TCONS_00046361 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046361
Unique NameTCONS_00046361
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1240

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046361 ID=TCONS_00046361|Name=TCONS_00046361|organism=Clytia hemisphaerica|type=transcript|length=1240bp
CTATTCCAGTCTCCGGTTGCAGGTTCTTATTAAAATCGATAGGGAGCTGG
GGAGAAGGATGAAAAGAGTAGAGATATATAGTTTAATAATTATCTCAAAT
TCTTTCTTTATGGAAAATCTTGTATTTCTAGAGTGTATAGACTCGGCAAG
TTTTTTGTGTCGAGAAGATGATGTTTGTTACTCACAAGAGGGAAGATTAC
TGTGTCCCAAGAAATGCAATGCTTGTGAATTCGAGTTTTTAGAAAAAGGA
GGACCTCTCAATCCAAACCCCTCACCACAATCAAAACAACCTCAGTGGTT
CCCTTCCTCATCCAACCAAACAGAGGAGGGTCGCGGCAACAATACCACCC
CATTatcttcaaatcaaaataagGAGAATTCAGAGAACAAAACGACCAAG
CAACCAAACAACGAATGCACCAGATAATTCAAAGTCAGAGAGCAAAAATC
CAGAAGATGTCCAAAAAGATTGTCTAGTCGCCCACAACGAATATCGTGCC
AAACATGAAGATACACCCTCGTTGGAATGGGATGAAGATATCGCGATGGG
TGCTAAAGAATGGGCGGAAAATATGTTGGAGACGGGTATGAGACATTCTT
CACAAGAGGAGAGGAAAAATGCTGGAGAAAATTTATACTACGATGCAGGA
ACTGCCAGTGTTGGTGGAACGCCCTGTCAAAGGGCGTCTGATTCGTGGTA
CCGCGAGGCTCTGCGATACAATTTCAATACAGGAAAAGGAAGTGGTGTTC
TGCATTTTACTCAAATGGTTTGGAAATCAACAACAAAGGTCGGTTGTGGT
GTCTCCAAAGGTCAGGTTCGAGGGATGGAAACTACCTACGTTTGTTGTAG
ATACCAACCTGCTGGGAACATGATTGGTTCAGAGACGAAGAATGTGATGA
AATTGAAGGATGGTATGAGTGTTCAAGATGCTGTCAAAGAAGACCCATGG
AAAACAAACAAACGAAACTCCCTTCacaagaatgcaaaaaaaatgacaaa
aagtggaaaaagaaatgttttgtaAATTATGAAAGATGATTTTTTATCAT
GCAGGCACTTTCTATTACAGTGGAGTGTCCATAATGTGAACTTCTATATA
ACTGGAACGAATTTGCgctccccgtgcgtgttcgaggccccccccccctc
ttgcACGATTGAATTGCCCATTAGAATTTTTATTTGtactttattttgaa
aaaatttagaatatgaATTTCATGATAAAGTTCGTCAAAC
Run BLAST on NCBI

protein sequence of TCONS_00046361-protein

>TCONS_00046361-protein ID=TCONS_00046361-protein|Name=TCONS_00046361-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MGAKEWAENMLETGMRHSSQEERKNAGENLYYDAGTASVGGTPCQRASDS
WYREALRYNFNTGKGSGVLHFTQMVWKSTTKVGCGVSKGQVRGMETTYVC
CRYQPAGNMIGSETKNVMKLKDGMSVQDAVKEDPWKTNKRNSLHKNAKKM
TKSGKRNVL
Run BLAST on NCBI

transcript from alignment at scaffold_109:122801..124964+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046361 ID=TCONS_00046361|Name=TCONS_00046361|organism=Clytia hemisphaerica|type=transcript|length=2164bp|location=Sequence derived from alignment at scaffold_109:122801..124964+ (Clytia hemisphaerica)
CTATTCCAGTCTCCGGTTGCAGGTTCTTATTAAAATCGATAGGGAGCTGG
GGAGAAGGATGAAAAGAGTAGAGATATATAGTTTAATAATTATCTCAAAT
TCTTTCTTTATGGAAAATCTTGTATTTCTAGAGTGTATAGACTCGGCAAG
TTTTTTGTGTCGAGAAGATGATGTTTGTTACTCACAAGAGGGAAGATTAC
TGTGTCCCAAGAAATGCAATGCTTGTGGTGAGATACTCAACTTAAGGTTC
TTTTACTGCCCATACCTAGGTGAATAGAGgaaaaaaaactgtaaaaaaag
aaaatattttccactAGTAAGAGTTTTAGGTCCTGAATGTGTTCACTGcg
taagaaaacattttttcatcatCTATAAAAACCAAACTTGTAACCTTTTA
CATCAGTATGGTTTTCCTGAAAACCCTTGCGATTTTACCAGGCCAAAatg
caaaatcaaaaaagttgaacGATTGATTCTTGGGTACATGATAGCATATA
CAAATCCTTAATTCTTTTGTTGACTTTTCTCGGTCAATTCACTGTTGTTA
AAAGTATCTTTTACTTTTGCTTTTAGAATTCGAGTTTTTAGAAAAAGGAG
GACCTCTCAATCCAAACCCCTCACCACAATCAAAACAACCTCAGTGGTTC
CCTTCCTCATCCAACCAAACAGAGGAGGGTCGCGGCAACAATACCACCCC
ATTatcttcaaatcaaaataagGAGAATTCAGAGAACAAAACGACCAAGC
AACCAAACAACGAATGCACCAGATAATTCAAAGTCAGGTAAAAAGTGCGA
CAGGCATTTTGCGATTGGATGTGTTGTTAAGAGGCCTGTTAGAATCATTT
ATGGTATACCATAATACCTGAAGATGAAAATATAATTCAActtattttta
tctttcagGCTGGTTCCTATACTTCTTAACATAAACATTAAGGCTTTAAA
AGAgacttcttttcttcttttgtcaCTCTACTAGAGAGCAAAAATCCAGA
AGATGTCCAAAAAGATTGTCTAGTCGCCCACAACGAATATCGTGCCAAAC
ATGAAGATACACCCTCGTTGGAATGGGATGAAGATATCGCGATGGGTGCT
AAAGAATGGGCGGAAAATATGTTGGAGACGGGTATGAGACATTCTTCACA
AGAGGAGAGGAAAAATGCTGGAGAAAATTTATACTACGATGCAGGAACTG
CCAGTGTTGGTGGAACGCCCTGTCAAAGGGCGTCTGATTCGTGGTTCgtt
gaagtttttatttttaatataaCGCATTGAAATTTATGATATTTTACTTA
CACGAGGGATGCCAGTTGGGCTGTGATATCATCTTTACTAAGTTTTGTGG
AGTCAAAGTTGTAATCAAAATTACCCGCAAAATTAACGAAGATTTTGTTA
TATCAATTCTAGCTGACATTTTCCCTTGATGGAAATAAttccattaattt
ttttctttttaaaagccTTGTTATTGAGCACAGGGTTTTACATTACATAT
ACAGAAAAACTTAAAGGAATCTGACTTGACTTTCTTTTGCTTTCATGTCG
AAGCAGTTTTAAGTTTCATCAAATTAGAATTGTGCTTGAGAAAATAAAAC
AAGGAATAAATTTACTTTCAGGTACCGCGAGGCTCTGCGATACAATTTCA
ATACAGGAAAAGGAAGTGGTGTTCTGCATTTTACTCAAATGGTTTGGAAA
TCAACAACAAAGGTCGGTTGTGGTGTCTCCAAAGGTCAGGTTCGAGGGAT
GGAAACTACCTACGTTTGTTGTAGATACCAACCTGCTGGGAACATGATTG
GTTCAGAGACGAAGAATGTGATGAAATTGAAGGATGGTATGAGTGTTCAA
GATGCTGTCAAAGAAGACCCATGGAAAACAAACAAACGAAACTCCCTTCa
caagaatgcaaaaaaaatgacaaaaagtggaaaaagaaatgttttgtaAA
TTATGAAAGATGATTTTTTATCATGCAGGCACTTTCTATTACAGTGGAGT
GTCCATAATGTGAACTTCTATATAACTGGAACGAATTTGCgctccccgtg
cgtgttcgaggccccccccccctcttgcACGATTGAATTGCCCATTAGAA
TTTTTATTTGtactttattttgaaaaaatttagaatatgaATTTCATGAT
AAAGTTCGTCAAAC

Coding sequence (CDS) from alignment at scaffold_109:122801..124964+

>TCONS_00046361 ID=TCONS_00046361|Name=TCONS_00046361|organism=Clytia hemisphaerica|type=CDS|length=960bp|location=Sequence derived from alignment at scaffold_109:122801..124964+ (Clytia hemisphaerica)
ATGGGTGCTAAAGAATGGGCGGAAAATATGTTGGAGACGGGTATGAGACA
TTCTTCACAAGAGGAGAGGAAAAATGCTGGAGAAAATTTATACTACGATG
CAGGAACTGCCAGTGTTGGTGGAACGCCCTGTCAAAGGGCGTCTGATTCG
TGGTACCGCGAGGCTCTGCGATACAATTTCAATACAGGAAAAGGAAGTGG
TGTTCTGCATTTTACTCAAATGGTTTGGAAATCAACAACAAAGGTCGGTT
GTGGTGTCTCCAAAGGTCAGGTTCGAGGGATGGAAACTACCTACGTTTGT
TGTAGATACCAACCTGCTGGGAACATGATTGGTTCAGAGACGAAGAATGT
GATGAAATTGAAGGATGGTATGAGTGTTCAAGATGCTGTCAAAGAAGACC
CATGGAAAACAAACAAACGAAACTCCCTTCacaagaatgcaaaaaaaatg
acaaaaagtggaaaaagaaatgttttgtaAATGGGTGCTAAAGAATGGGC
GGAAAATATGTTGGAGACGGGTATGAGACATTCTTCACAAGAGGAGAGGA
AAAATGCTGGAGAAAATTTATACTACGATGCAGGAACTGCCAGTGTTGGT
GGAACGCCCTGTCAAAGGGCGTCTGATTCGTGGTACCGCGAGGCTCTGCG
ATACAATTTCAATACAGGAAAAGGAAGTGGTGTTCTGCATTTTACTCAAA
TGGTTTGGAAATCAACAACAAAGGTCGGTTGTGGTGTCTCCAAAGGTCAG
GTTCGAGGGATGGAAACTACCTACGTTTGTTGTAGATACCAACCTGCTGG
GAACATGATTGGTTCAGAGACGAAGAATGTGATGAAATTGAAGGATGGTA
TGAGTGTTCAAGATGCTGTCAAAGAAGACCCATGGAAAACAAACAAACGA
AACTCCCTTCacaagaatgcaaaaaaaatgacaaaaagtggaaaaagaaa
tgttttgtaA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029595XLOC_029595Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046361-proteinTCONS_00046361-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046361-exon-scaffold_109-1491911889:122801..123027TCONS_00046361-exon-scaffold_109-1491911889:122801..123027Clytia hemisphaericaexon
TCONS_00046361-exon-scaffold_109-1510915933:122801..123027TCONS_00046361-exon-scaffold_109-1510915933:122801..123027Clytia hemisphaericaexon
TCONS_00046361-exon-scaffold_109-1575043694:122801..123027TCONS_00046361-exon-scaffold_109-1575043694:122801..123027Clytia hemisphaericaexon
TCONS_00046361-exon-scaffold_109-1491911889:123377..123587TCONS_00046361-exon-scaffold_109-1491911889:123377..123587Clytia hemisphaericaexon
TCONS_00046361-exon-scaffold_109-1510915933:123377..123587TCONS_00046361-exon-scaffold_109-1510915933:123377..123587Clytia hemisphaericaexon
TCONS_00046361-exon-scaffold_109-1575043694:123377..123587TCONS_00046361-exon-scaffold_109-1575043694:123377..123587Clytia hemisphaericaexon
TCONS_00046361-exon-scaffold_109-1491911889:123785..124043TCONS_00046361-exon-scaffold_109-1491911889:123785..124043Clytia hemisphaericaexon
TCONS_00046361-exon-scaffold_109-1510915933:123785..124043TCONS_00046361-exon-scaffold_109-1510915933:123785..124043Clytia hemisphaericaexon
TCONS_00046361-exon-scaffold_109-1575043694:123785..124043TCONS_00046361-exon-scaffold_109-1575043694:123785..124043Clytia hemisphaericaexon
TCONS_00046361-exon-scaffold_109-1491911889:124422..124964TCONS_00046361-exon-scaffold_109-1491911889:124422..124964Clytia hemisphaericaexon
TCONS_00046361-exon-scaffold_109-1510915933:124422..124964TCONS_00046361-exon-scaffold_109-1510915933:124422..124964Clytia hemisphaericaexon
TCONS_00046361-exon-scaffold_109-1575043694:124422..124964TCONS_00046361-exon-scaffold_109-1575043694:124422..124964Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_109supercontigscaffold_109:122801..124964 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.68198	3.2885	1.75329	0.838599	0.324836	0.25669	1.1945	0.952607	0.405965	0.287345	0.871574	0.320846	0.205971	0.023767	0.937906	1.1533	1.57576	1.56215	0.951071	0.995227	2.82799	3.21318	10.3372	5.5599	0.0369456	0.0659461	1.22679	1.81283	4.6978	4.98088
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001283Allrgn_V5/Tpx1
IPR014044CAP_domain
IPR018244Allrgn_V5/Tpx1_CS
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005576 extracellular region
Blast
[Close]
BLAST of TCONS_00046361 vs. Swiss-Prot (Human)
Match: GAPR1 (Golgi-associated plant pathogenesis-related protein 1 OS=Homo sapiens GN=GLIPR2 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.952e-17
Identity = 59/160 (36.88%), Postives = 85/160 (53.12%), Query Frame = 3 
Query:  432 KSESKNPEDVQKDCLVAHNEYRAKHEDTPSLEWDEDIAMGAKEWAENMLETG-MRHSSQEERKNAGENLYYDAGTASVGGTPCQRASDSWYREALRYNFNT-GKGSGVLHFTQMVWKSTTKVGCGVSKGQVRGMETTYVCCRYQPAGNMI--GSETKNVM 899
            KS SK       + L AHNEYR KH   P L+  +++   A++++E +  T  ++HS +  R   GENL +    AS   T  +  +D WY E   YNF   G  SG  HFT MVWK+T K+G G +        +++V  RY PAGN++  G   +NV+
Sbjct:    3 KSASK---QFHNEVLKAHNEYRQKH-GVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAW----ASYDQT-GKEVADRWYSEIKNYNFQQPGFTSGTGHFTAMVWKNTKKMGVGKASAS---DGSSFVVARYFPAGNVVNEGFFEENVL 150
The following BLAST results are available for this feature:
BLAST of TCONS_00046361 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GAPR12.952e-1736.88Golgi-associated plant pathogenesis-related protei... [more]
back to top