (39.51%), Postives = 294/486 (60.49%), Query Frame = 2 
Query:  221 KRPRLEGLQDNQPWNQYSPLKRYE-----PRSLSKDFSQEQLESMNKNYTSIKNTLKQSSGRRWAYYEFFYSNIDRALLLGCNDFEICLKQMFQDLKTRMLTRRQWSNIRRLMGKPRRYSAAFLKEERAILEEKRKKIRYLHQLKGFEVTDMTQFKDLPEEVPTPMVIGTKVTAKVPDYLQKDGLNLFTGSIDAVDNVNNTFRIIFDREGIGSHSIPDTDV-SSEEYESMNLQLFVVKERPKVAESTNQKVDKSDANCSPT--------RLRLKEELRKGSGGTFGGFPVHFLLQLTTLSKAIALKKEYVKKLKEMNSKVELAQPFGY-IKKDFQRDYAFVVLELDKINTEMNDIFDNIQHYIHTDAPHMG--ALDQSLNVRNECNEKAMDLIEQS-----QCILHDEHMLTLTKQFTSLMLQINHVAESEEPCSAKLSLLDSAVEEIKETLHPSNKKLFEDQVEISIAFLKNNLQNEKSSLSAFS 1612
            KR RL   +D++  N  SP KR +     P+  +   S    ++  K    ++N LK     +W  YE+FYSNID+ L  G NDF +CLK+ F +LKTR LTR +W  IRRLMGKPRR S+AF +EER+ L++KR+KIR L Q K   V D++QFKDLP+E+P P+VIGTKVTA++      DG  LFTG IDAVD +N T+R+ FDR G+G+H+IPD +V S+E +E+M +  F  K+RP     T  ++  +    SP         +   + ++      T GGFPV FL+Q+T LSK + +KKE++KKL+EMN++ E  + +   I  +FQR YA +VLEL+++N ++N +   +Q Y +  AP  G    DQ  ++R  C E+A +++  +     Q  + +E++  L  + T+++LQI  +AE  +  S +   L  ++ +IK T+  SN   F++ VEI +A +++ L ++  +L AF+
Sbjct:   59 KRSRLFSDEDDRQINTRSP-KRNQRVAMVPQKFTATMSTPDKKASQKIGFRLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLKTRKLTRVEWGKIRRLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRK---VADVSQFKDLPDEIPLPLVIGTKVTARLRGV--HDG--LFTGQIDAVDTLNATYRVTFDRTGLGTHTIPDYEVLSNEPHETMPIAAFGQKQRPSRFFMTPPRLHYTPPLQSPIIDNDPLLGQSPWRSKISGSDTETLGGFPVEFLIQVTRLSKILMIKKEHIKKLREMNTEAEKLKSYSMPISIEFQRRYATIVLELEQLNKDLNKVLHKVQQYCYELAPDQGLQPADQPTDMRRRCEEEAQEIVRHANSSTGQPCVENENLTDLISRLTAILLQIKCLAEGGDLNSFEFKSLTDSLNDIKSTIDASNISCFQNNVEIHVAHIQSGL-SQMGNLHAFA 535
The following BLAST results are available for this feature:
BLAST of TCONS_00046352 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LIN91.391e-9839.51Protein lin-9 homolog OS=Homo sapiens GN=LIN9 PE=1... [more]
back to top