TCONS_00046354 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046354
Unique NameTCONS_00046354
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4765

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046354 ID=TCONS_00046354|Name=TCONS_00046354|organism=Clytia hemisphaerica|type=transcript|length=4765bp
tctccctccaaatttcaggtctctagctacactagaaaaagagatatgca
aaattaaagaagTATGACTGGAAAAAAGTGACTATCTATCTCAGTAAAGA
GATTGGGAAAAAATGGAGATTGATGAGATaaagattgagtttaatgatgT
ACATGAATCGCCCATGGAACATGAAGTTCCTGCTCAAGCCCTCATGACAT
TGCACGATTCTGTACAAAACATGCCAAGTAAACAAAAGTCAGCTCTACAG
GAAGCAGTAGCTGATGCATCACCAATCAAACGGCCACGTCTTGAGGGTTT
ACAGGACAATCAGCCATGGAACCAATATTCGCCCTTGAAACGCTACGAAC
CTAGATCTCTTTCCAAAGATTTCTCACAAGAACAATTGGAGAGCATGAAT
AAAAACTACACCTCAATTAAAAACACTTTGAAGCAATCATCCGGACGAAG
ATGGGCGTATTACGAGTTCTTTTATTCCAACATTGATAGAGCTTTACTAC
TGGGATGTAATGATTTTGAGATCTGTCTAAAGCAGATGTTCCAAGATCTG
AAAACAAGGATGTTGACTAGACGCCAGTGGTCCAATATTCGTCGACTGAT
GGGCAAACCCAGGAGGTATTCAGCTGCATTTTTGAAAGAAGAACGTgcaa
ttttagaagaaaaacgaaagaaaattcGATATCTGCATCAACTGAAAGGG
TTTGAGGTGACAGATATGACACAATTCAAAGacTTACCAGAAGAAGTGCC
CACCCCAATGGTTATAGGAACTAAGGTGACAGCGAAAGTTCCAGATTATC
TTCAAAAAGATGGATTGAATCTTTTCACTGGCAGCATTGATGCTGTAGAT
AATGTAAACAATACCTTTAGAATCATCTTTGACAGAGAGGGTATTGGATC
GCATTCAATCCCAGATACTGACGTCTCCAGTGAAGAATATGAATCAATGA
ATTTACAATTATTCGTCGTCAAAGAAAGACCAAAAGTAGCAGAGTCGACA
AATCAAAAAGTGGACAAGAGCGATGCCAATTGTTCTCCAACACGATTACG
TCTGAAGGAAGAACTTCGAAAGGGAAGTGGAGGGACGTTCGGTGGGTTTC
CTGTTCACTTCTTGTTGCAACTGACCACCCTCTCAAAAGCTATCGCCCTC
AAGAAAGAATACGTGAAAAAACTGAAAGAGATGAACAGTAAAGTTGAATT
AGCTCAACCTTTTGGTTATATTAAGAAGGACTTTCAACGGGATTATGCAT
TCGTTGTTCTGGAATTGGATAAAATCAATACAGAAATGAATGATATTTTC
GATAATATTCAGCATTATATACACACTGATGCGCCACACATGGGTGCTCT
TGATCAATCTTTAAACGTTAGAAATGAGTGCAATGAGAAAGCAATGGACT
TGATTGAACAATCTCAGTGTATTTTGCACGATGAACATATGTTAACTCTC
ACAAAGCAGTTCACCTCACTAATGCTACAAATTAATCACGTTGCTGAAAG
TGAGGAGCCGTGTTCTGCGAAATTATCTTTACTGGACTCAGCTGTGGAAG
AGATTAAAGAGACCTTGCATCCTTCAAATAAGAAACTGTTTGAGGACCAA
GTGGAGATTAGTATTGCTTTCTTGAAGAATAATTTGCAGAACGAGAAGAG
TAGTTTGTCTGCGTTTTCACATAAGAAACAACAGGAGAATTTGTTACCGT
TGGTAGATAATCTGGATGACAATTTATCTTcgaatgatgaaaatgataat
gATGACGATGACGATGATTTGCTTCTTGAAGAAGAAGAGGAGGAAGAAAT
AAAAGAGGAAGATTCTGATTTGAGTGAGTGAGTGACTGGATGACTGATCT
GGGCTGATCATAAGTTTTCATTTCAATATTGGGAGCTAAAGAGTCTTTAC
AATAATTTAAGGCATTTCAAATCTTTTTCGATTGTGTCTATTTTAAGATC
ATCTCCCAGTTTTCTGCTTTTTTTCTTGACCTTTTTGGTCGAAAGTACAG
tagactctctctaattcgaacttctattattcgaatctttctaaaaTTCG
ATTTAAAACACTGGCCCCCTTAGCTAGAAAGTAGTGTAAATGCCCTCTAT
AATTTGAACCTTTTTATGATTCGACAAAAAGCCCTCgtctcttgaagatc
gaattatagagagccGCCTCTCGTACTATGTAATAAGGATGATGCTGAGT
GAATGATGGAATTAATTTTCATGTTCATTTTGTGATGTTTTCAGTTTGAC
TACAAGTTCAATTGTCAAGGTTCTCCCTTGACATTTAAATTGGCTTTTCA
AATAATACTGCACtgcatttttatgaaatttcttaGAAATGATTTTAATC
CATTTTTATATCTATAGGGTAGAGATTTCTACTTTTTATCCTTCATTTTT
TAAGGCATATATTATCACTTTTGTACATACACATATAGGACATGATAATG
ACatgaaacaattctttttttaaatcgatTCAATTATTCCCGGAGTTTTG
TTTGAGAAATCTTTCAATGTTGAagctttcatttttcattttttaaaggt
AAAAATCTATACATGTAAAACTTAAAAATAGAATATATTGAAAACTCGAA
TTCAAAAAGATGTTTGGCAGAGTATTGATGAGAAAACCAACAAACTTGAC
ACGAGAATTAAAACACATTGGAAACGTTGGTTCCATCAGATGCTCCTCAT
CGAAATATCCAATCAGTCGATACCCGATCGTTGACGATGGAGATGTGGAA
AACATGCCAGAGGATATCAAACAACGAATGCTGGATGTCAAAGAAAAGAG
TACCTTCTTACCAAACGTGTTCAAAACATTGGCGCATCGTCCAGACGAAT
TTCGATCATTCTTCAATTATTATGACGTATTGATGGAGGAAACATCTCTC
CTTACCAAGGCTGAAAAAGAAATGATCGTTGTAGCTACAAGCACCATTAA
TAACTGTAATTACTGTCTAGCATCGCATGGTGCTCTATTGAGAATCTACT
CCAAGAATCCACTCCTTGGTGACCAAGTCGCTGTCAATCACCAACATGCT
GATATCACAGACCGTCAAAAGAGAATGTTAGATTTTGCCGTTTTGGTAGC
TAAGGGACAACCCATATCTGATGAAGAGTTTAAAAACATGAGGGAATCTG
GTTTTTCGGATCAAGAGATTTGGGATATTGGAGCCATTGCAGCTTTCTTT
GCTTTGAGTAATCGGATGGCACACTTGACCAATATGAGACCAAATGATGA
GTTCTATTCGCTTGGACGCATCcccaaagataaaaagtgaacTTACTTAT
AAAGTGGTGGTCGTCCTATAGAGCAttatttaaattgaaaataaaatgat
gaTATTGATGTTTTCACTTTATGTCTTTCATTTGAAAAGGTTATGTATGC
TGGAGAAAATTGATTTAATAGGGAAAATGATTTATTTGTTCAACTAATTA
TTTGGTCAATTCTTGGGATGCTGAATCTTTCAACATGGACGTGTTTTgat
aatgaaattgaaaaattgtttttttgtgattttggtgTGATTACCTCTTT
CTTCAATCCTTTATGGCTTGACATTGATTAAATTATATTCAGCATGGTGC
TATTCTGACGTGTATGTTGACCGGATTTTTTCAGTTTACTCTGACTTTGT
GATTGGGTTGTTTTTGGGCTATGCTCGGGGACATTTTTATCTGTCCAAAC
CAACCAGCAAATTTCGAatagtgaaataaaaaaaaaatttgtaaataaaa
tagTGTTTCTGCATTCAATTTAATTACTGATTAGATTAGTCATACGTTTT
CAAGTGTGTAAAAGCATTTCTAGTCATTTATGGTTCCACGCCAATTTGTT
TTGGTAAAATTCGCTGTCTCATTATCACTGCACTTGCTTTTGAGTCTGGG
ATTGACGTCTACACACATTATTATATCTAATTCATAAGTACCTTTATAAG
CATAAAACCAAGTCCACTGACTCGTGTTTGGTGGTCATTTTTCATTACTC
TGACTTTTTTCAAAGCACCTAAAAGCTGAAAAACCATCAAGCTTAGGACA
AAGCTTATCTGATTAGGATCCATTTTTTAATTATCActaaatgaattttt
tgaatatCATTACAATTTTTTGTATTGATTTTGAGACCTTTGAAATTGCT
TATAAAGAGATGAGAGACAATCTAACAAAGTTTGGCTATACAAATAGGTG
ATTCTTATTTTGTAAATTGACGCGTCTGTGTTCTGTTGTGTCATTTTGTT
GACAcattatttatttactttcatTCGTAAAACAGTCACTTGTTGAGCTC
GAAAACCGACACCCCCTTTTTCTCTTGATAAATTGTTAACTTTCATTGAC
ACTTTCCCTTCCatgtacaaaaacaaaaaaaaatgaattttattaaaAGG
ACACTCGACGAACTTGATCATTTTTGTTGTCAACTTGGTGCATCGTATTT
TTGGTAGAATTTATATCgtgttatttgattttttcagtCTCTATTTTGTA
GTTATCACAAATTTTGTTAGTGGACCCTGCTTTATATGTATCTCGATCGA
TTTTATGGTTTCTGAGTCAAAGGAAATCTAAATTGTATATCTATGGATAA
AGGTTTTCTGGTTATTCTTTATAAAGActtctttaaaacttttttttcat
ttcatagtAGATTCAGAACCATTTTAAGATTATAAAATCATATGCATCCA
TCTAAGTTGAAACTATTCAGTGCGAATTTTTGTTCATCTTTTAATTATAA
TTATGTCCCCCATTA
Run BLAST on NCBI

transcript from alignment at scaffold_109:74493..82919+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046354 ID=TCONS_00046354|Name=TCONS_00046354|organism=Clytia hemisphaerica|type=transcript|length=8427bp|location=Sequence derived from alignment at scaffold_109:74493..82919+ (Clytia hemisphaerica)
tctccctccaaatttcaggtctctagctacactagaaaaagagatatgca
aaattaaagaagTATGACTGGAAAAAAGTGACTATCTATCTCAGGTAGGT
CTTGGGATCCCATAGGGTTCCCTTTAGGGCAGACCTGCCAATTTGAGATG
TTCATTTTGtgtgagataaaaatttcgcAGCGAAATCTGAAATTTTAGCC
TGGTTTATTTGATTGTAGGGAATCGAAAGTCAGgaaattttttcccaaaa
tgggtatattcaaaaatttagaatattggggaaacttttttccaaaaatg
agaaaattggGAGAACATTTTTTCcctaaaattagaaaattcttttaatt
ctgaaaatcagaaaatcggggtaactttttcaaaagttggaaaaatcaag
gaaaatttttctcaaaaatgcttgAGAAatccaacttttcaaaaattgca
cAAGGCAATGTGGAAATGTGTGAGTCTCAAAACCAATGCATGAGAGTTGC
TGGCACCTCTGTTAGGGGCACTTGTAGAGCTGGGAGCTATTTTAATTAAG
GTCTATAAATTCCATGCTATCAGTTTATATTTGTGAATGACCAAAATCTA
TCCTGTCTCAGTGGCGCAAGCAGTTGGGCGCTGGGTTTAGGTAGGAGACC
TATTTCACTGATACaggaaaatctcaaaaaaatacATAGAGGACAgttaa
aaacaaagttttcacGAAAATTCTTTACAAAAGTCctcattttcttcttt
gtcaaattttttcattgcaatttttaaattttcatattcaagGATAGTTG
CTCTACCAGAAAATGTATATCATACCAaagttttgtgggctacatcaggc
agaaatttGTATTGCGTATGtgtcaaatatgaaaaattggtcagagccct
ttaaaagaaccatttgaTAATCAATCGATTCAATCTATAGATAATCAAGC
CTTCCTTTAAAATCCTGATAATAGATTACCAATTCTTATTGattattgga
attttttattgatCTATTGGTcatcaattgaaaaaaaattgttgatttgt
CAAGTAATAGGGTCTGCTAAAATGTGACCGCTGTGATATCTCTTAAAGAa
acattgaaaagctttttctaGAGGGTGCTAGCAATATGCAGAATTAAGTG
TTTTCATTTCAAGAAATGACTCGCAAGTCAGAAGCTTGTATCTCAGGAAA
GATTAAACATTGTTAAAACAGGctaaaaaattaaagatttttgaaatgtt
tcctCTTGGTTCGGTTCAAGTTGATAATTTgttataattttatttcttac
aAAGTGTTTAGTAAAGAGATTGGGAAAAAATGGAGATTGATGAGATaaag
attgagtttaatgatgTACATGAATCGCCCATGGAACATGAAGTTCCTGC
TCAAGCCCTCATGACATTGCACGATTCTGTACAAAACATGCCAAGTAAAC
AAAAGTCAGCTCTACAGGTAAGATCTTCCCTGCTTTTACAATTGTCTTGA
ATTATCTTGTTTACACAAACAAAAGTAAAGGATAAGTCCTTTTAATTTAT
ATTTCTCAATTTTATATTGTTTGCCAATAATGAAAAATACTATTGTCGTT
TCAGAGGATTTTAAGCTAGGCTTGGTGTTAAAATCTCAGACAGTACTAAA
AgggttttcaagtttttttttgcatgataCCCCAATAGCACCACCCCATC
ATTTTAGAGAAGTAGTTTTAGTATGTTGTGTATTTTTGAACTTACAAAAT
GGTCCTATTAATTAAACAGTGTTTGTTTGTTCGTTCATTCGTTAATTACC
AGCACTTCTCGGGACTGACTGataaattttttatgatttcttGAGGTTTT
CTTATTAGTTTTTCCTGACTTTCTGTTTATTTAATATAATGTTTCTGTTG
ATCAGCCAGGTGGGTCTATAAAATTAAAGTATCacttattttttattaat
ttagcAAACATTATAGGCATAtgattaaaatgtaaaaataacttttttta
aaggagaaaattattttcgaaaaatttagggaaaattctaaaaaagattt
aaagaagATAAAGTCACCTTTACTTTATTTAGTCCTCCATGTTTATAAaa
ggattttaatttttttggtatacCATAACAATTTCACTTTAACGTCacga
tgtctgagattttaatatgctaaaatttccagggttaAAAGATTGATTGA
CCATGTCTGGCATTTCCAAGTTCTGAAGGCTGGATTTGTATTGCAACATA
AGTCAGGTTTTGGTAACTTATTTATTGTAACTGTCTTATCCAAGTCCACT
GTTTTATAATTACTTGAATTTCTTAGGAAGCAGTAGCTGATGCATCACCA
ATCAAACGGCCACGTCTTGAGGGTTTACAGGACAATCAGCCATGGAACCA
ATATTCGCCCTTGAAACGCTACGAACCTAGATCTCTTTCCAAAGATTTCT
CACAAGAACAATTGGAGAGCATGAATAAAAACTACACCTCAATTAAAAAC
ACTTTGAAGCAATCATCCGGACGAANTTTTTTATTAATTTAGCAAACATT
ATAGGCATAtgattaaaatgtaaaaataactttttttaaaggagaaaatt
attttcgaaaaatttagggaaaattctaaaaaagatttaaagaagATAAA
GTCACCTTTACTTTATTTAGTCCTCCATGTTTATAAaaggattttaattt
ttttggtatacCATAACAATTTCACTTTAACGTCacgatgtctgagattt
taatatgctaaaatttccagggttaAAAGATTGATTGACCATGTCTGGCA
TTTCCAAGTTCTGAAGGCTGGATTTGTATTGCAACATAAGTCAGGTTTTG
GTAACTTATTTATTGTAACTGTCTTATCCAAGTCCACTGTTTTATAATTA
CTTGAATTTCTTAGGAAGCAGTAGCTGATGCATCACCAATCAAACGGCCA
CGTCTTGAGGGTTTACAGGACAATCAGCCATGGAACCAATATTCGCCCTT
GAAACGCTACGAACCTAGATCTCTTTCCAAAGATTTCTCACAAGAACAAT
TGGAGAGCATGAATAAAAACTACACCTCAATTAAAAACACTTTGAAGCAA
TCATCCGGACGAAGATGGGCGTATTACGAGTTCTTTTATTCCAACATTGA
TAGAGCTTTACTACTGGGATGTAATGATTTTGAGATCTGTCTAAAGCAGA
TGTTCCAAGATCTGAAAACAAGGATGTTGACTAGACGCCAGTGGTCCAAT
ATTCGTCGACTGATGGGCAAACCCAGGAGGTATTCAGCTGCATTTTTGAA
AGAAGAACGTgcaattttagaagaaaaacgaaagaaaattcGATATCTGC
ATCAACTGAAAGGGTTTGAGGTGACAGATATGACACAATTCAAAGGTATC
TAGATTTTACACATATCTTTATGCCTGATAGTTCTATCATATAGTTTCTA
TCAAATGGTGCATAGGTTGTGACCCTGCTTATCAGTTAAAAAAGACTGTG
AGATAATGCACCCTTTCCCCTGGAATGACCGTGGAGTCAGTTCCAAAGTT
TGAGACCTTTAGAGTATTCAGAAATCTATCatttaattttattattatta
gacTTACCAGAAGAAGTGCCCACCCCAATGGTTATAGGAACTAAGGTGAC
AGCGAAAGTTCCAGATTATCTTCAAAAAGATGGATTGAATCTTTTCACTG
GCAGCATTGATGCTGTAGATAATGTAAACAATACCTTTAGAATCATCTTT
GACAGGTACGGCCcaatttatttttcgttttcgtttgCTTCAGACAAATA
TTTTGTTCCAGGAATCCTTATATTCTGGCTTCTGATTTTAACAAACCGAA
GGAATTTTTCAGGTACCATtactaatttaaaaaaaattgtttttgtttat
attatcGTTGTTTAGAGAGGGTATTGGATCGCATTCAATCCCAGATACTG
ACGTCTCCAGTGAAGAATATGAATCAATGAATTTACAATTATTCGTCGTC
AAAGAAAGACCAAAAGTAGCAGGTACATAGAATACACTCATCTTTAGGCA
AACTTAATATTTTCATCTTATAAATTCTTTATAGCAATTTTTCCACAGGA
ACTGTTTGTAGTTCCTTGATTTGCATTTAAGAATTCAACTTTATCAGCAT
TCATTTTATTGGCTTATATAATGATGATGATCCAGGTCCATAGACACGGA
GTTAAAGTTGCTTGTTCGAATCCCTTGAAAGCTGAACTGGCTGGCTCTGG
GCCCCCAAAAAAATAATCTAAGTACTATATTACTATGTTTCGAAGCCTCT
ATTGTATAAGAGAATCCATGTAGATGAAAatagagaagtttttttttatg
aattatttttcttgaTTGTATTTGTAGAGTCGACAAATCAAAAAGTGGAC
AAGAGCGATGCCAATTGTTCTCCAACACGATTACGTCTGAAGGAAGAACT
TCGAAAGGGAAGTGGAGGGACGTTCGGTGGGTTTCCTGTTCACTTCTTGT
TGCAACTGACCACCCTCTCAAAAGCTATCGCCCTCAAGAAAGAATACGTG
AAAAAACTGAAAGAGATGAACAGTAAAGTTGAATTAGCTCAACCTTTTGG
TTATATTAAGAAGGACTTTCAACGGGATTATGCATTCGTTGTTCTGGAAT
TGGATAAAATCAATACAGAAATGAATGATATTTTCGATAATATTCAGCAT
TATATACACACTGATGCGCCACACATGGGTGCTCTTGATCAATCTTTAAA
CGTTAGAAATGAGTGCAATGAGAAAGCAATGGACTTGATTGAACAATCTC
AGTGTATTTTGCACGATGAACATATGTTAACTCTCACAAAGCAGTTCACC
TCACTAATGCTACAAATTAATCACGTTGCTGAAAGTGAGGAGCCGTGTTC
TGCGAAATTATCTTTACTGGACTCAGCTGTGGAAGAGATTAAAGAGACCT
TGCATCCTTCAAATAAGAAACTGTTTGAGGACCAAGTGGAGATTAGTATT
GCTTTCTTGAAGAATAATTTGCAGAACGAGAAGAGTAGTTTGTCTGCGTT
TTCACATAAGAAACAACAGGAGAATTTGTTACCGTTGGTAGATAATCTGG
ATGACAATTTATCTTcgaatgatgaaaatgataatgATGACGATGACGAT
GATTTGCTTCTTGAAGAAGAAGAGGAGGAAGAAATAAAAGAGGAAGATTC
TGATTTGAGTGAGTGAGTGACTGGATGACTGATCTGGGCTGATCATAAGT
TTTCATTTCAATATTGGGAGCTAAAGAGTCTTTACAATAATTTAAGGCAT
TTCAAATCTTTTTCGATTGTGTCTATTTTAAGATCATCTCCCAGTTTTCT
GCTTTTTTTCTTGACCTTTTTGGTCGAAAGTACAGtagactctctctaat
tcgaacttctattattcgaatctttctaaaaTTCGATTTAAAACACTGGC
CCCCTTAGCTAGAAAGTAGTGTAAATGCCCTCTATAATTTGAACCTTTTT
ATGATTCGACAAAAAGCCCTCgtctcttgaagatcgaattatagagagcc
GCCTCTCGTACTATGTAATAAGGATGATGCTGAGTGAATGATGGAATTAA
TTTTCATGTTCATTTTGTGATGTTTTCAGTTTGACTACAAGTTCAATTGT
CAAGGTTCTCCCTTGACATTTAAATTGGCTTTTCAAATAATACTGCACtg
catttttatgaaatttcttaGAAATGATTTTAATCCATTTTTATATCTAT
AGGGTAGAGATTTCTACTTTTTATCCTTCATTTTTTAAGGCATATATTAT
CACTTTTGTACATACACATATAGGACATGATAATGACatgaaacaattct
ttttttaaatcgatTCAATTATTCCCGGAGTTTTGTTTGAGAAATCTTTC
AATGTTGAagctttcatttttcattttttaaaggtAAAAATCTATACATG
TAAAACTTAAAAATAGAATATATTGAAAACTCGAATTCAAAAAGATGTTT
GGCAGAGTATTGATGAGAAAACCAACAAACTTGACACGAGAATTAAAACA
CATTGGAAACGTTGGTTCCATCAGATGCTCCTCATCGAAATATCCAATCA
GTCGATACCCGATCGTTGACGATGGAGATGTGGAAAACATGCCAGAGGAT
ATCAAACAACGAATGCTGGATGTCAAAGAAAAGGTATTGTGAACTTTTTT
ATCCGTTCAACTCGTTTATATATCTACCCATTCATTCAGAGCAATGATTG
AGAATGGTTGTTTTGGGGTGTTTTTCCCACCTCACAATCTGTTCTTCAAT
TTATGGTTTGATGAGAAAGTTCCAAACTTGCTAATAATAAATCATTCATC
TTATTTTCATTAAGCTTTTTGATTTGTTGGCTTTCTAAATTAATTTATGA
TTCTTCAGACAAACTTTTATTTTGACGATGTCCTGTCTTAAAAAAACACC
TATTTTATAGAGTACCTTCTTACCAAACGTGTTCAAAACATTGGCGCATC
GTCCAGACGAATTTCGATCATTCTTCAATTATTATGACGTATTGATGGAG
GAAACATCTCTCCTTACCAAGGCTGAAAAAGAAATGATCGTTGTAGCTAC
AAGCACCATTAATAACTGTAATTACTGTCTAGCATCGCATGGTGCTCTAT
TGAGAATCTACTCCAAGAATCCACTCCTTGGTGACCAAGTCGCTGTCAAT
CACCAACATGCTGATATCACAGACCGTCAAAAGAGAATGTTAGATTTTGC
CGTTTTGGTAGCTAAGGGACAACCCATATCTGATGAAGAGTTTAAAAACA
TGAGGGAATCTGGTTTTTCGGATCAAGAGATTTGGGATATTGGAGCCATT
GCAGCTTTCTTTGCTTTGAGTAATCGGATGGCACACTTGACCAATATGAG
ACCAAATGATGAGTTCTATTCGCTTGGACGCATCcccaaagataaaaagt
gaacTTACTTATAAAGTGGTGGTCGTCCTATAGAGCAttatttaaattga
aaataaaatgatgaTATTGATGTTTTCACTTTATGTCTTTCATTTGAAAA
GGTTATGTATGCTGGAGAAAATTGATTTAATAGGGAAAATGATTTATTTG
TTCAACTAATTATTTGGTCAATTCTTGGGATGCTGAATCTTTCAACATGG
ACGTGTTTTgataatgaaattgaaaaattgtttttttgtgattttggtgT
GATTACCTCTTTCTTCAATCCTTTATGGCTTGACATTGATTAAATTATAT
TCAGCATGGTGCTATTCTGACGTGTATGTTGACCGGATTTTTTCAGTTTA
CTCTGACTTTGTGATTGGGTTGTTTTTGGGCTATGCTCGGGGACATTTTT
ATCTGTCCAAACCAACCAGCAAATTTCGAatagtgaaataaaaaaaaaat
ttgtaaataaaatagTGTTTCTGCATTCAATTTAATTACTGATTAGATTA
GTCATACGTTTTCAAGTGTGTAAAAGCATTTCTAGTCATTTATGGTTCCA
CGCCAATTTGTTTTGGTAAAATTCGCTGTCTCATTATCACTGCACTTGCT
TTTGAGTCTGGGATTGACGTCTACACACATTATTATATCTAATTCATAAG
TACCTTTATAAGCATAAAACCAAGTCCACTGACTCGTGTTTGGTGGTCAT
TTTTCATTACTCTGACTTTTTTCAAAGCACCTAAAAGCTGAAAAACCATC
AAGCTTAGGACAAAGCTTATCTGATTAGGATCCATTTTTTAATTATCAct
aaatgaattttttgaatatCATTACAATTTTTTGTATTGATTTTGAGACC
TTTGAAATTGCTTATAAAGAGATGAGAGACAATCTAACAAAGTTTGGCTA
TACAAATAGGTGATTCTTATTTTGTAAATTGACGCGTCTGTGTTCTGTTG
TGTCATTTTGTTGACAcattatttatttactttcatTCGTAAAACAGTCA
CTTGTTGAGCTCGAAAACCGACACCCCCTTTTTCTCTTGATAAATTGTTA
ACTTTCATTGACACTTTCCCTTCCatgtacaaaaacaaaaaaaaatgaat
tttattaaaAGGACACTCGACGAACTTGATCATTTTTGTTGTCAACTTGG
TGCATCGTATTTTTGGTAGAATTTATATCgtgttatttgattttttcagt
CTCTATTTTGTAGTTATCACAAATTTTGTTAGTGGACCCTGCTTTATATG
TATCTCGATCGATTTTATGGTTTCTGAGTCAAAGGAAATCTAAATTGTAT
ATCTATGGATAAAGGTTTTCTGGTTATTCTTTATAAAGActtctttaaaa
cttttttttcatttcatagtAGATTCAGAACCATTTTAAGATTATAAAAT
CATATGCATCCATCTAAGTTGAAACTATTCAGTGCGAATTTTTGTTCATC
TTTTAATTATAATTATGTCCCCCATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029594XLOC_029594Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046354-exon-scaffold_109-1491911889:74493..74586TCONS_00046354-exon-scaffold_109-1491911889:74493..74586Clytia hemisphaericaexon
TCONS_00046354-exon-scaffold_109-1510915933:74493..74586TCONS_00046354-exon-scaffold_109-1510915933:74493..74586Clytia hemisphaericaexon
TCONS_00046354-exon-scaffold_109-1575043694:74493..74586TCONS_00046354-exon-scaffold_109-1575043694:74493..74586Clytia hemisphaericaexon
TCONS_00046354-exon-scaffold_109-1491911889:75804..75959TCONS_00046354-exon-scaffold_109-1491911889:75804..75959Clytia hemisphaericaexon
TCONS_00046354-exon-scaffold_109-1510915933:75804..75959TCONS_00046354-exon-scaffold_109-1510915933:75804..75959Clytia hemisphaericaexon
TCONS_00046354-exon-scaffold_109-1575043694:75804..75959TCONS_00046354-exon-scaffold_109-1575043694:75804..75959Clytia hemisphaericaexon
TCONS_00046354-exon-scaffold_109-1491911889:77407..77887TCONS_00046354-exon-scaffold_109-1491911889:77407..77887Clytia hemisphaericaexon
TCONS_00046354-exon-scaffold_109-1510915933:77407..77887TCONS_00046354-exon-scaffold_109-1510915933:77407..77887Clytia hemisphaericaexon
TCONS_00046354-exon-scaffold_109-1575043694:77407..77887TCONS_00046354-exon-scaffold_109-1575043694:77407..77887Clytia hemisphaericaexon
TCONS_00046354-exon-scaffold_109-1491911889:78094..78247TCONS_00046354-exon-scaffold_109-1491911889:78094..78247Clytia hemisphaericaexon
TCONS_00046354-exon-scaffold_109-1510915933:78094..78247TCONS_00046354-exon-scaffold_109-1510915933:78094..78247Clytia hemisphaericaexon
TCONS_00046354-exon-scaffold_109-1575043694:78094..78247TCONS_00046354-exon-scaffold_109-1575043694:78094..78247Clytia hemisphaericaexon
TCONS_00046354-exon-scaffold_109-1491911889:78408..78514TCONS_00046354-exon-scaffold_109-1491911889:78408..78514Clytia hemisphaericaexon
TCONS_00046354-exon-scaffold_109-1510915933:78408..78514TCONS_00046354-exon-scaffold_109-1510915933:78408..78514Clytia hemisphaericaexon
TCONS_00046354-exon-scaffold_109-1575043694:78408..78514TCONS_00046354-exon-scaffold_109-1575043694:78408..78514Clytia hemisphaericaexon
TCONS_00046354-exon-scaffold_109-1491911889:78870..80675TCONS_00046354-exon-scaffold_109-1491911889:78870..80675Clytia hemisphaericaexon
TCONS_00046354-exon-scaffold_109-1510915933:78870..80675TCONS_00046354-exon-scaffold_109-1510915933:78870..80675Clytia hemisphaericaexon
TCONS_00046354-exon-scaffold_109-1575043694:78870..80675TCONS_00046354-exon-scaffold_109-1575043694:78870..80675Clytia hemisphaericaexon
TCONS_00046354-exon-scaffold_109-1491911889:80953..82919TCONS_00046354-exon-scaffold_109-1491911889:80953..82919Clytia hemisphaericaexon
TCONS_00046354-exon-scaffold_109-1510915933:80953..82919TCONS_00046354-exon-scaffold_109-1510915933:80953..82919Clytia hemisphaericaexon
TCONS_00046354-exon-scaffold_109-1575043694:80953..82919TCONS_00046354-exon-scaffold_109-1575043694:80953..82919Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_109supercontigscaffold_109:74493..82919 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.68366	2.66018	1.97861	2.61193	4.4244	1.76293	2.39586e-07	8.45187e-08	0	0	0	9.98896e-11	0.111635	0.639369	0.126141	0.000384887	0	0	0.4505	1.25288e-05	2.27551	2.70657	0.0821917	0.00213114	0.69441	0.0756983	0.901067	1.68709	1.3256	0.000630136
Blast
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BLAST of TCONS_00046354 vs. Swiss-Prot (Human)
Match: LIN9 (Protein lin-9 homolog OS=Homo sapiens GN=LIN9 PE=1 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 1.580e-98
Identity = 192/486 (39.51%), Postives = 294/486 (60.49%), Query Frame = 2 
Query:  278 KRPRLEGLQDNQPWNQYSPLKRYE-----PRSLSKDFSQEQLESMNKNYTSIKNTLKQSSGRRWAYYEFFYSNIDRALLLGCNDFEICLKQMFQDLKTRMLTRRQWSNIRRLMGKPRRYSAAFLKEERAILEEKRKKIRYLHQLKGFEVTDMTQFKDLPEEVPTPMVIGTKVTAKVPDYLQKDGLNLFTGSIDAVDNVNNTFRIIFDREGIGSHSIPDTDV-SSEEYESMNLQLFVVKERPKVAESTNQKVDKSDANCSPT--------RLRLKEELRKGSGGTFGGFPVHFLLQLTTLSKAIALKKEYVKKLKEMNSKVELAQPFGY-IKKDFQRDYAFVVLELDKINTEMNDIFDNIQHYIHTDAPHMG--ALDQSLNVRNECNEKAMDLIEQS-----QCILHDEHMLTLTKQFTSLMLQINHVAESEEPCSAKLSLLDSAVEEIKETLHPSNKKLFEDQVEISIAFLKNNLQNEKSSLSAFS 1669
            KR RL   +D++  N  SP KR +     P+  +   S    ++  K    ++N LK     +W  YE+FYSNID+ L  G NDF +CLK+ F +LKTR LTR +W  IRRLMGKPRR S+AF +EER+ L++KR+KIR L Q K   V D++QFKDLP+E+P P+VIGTKVTA++      DG  LFTG IDAVD +N T+R+ FDR G+G+H+IPD +V S+E +E+M +  F  K+RP     T  ++  +    SP         +   + ++      T GGFPV FL+Q+T LSK + +KKE++KKL+EMN++ E  + +   I  +FQR YA +VLEL+++N ++N +   +Q Y +  AP  G    DQ  ++R  C E+A +++  +     Q  + +E++  L  + T+++LQI  +AE  +  S +   L  ++ +IK T+  SN   F++ VEI +A +++ L ++  +L AF+
Sbjct:   59 KRSRLFSDEDDRQINTRSP-KRNQRVAMVPQKFTATMSTPDKKASQKIGFRLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLKTRKLTRVEWGKIRRLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRK---VADVSQFKDLPDEIPLPLVIGTKVTARLRGV--HDG--LFTGQIDAVDTLNATYRVTFDRTGLGTHTIPDYEVLSNEPHETMPIAAFGQKQRPSRFFMTPPRLHYTPPLQSPIIDNDPLLGQSPWRSKISGSDTETLGGFPVEFLIQVTRLSKILMIKKEHIKKLREMNTEAEKLKSYSMPISIEFQRRYATIVLELEQLNKDLNKVLHKVQQYCYELAPDQGLQPADQPTDMRRRCEEEAQEIVRHANSSTGQPCVENENLTDLISRLTAILLQIKCLAEGGDLNSFEFKSLTDSLNDIKSTIDASNISCFQNNVEIHVAHIQSGL-SQMGNLHAFA 535
The following BLAST results are available for this feature:
BLAST of TCONS_00046354 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LIN91.580e-9839.51Protein lin-9 homolog OS=Homo sapiens GN=LIN9 PE=1... [more]
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