TCONS_00046368 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046368
Unique NameTCONS_00046368
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2568

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046368 ID=TCONS_00046368|Name=TCONS_00046368|organism=Clytia hemisphaerica|type=transcript|length=2568bp
CTAACATTGAAAATAATCTgcgattttcagaaaaatgacAAGTTATAAGC
CACGACGAACAAAGgCTAATCACAGTGACTTATTGCTACCAGACGAAGAC
AATAGGGAAATGGACCAATTGAAAAACAGGATCGATACACTTCTCGATGA
ACAAGAAAAGAAACGACCTCAAGAAGATAGTCTCTCCGGCTTGAAAGCAA
GGCTTCGAGAAAAAGCATCAGAATGCAGTCGTTTGAAGATTCAGTTAGAA
GACATGCGACAACAACAAGAAGCTAAAGATAACACTATGATCAAAATACA
GGAACAAATACAACGCCTATTTGAGGAGAACGAGCTATTACGTCAGCAAT
TGGCCAGCGCCACCGCAATGCATTCCAACGGCTCCACCCCGCACATCGCT
ACACCACGAATAACGAATGGTATGGTACCGCAAACTCCTGAATCAGTCCG
CTCGGCTTCCGTTCAAAAATCCAAATCCAAAGAAATCCTACAGATGAAAA
GCGGATTGAAATCTGCAAGTGAACCAAATTTAAtaCGAGATGGAAACAGA
AGTATTGGACTAGTTTCGCCACCTTCGCTTTCAGTCAATGGAGATGAAGC
CATATACAGACCTTTTCGGCAACTTATATCAGACCAACCATTCACCACGT
GGTCACTTGATCAAGTGCAAGACTGGATGCGAGATGAAGGCCTAGAAGAA
TACGCCAATAATTGCTCTAAATGTATCAAAAATGGTGAAGATCTCATCAA
ATTCACTTCtgcagattttgaaaaaagtctcgGCATTTCAGATCCCATGA
TACGGAAGAAATTAAATCTAGCCCTCAAGGCAATAACATCGAACAGTCCA
GATTATGCAGGCCGACTCGATCATAATTGGGTGGCACGTTGGCTTGACGA
CCTTGGGTTACCGCAATACAAACAGAATTTTTATATACATAAAGTAGACG
GACGTGTTCTCGTTAATATGACACTGgaTGATATCCTTCAACTAAAAGTT
TTCAATTTACTACATCATGCAAGTTTAAAGAGAGCTGTACaatttttgag
ACACCAGAAATTCCATCCACAATTTTTACGAGAAGTAGcgaaccaatcag
aagagaGATGTGATCACGTGATGTTGTGGACCAATCAGCGTATAATGCAT
TGGTTACGCTCTGTGGACCTGGCGGAATACGCCCCAAATCTACGTGGGAG
CGGTGTACATGGAGGACTTATGGTGTTGGAGCCTCGTTTCAATGCTGAAA
CATTAGCAAACCTTTTGTCTATACCAAACAACAAGTCGTTGCTAAGGCGT
CACGTTGCTACGCAATTCATGACGTTATTAGGCGACGCATGTCAACGACA
AAAGGAAATGACTGCAAAGACTGCCGATTTTGTACCCCTAAATGGCTCAG
AAAAACATAAGttaCGTAAAAAAGGTGGGTTAAATTTCGGAACACTGAGA
CGTCGCAAATCAGAGACGGACTTAGAGACGTTGATTTGTCCCATGGAACT
TGACGTGTCGAATATCTACTCTCCACCGCCGGCTCTCGATCCCGACAACA
TGTTTGATTTGTCGGAAAATACTTCTCTCTCACCCTCCTTCACAAATGAT
AATGCAAGCAATTCAACTAATGACACAAGTTGTACTGGACCTCGGATTGC
TGAATTGTCTCAAGAAATCGACCAAATGACGTCCATGCTTGGAAGTGACG
ACAACCAATGAAATTGCGAGACGAAGTCACGTGGTCGGTCAAATTACGGT
GAAGATTGAGTGGTTTGAAATGAAgaacaatgaaaaatgaaaatgaactt
tttatgaagcttttgtttcaatcttttttcttatgttttttttttgaaat
gcacACATCACCAAATTACGTGTTctgtttttgataattatttttcGCAT
AACACTAAATTTTATATTGCCTTATTAAATCGGCGTgccctttaaaattt
tgaagctgACACAGGACAAAAATGAGATGCGTTGTGAATGACCTGCATTA
CCTAGGTGTATGTAGGCCCTGTTccaatttttaaggtcaaaaACCTGTTA
CTAAGTATAGTATATTTTAGAAGGAACAAAAGGAAAAATTTCCAAACGAC
CCGCTGGAGTCCGTGCAAGGATGTGACggcctttaaaggttttataaaAG
CCGGTCAGTTACTCTTTGAGATTTTGCAGGTTTGCCTGTGCAATTTTTTC
TCCAGGTAACTGCTTaataaatttaaattctttttttttacgaTCTCAGA
TTAATTATGACTTTATAATGATATATTCCCTTTCAacgaaagatttttta
attatcAAACAAACATTCTTCCTTAATAATCTTTATTTGTAAATAGCAAT
AATATGAAAAagataaaccatatattttgataaaaaacatcTAATCTATA
AACATTATGTCTTTTCTTCTGTGTTTTACTATCAATACACTTTTGAAGTC
AAGCCTAACTATGCTGGTACCTGAAAGAGACGCTTTCATCCAATCTGAGA
CCGAGTGCTTGTGCTGCTGCTGCTGCTGAcattatctggtaccagatgtg
gaaatatgctacgacacg
Run BLAST on NCBI

transcript from alignment at scaffold_109:153846..163508+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046368 ID=TCONS_00046368|Name=TCONS_00046368|organism=Clytia hemisphaerica|type=transcript|length=9663bp|location=Sequence derived from alignment at scaffold_109:153846..163508+ (Clytia hemisphaerica)
CTAACATTGAAAATAATCTgcgattttcagaaaaatgacAAGTTATAAGC
CACGACGAACAAAGGTAATACCCAGGCTTATGCATTTTAAGTTTTGATGT
TACACAACTATCTTGTACACTATACTTATGATTTTTGTCTCTTTCAAAGC
AAGCTGATATTATAGTACGTGATGTCTGTGTGAGTTATTATGTTTGAACt
ttcaaagcaaaataaaaaaactcgaATTCTTCGAGTTCTACTATTTGTTT
GGTTTTCAAGGTCTATTTACCTTAAAATAGTATGTAAATATTGTAAATAA
TTATAAATGTTGTAAAAGAGGAGAGGTTTTgagatgttattatttttgag
GTGATTTCATACGTGTTAGTTTAAATTTTAAGTATTGAAGAGCTGTCCTG
AGTTAATTTATGTAGGTGATATAGATGCCAATTTGTCAAAGTGAAACCTG
TAATACATAGTTTCATagtcttgggttttgatgaaccaaaagcaaggggg
gtgttaaaagtatgaAGTATGACTTACCTAAAGGGGGATTGCCAGTTAAG
GGGGgtcttcttacctaagggggggtcttcttagataAGTTAGATAAgat
cttccttgaattatgcaaaatttcaatcttttatttatactgattttcta
agggaaaattttaaatgaatttcctaagggggggggggtcctcttaccta
agggggggtcttcttagataAGTTAGATAAgatcttccttgaattatgca
aaatttcaatcttttatttatactgattttctaagggaAAATTTTAATgg
aatttcctaaggggggggggtcctcttacctatgggggggtcttgacccc
tctagaaactatgttAATAAGAATTTTTGTTTGTATCTTTGACTAGACGC
CTCAAATCGTAAACGAAAGAGAATAGAGAAGACAGGCTAATGAAATATTT
AAGTCGGACCAGCCTATCTATtccctttcaaataaaaaatagaatatGTC
CACATTATTTGACGACAACAGCCTGCAAACCAACAAGCTTTATAAATACA
TAATTTATATGAACAGGATTTgtcttttttctcctttcaCGTTCGATGTC
AACGAATGCTCAAAGCTAGATTGATGACTACAGATAATGACGTGAAGTTT
TAAAGTCTTTGCTTTTCGGAGATTCTCATATGTTATAAAGATGTCGAGCT
TCTTTAGTTTAAATTCCATCCGCTTTTTATTGGTAGatatcattttttca
aattctttatttttcaatgcGATCATGAATGttcattttggcgggaattt
tatttttgggaGAAGGACTTGTTTGGTTGTTTCAAGAAGAAAAAGACTGA
CCAAAAATACGAGTAATAGACCAAAAGAAGGGNAGGACTTGTTTGGTTGT
TTCAATAAGAAAAAGACTGACCAAAAATACGAGTAATAGACCAAATGAAG
GGATTTTCTAAAGGCTCATTAAGAATTTCGAGatccaaatcaaaacattg
taGACGTGATGTGATTTTCTTATTCCATCCTTCATAATTACACATCTATA
ATTTGAGTGAATGAGTAGTCAGTTAAAAGATTACAAAAAGATAGATTTTA
TGTTAAGATAATGTTTAAAAACGACCGAGTGTTCTTATATTATCATTTTG
CACATTCGCGTAATTGATCTAAGAGACGCgtttaaagatttttgtgtTTG
AAACGCTAAACTCAAGCTTGTAAATGTATATATCTTCAATACTTCAGGAA
AGCGAGACATATGTCTGCTATCACATCAACTTACGAcaagttatttttct
ttataggCTAATCACAGTGACTTATTGCTACCAGACGAAGACAATAGGGA
AATGGACCAATTGAAAAACAGGATCGATACACTTCTCGATGAACAAGAAA
AGAAACGACCTCAAGAAGGTATGCTGATCTTGGGTGTCAGTTTTTTTAGG
GGAGGGGGCTGTCTAGAGGGAAAATATCTCAGCTCGATTATACATGAAAG
TGGGGCAGTTGTCTGGTTTGGACGTGTCTCATTTTTTGGGCAACAATCAG
CTTTCATTTCTTTAGTATGTACACTGAAATGTGGTTGAAAtggcatacac
gttttttttataagaacaaactatataataaaTTAAGGCTGCGCTGGATA
AAATGTTAAgatcaagttaagaacattttaaggctttgtggccttaaaaa
caccctatttcttggaaaatggtcaaaaatattcacaaaataaggtctaa
ataagaacatgtttagaacatttttaggctttaaactcaaaaagttaaga
acataagaaggcttcaaaaattttggatgttcttataaaaaaacgtgtag
tggtatagtggtcatcaTCCTTGGCTCCCGCCTGGGAGGCCCGAGTACGA
TACTCACCGTGTCACTACGATTCACTCGACAGGTGAACGTACCTTCACCC
GTGTCAACCCATGCTATGTGTGGGGATTCGGGTACCATTACTCTGGTATG
TGTGGGTAGGCTTGGCTCGACTCGAGTCGAGGCTCGgctcccagtgtcgt
tcgagttTCAAGATGTACAGCATGGCTTGGtagtgtctgtcagcgccgtg
attcctactctTTCTGGAGTAGAACCCATCCCAAATGCATTCGGAAGGCT
CGTATCTATCTATCTGTGGTTCAAATTTTGTTAGTTTTCAATGATGATAT
TTTTTCTCCATCTACCGTTCGCATGTCGAAGTGTTGTTTTTTGCtatcct
tttttacactttaCGATTAGCATAATGCTAATAGATTTTTCGCACCTTAT
ATTTTCATATAAACATACCTTGTAATTTCCTTATCAAATTTTCACCCAAT
GAATGGTCGTAAGTTTTAAATCCCTCTCAGTGATAATAAATAAGCTTGTG
CTAGATGTTTTTGTAACTACAGTATTTCGTTAGTTGGGTTCACGAGGAGA
AAAATATGGATGGAACTGATGATGGTAATCTTTTCTGCGTCTGCGCGTTG
AGTACTTTTCgttgatttcatcatttttgtaTTTAACCTAGCAGGTATTT
TGATCGAAAGAAGAATTTtcatgaatgtttttttttgtttctctttTCAG
ATAGTCTCTCCGGCTTGAAAGCAAGGCTTCGAGAAAAAGGTAGGAAATGA
TGATCATGATGGAGACTTATTCATACTGACATTGTATTTGACAAGAAAAT
CAATTCAGACATACTTCTATACTATCAGAATAGGATatttaatttgattt
gaatttctAAATAATACGTGGTTTAGAAAATTCGGCTGTTAGTACTAAAC
TATAAGACTGTCTCTCTAAACATCCTAGTTATTCCGATATAACGGAATAA
CCAGTCACGGCCAAAACTTTCAGGTTTTCAatgatcttttctttctttcc
taAAGAGGTTTATGTTTTGTTGAGTTACGTAATTTAAAGCATTATTGAAG
TAAACGTTTGAATGTGAAGAGGCGACCCTCCTTACGcgaatcgaacgttt
gcttccataacgACGGAAGTTatgtaacttaacaaaacacGTAAAATCTC
TATACCAAAAAGACGTTCAAAGATAAATATTTCCGATTTCCTACACCTCC
AGCATCAGAATGCAGTCGTTTGAAGATTCAGTTAGAAGACATGCGACAAC
AACAAGAAGCTAAAGATAACACTATGATCAAAATACAGGAACAAATACAA
CGCCTATTTGAGGTTTGTCTGCTATTGATTGCTTATTCAAATATTCCACT
GCACTGGTCAGAAGCAGGGGGGTCAGTATAGAAAGAAATCTagcaattca
aaaatttttattaccaAAAGAATAGTTTCAAGTTCGAAGAGACCCTCGTT
TTCAGCTTCAGAGTATCATGCCATTCAAGACATCATTTAACCATTTTCTT
ACGCAGCGTATATAGAGGCGCACCTCCcttctatatcataaaaaagaaaa
tctttaagacgaagtttaagtctatactatACATCGGTATTAAATAATAA
CAGTTTCAAATGAATCTCTTTCAAATCTCTTTCAAATGAATTCCTTCGTT
TCCATAGGAGAACGAGCTATTACGTCAGCAATTGGCCAGCGCCACCGCAA
TGCATTCCAACGGCTCCACCCCGCACATCGCTACACCACGAAGtaagtga
agaagaagaagatctaAGATTACTGTTTTGGTTTATCTTCGTTGACTTCT
TGACACCAGAAAAGAGCTTtataacaatgccttataagtGATAAAAAATC
TATGAATAAGGCTGGACTTGACAGCAAACCAAAATTTTTCCCCAGTCAGG
TCCAGTCTAACTCGAATCCTTGTAGTAAAATAAAGATTAAACATTGttaa
tagtttgttcttttattaGCTTTTTGAGCTCGTATTAATATACTGACTTT
GCTTTTCTCTTTCTCCTTCAGTAACGAATGGTATGGTACCGCAAACTCCT
GAATCAGTCCGCTCGGCTTCCGTTCAAAAATCCAAATCCAAAGAAATCCT
ACAGATGAAAAGCGGATTGAAATCTGCAAGTGAACCAAATTTAAGTAAGT
TTTTTTATCACTATAGACAGCTTTTAATGTTGATCTGAGGTTATGGATGC
ACTGTAGTAGCCTGTTCACAGAAAAGACTTAATGTCGGTTTCTGGCACTC
TTgtaactttcttttctttttatattttcagtaCGAGATGGAAACAGAAG
TATTGGACTAGTTTCGCCACCTTCGGTAGGTTAACCTAAAATTATATTCT
TTACTTTCCTACCGCGCGATTTCTTTATAAGTTTGTTGGTCTATCACACG
GTCTATTACGCGTTTGCTTTTTTATCGCAATTATGTCAAATCCTTGATAA
AGACTGCAATGACTTACTATAAACGACGTCAATATATGTAAAAAGTTTCA
GACGGAATGGAATCGAGAATTAAAACCTGTGTTCTTGACCGTGTTACAGG
CAAGGCTACGAACCACGATTGTTATTTCATTAGGTTTTACGACCCCACAC
AAAaccattttttcattatttctctATTGTACAATCAGTGATCAAAGCAg
atcaaagttcttccgtctcagacggatttccgtctcacagaaatttttgt
caaagttttccaCCTTAGTTAGAAATGGTTTTATTTAGCAAGAAATAGTG
ATTTTTGATAGATATTTATTTTCGCTGTATGATAggcattctaagaacat
tctgagTTGTTTTAATAAACAAATTTTAGTGCCTTTCTAGCCAATATagg
gggtaaaaaattttctgtctcatagaaaaaaaaatgcttTGACCACTGTA
CAATATATCAGATCAATACCTAGTTTGATTCATTTCCTGgcctttttttt
atcttcacgTTATTGCTTCTTTTTAGCTTTCAGTCAATGGAGATGAAGCC
ATATACAGACCTTTTCGGCAGTAAGATTCATTCCTTTTTCAATTTACGAC
ACTATTTCTTCTTTATCTTTTGGATTCTCTTACCTTAACTAATATAATGA
ACCGTTTGTGTTTTTATCCTATGAATCTATTATCATTGGCCTTGTTATAT
GAATAGAACAATACCTTTTGTATTCTTCTCTTTTCTTGTTTCTTGCTATC
AAGCCTCTGCCCCCTCCCTAGGAAAAGGAGTGCTAACTATGATGAACTAT
CTATCTTTCTTTAGACTTATATCAGACCAACCGTTCACCACGTNAGGAAA
AGGAGTGCTAACTATGATGAACTATCTATCTTTCTTTAGACTTATATCAG
ACCAACCATTCACCACGTGGTCACTTGATCAAGTGCAAGACTGGATGCGA
GATGAAGGCCTAGAAGAATACGCCAATAATTGCTCTAAATGTATCAAAAA
TGGTGAAGATCTCATCAAATTCACTTCtgcagattttgaaaaaagtctcg
GCATTTCAGATCCCATGATACGGAAGAAATTAAATCTAGCCCTCAAGGTA
CGGACTACTTAAATTAAAACTAAATGTCAAAAACACTTGTCACTGCCCGT
TCAGCCTCATTTTATCGAGCTATTTTTGAtaagaatgtttttatatgaac
tTCAAGAGATTTTCATCGAGAGGCTCAGTTCTCTAGGCGTGaattacttt
tgtttttttgctacAAAGTTTTTCAATATATGTTTTCCTTATTAAGGCAA
TAACATCGAACAGTCCAGATTATGCAGGCCGACTCGATCATAATTGGGTG
GCACGTTGGCTTGACGACCTTGGGTTACCGCAATACAAACAGAATTTTTA
TATACATAAAGTAGACGGACGTGTTCTCGTTAATATGACACTGGTAAGTC
ACATGCAAATGCGTTTTCAATAGAGTTCTTTTTCCAGTTTTTAGGAAGCT
GCCATACCATTCTCatataaaagatttttcttaatgattttctttgaact
ttttttactGAAGGTTGCACAAATCTATAGATAtagggtatataggtata
tagtaACTTTCTGCTTCTTAAAATTATTAAAACCAAAGATCAAAGTACAA
CTTTCACGACAACATTATGTATCCAACAACAAATTCTCATGTCAtttcaa
attaaactttttaggaTGATATCCTTCAACTAAAAGTTTTCAATTTACTA
CATCATGCAAGTTTAAAGAGAGCTGTACaatttttgaggtaaaattgCAC
GCTCAACGTTTAAACATTCAAATGATTTTATGATTCTAATATTTTAGTTA
TCTATTGAAAGTGAAACAAACTTATTGCCTCATTCGAAATCTTAGCACGT
ACAACCGCACGACAACAATtacaattcaaaaataattaaactAGTCATTT
GGATTTTCCGAATCCGAATCTTTgacaaaataattttcgaatgtAATCTA
GCATATCCCTCTTTTATTAGACACCAGAAATTCCATCCACAATTTTTACG
AGAAGTAGcgaaccaatcagaagagaGATGTGATCACGTGATGTTGTGGA
CCAATCAGCGTATAATGCATTGGTTACGCTCTGTGGACCTGGCGGAATAC
GCCCCAAATCTACGTGGGAGCGGTGTACATGGAGGACTTATGGTAAGACG
GATTATAATAAGGATTTATCATAAGAAGAGATTTTAAGTTCTCTGGTTTA
TGATTTCTACAATCATTTCATGCTAGAATATTGGTTTTAAGGtattgttt
ttaaatatgagtgatgtcgtttgcttactcgtcatatttaatttacaagc
tttttcacattgaattgataCAGATGTGGGgcaagattggccagaaagag
gaaaagaaaaacaattttgtttattcagcataatataacaatagcaagac
attGTCCTGATATGAGATATGTGtatgatatgaaacgggaacacctatgt
aaaaatgaaacctttaattggaaaatgaaaatgaaaattcctttCCTTTA
AAATCACATTCTTATTTTTCAGGTGTTGGAGCCTCGTTTCAATGCTGAAA
CATTAGCAAACCTTTTGTCTATACCAAACAACAAGTCGTTGCTAAGGCGT
CACGTTGCTACGCAATTCATGACGTTATTAGGCGACGCATGTCAACGACA
AAAGGAAATGACTGCAAAGACTGCCGATTTTGTACCCCTAAATGGCTCAG
AAAAACATAAGGTAAGAATCTTTCTGAGTGTTTGAAAAAGCAGAAGCTTG
CGGTTTGAAGATTTATTTtcgtacacattttttataagaacatccaaatt
tttcgaAGCTTTTAGATgctcttaaatttttgagttttaagaaaTGCTAA
AATGCTGTCaacttcttaatattttgaaagcCTTTTGTTTtggtagtttg
ttcttatgaaaaaatgctTAGCACTAATGCTATTCACCCATCTTGCGCTA
AGATCTATTTGCATaagatcagattttttttttttttgaagatagGGCGT
TCTCTTCCCAATAGATATCTAGATTCTGCCTCCTCTGAGAAACtactttt
ctttcatttttagttaCGTAAAAAAGGTGGGTTAAATTTCGGAACACTGA
GACGTCGCAAATCAGAGACGGACTTAGAGACGTTGATTTGTCCCATGGAA
CTTGACGTGTCGAATATCTACTCTCCACCGCCGGCTCTCGATCCCGACAA
CATGTTTGATTTGTCGGAAAATACTTCTCTCTCACCCTCCTTCACAAATG
ATAATGCAAGCAATTCAACTAATGACGTAAGTgtgaaacaaatatttttg
aggGGAGGGAGATCATGTCTTGTATAGTATAGTAAAGGGGTTACAACACA
TTTCAGGAGAGGTGATATATCACCACCGAGTCTAGGGAATAAATTTATCG
GTTTTATGGTTGACTTTCGGTGAAAAAAGGGATACAAAAGATGTTTGTCT
TGGTCTTCTATAACAAATTTGTCGGATTTTACCTACTGTTACTTTGTTAT
GCTTTTGACCTCTGCAACAACAAAATTATCTGAACaaaatcattattttc
attTACAGACAAGTTGTACTGGACCTCGGATTGCTGAATTGTCTCAAGAA
ATCGACCAAATGACGGTAAGGCTCTTCTTACATTTTCTTCTGTATTCgaa
taaaattttagtttttaatCTAGGGATTTAAGAGTGTTTGTACATTTGAC
GGGtattatatactttttttttgtctCGTGAGAAATTATGTTTCGCTCTC
ATGGCTCTAGTCTTCGATTATCAAGCACTTCCATGGTTTCCTCCAACATC
AATCACAAAGAAAACTAGGAAAACTATTGTTATGAAGATCGAAATTTCAc
tcaagttttttctttatttcattaAGTCCATGCTTGGAAGTGACGACAAC
CAATGAAATTGCGAGACGAAGTCACGTGGTCGGTCAAATTACGGTGAAGA
TTGAGTGGTTTGAAATGAAgaacaatgaaaaatgaaaatgaactttttat
gaagcttttgtttcaatcttttttcttatgttttttttttgaaatgcacA
CATCACCAAATTACGTGTTctgtttttgataattatttttcGCATAACAC
TAAATTTTATATTGCCTTATTAAATCGGCGTgccctttaaaattttgaag
ctgACACAGGACAAAAATGAGATGCGTTGTGAATGACCTGCATTACCTAG
GTGTATGTAGGCCCTGTTccaatttttaaggtcaaaaACCTGTTACTAAG
TATAGTATATTTTAGAAGGAACAAAAGGAAAAATTTCCAAACGACCCGCT
GGAGTCCGTGCAAGGATGTGACggcctttaaaggttttataaaAGCCGGT
CAGTTACTCTTTGAGATTTTGCAGGTTTGCCTGTGCAATTTTTTCTCCAG
GTAACTGCTTaataaatttaaattctttttttttacgaTCTCAGATTAAT
TATGACTTTATAATGATATATTCCCTTTCAacgaaagattttttaattat
cAAACAAACATTCTTCCTTAATAATCTTTATTTGTAAATAGCAATAATAT
GAAAAagataaaccatatattttgataaaaaacatcTAATCTATAAACAT
TATGTCTTTTCTTCTGTGTTTTACTATCAATACACTTTTGAAGTCAAGCC
TAACTATGCTGGTACCTGAAAGAGACGCTTTCATCCAATCTGAGACCGAG
TGCTTGTGCTGCTGCTGCTGCTGAcattatctggtaccagatgtggaaat
atgctacgacacg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029597XLOC_029597Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046368-exon-scaffold_109-1491911889:153846..153909TCONS_00046368-exon-scaffold_109-1491911889:153846..153909Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1510915933:153846..153909TCONS_00046368-exon-scaffold_109-1510915933:153846..153909Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1575043694:153846..153909TCONS_00046368-exon-scaffold_109-1575043694:153846..153909Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1491911889:155652..155763TCONS_00046368-exon-scaffold_109-1491911889:155652..155763Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1510915933:155652..155763TCONS_00046368-exon-scaffold_109-1510915933:155652..155763Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1575043694:155652..155763TCONS_00046368-exon-scaffold_109-1575043694:155652..155763Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1491911889:156946..156984TCONS_00046368-exon-scaffold_109-1491911889:156946..156984Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1510915933:156946..156984TCONS_00046368-exon-scaffold_109-1510915933:156946..156984Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1575043694:156946..156984TCONS_00046368-exon-scaffold_109-1575043694:156946..156984Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1491911889:157448..157557TCONS_00046368-exon-scaffold_109-1491911889:157448..157557Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1510915933:157448..157557TCONS_00046368-exon-scaffold_109-1510915933:157448..157557Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1575043694:157448..157557TCONS_00046368-exon-scaffold_109-1575043694:157448..157557Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1491911889:157903..157987TCONS_00046368-exon-scaffold_109-1491911889:157903..157987Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1510915933:157903..157987TCONS_00046368-exon-scaffold_109-1510915933:157903..157987Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1575043694:157903..157987TCONS_00046368-exon-scaffold_109-1575043694:157903..157987Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1491911889:158267..158389TCONS_00046368-exon-scaffold_109-1491911889:158267..158389Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1510915933:158267..158389TCONS_00046368-exon-scaffold_109-1510915933:158267..158389Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1575043694:158267..158389TCONS_00046368-exon-scaffold_109-1575043694:158267..158389Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1491911889:158527..158570TCONS_00046368-exon-scaffold_109-1491911889:158527..158570Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1510915933:158527..158570TCONS_00046368-exon-scaffold_109-1510915933:158527..158570Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1575043694:158527..158570TCONS_00046368-exon-scaffold_109-1575043694:158527..158570Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1491911889:159222..159265TCONS_00046368-exon-scaffold_109-1491911889:159222..159265Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1510915933:159222..159265TCONS_00046368-exon-scaffold_109-1510915933:159222..159265Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1575043694:159222..159265TCONS_00046368-exon-scaffold_109-1575043694:159222..159265Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1491911889:159585..159792TCONS_00046368-exon-scaffold_109-1491911889:159585..159792Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1510915933:159585..159792TCONS_00046368-exon-scaffold_109-1510915933:159585..159792Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1575043694:159585..159792TCONS_00046368-exon-scaffold_109-1575043694:159585..159792Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1491911889:159992..160138TCONS_00046368-exon-scaffold_109-1491911889:159992..160138Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1510915933:159992..160138TCONS_00046368-exon-scaffold_109-1510915933:159992..160138Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1575043694:159992..160138TCONS_00046368-exon-scaffold_109-1575043694:159992..160138Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1491911889:160410..160483TCONS_00046368-exon-scaffold_109-1491911889:160410..160483Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1510915933:160410..160483TCONS_00046368-exon-scaffold_109-1510915933:160410..160483Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1575043694:160410..160483TCONS_00046368-exon-scaffold_109-1575043694:160410..160483Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1491911889:160716..160887TCONS_00046368-exon-scaffold_109-1491911889:160716..160887Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1510915933:160716..160887TCONS_00046368-exon-scaffold_109-1510915933:160716..160887Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1575043694:160716..160887TCONS_00046368-exon-scaffold_109-1575043694:160716..160887Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1491911889:161268..161456TCONS_00046368-exon-scaffold_109-1491911889:161268..161456Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1510915933:161268..161456TCONS_00046368-exon-scaffold_109-1510915933:161268..161456Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1575043694:161268..161456TCONS_00046368-exon-scaffold_109-1575043694:161268..161456Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1491911889:161809..162021TCONS_00046368-exon-scaffold_109-1491911889:161809..162021Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1510915933:161809..162021TCONS_00046368-exon-scaffold_109-1510915933:161809..162021Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1575043694:161809..162021TCONS_00046368-exon-scaffold_109-1575043694:161809..162021Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1491911889:162304..162360TCONS_00046368-exon-scaffold_109-1491911889:162304..162360Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1510915933:162304..162360TCONS_00046368-exon-scaffold_109-1510915933:162304..162360Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1575043694:162304..162360TCONS_00046368-exon-scaffold_109-1575043694:162304..162360Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1491911889:162622..163508TCONS_00046368-exon-scaffold_109-1491911889:162622..163508Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1510915933:162622..163508TCONS_00046368-exon-scaffold_109-1510915933:162622..163508Clytia hemisphaericaexon
TCONS_00046368-exon-scaffold_109-1575043694:162622..163508TCONS_00046368-exon-scaffold_109-1575043694:162622..163508Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_109supercontigscaffold_109:153846..163508 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.764644	2.9943	0.509775	0.0241024	36.4325	28.6854	15.1577	17.0819	9.88707	13.0916	13.2742	10.6053	13.7087	15.8875	8.13002	8.09372	16.8848	16.9055	16.8855	9.63415	14.2125	15.3196	10.8051	12.2615	16.4378	19.1163	4.27977	4.37335	1.43198	2.26409
Blast
[Close]
BLAST of TCONS_00046368 vs. Swiss-Prot (Human)
Match: LIPB1 (Liprin-beta-1 OS=Homo sapiens GN=PPFIBP1 PE=1 SV=2)

HSP 1 Score: 310.071 bits (793), Expect = 3.111e-90
Identity = 183/436 (41.97%), Postives = 249/436 (57.11%), Query Frame = 2 
Query:  428 PQTPESVRSASVQKSKSKEILQMKSGLKSA----------SEPNLIRDGNRSIGLVSPPSLSVNGDEAIYRPFRQLISDQPFTTWSLDQVQDWMRDEGLEEYANNCSKCIKNGEDLIKFTSADFEKSLGISDPMIRKKLNLALKAITSNSPDYAGRLDHNWVARWLDDLGLPQYKQNFYIHKVDGRVLVNMTLDDILQLKVFNLLHHASLKRAVQFLRHQKFHPQFL-REVANQSEERCDHVMLWTNQRIMHWLRSVDLAEYAPNLRGSGVHGGLMVLEPRFNAETLANLLSIPNNKSLLRRHVATQFMTLLGDACQRQKEMTAKTADFVPLNGSEKHKLRKKGGLNFGTLRRRKSETDLETLICPMELDVSNIYSPPPALDPDNMFDLSENTSLSPXXXXXXXXXXXXXXXXXGPRIAELSQEIDQMTSMLGSDD 1702
            P +P+S       K KS+ I+++   L+ +          SEP   R G R+    + P L  + D  + +    L  D PF  W+ +QV +W+ ++GL  Y N+    I +G+ L++ +  D EK LGI   + RKKL LAL+A+ S      G+LD NWV RWLDD+GLPQYK  F   +VDGR+L  MT+DD+L LKV ++LHH S+KRA+Q LR   F P  L R  ++++      V  WTN R+M WLRSVDLAEYAPNLRGSGVHGGLMVLEPRFN ET+A LL+IP NK+LLRRH+AT F  L+G   Q QK    +  D+V L  + K K +K    NFG LR++K E D E  +CPMEL  ++  +      P     L E   L      +++  +         +I   S+ I+ +T ML  DD
Sbjct:  577 PPSPDS-------KKKSRGIMKLFGKLRRSQSTTFNPDDMSEPEFKRGGTRA---TAGPRLGWSRD--LGQSNSDL--DMPFAKWTKEQVCNWLMEQGLGSYLNSGKHWIASGQTLLQASQQDLEKELGIKHSLHRKKLQLALQALGSEEETNHGKLDFNWVTRWLDDIGLPQYKTQFDEGRVDGRMLHYMTVDDLLSLKVVSVLHHLSIKRAIQVLRINNFEPNCLRRRPSDENTIAPSEVQKWTNHRVMEWLRSVDLAEYAPNLRGSGVHGGLMVLEPRFNVETMAQLLNIPPNKTLLRRHLATHFNLLIGAEAQHQKRDAMELPDYVLLTATAKVKPKKLAFSNFGNLRKKKQE-DGEEYVCPMELGQASGSASKKGFKPGLDMRLYEEDDLDRLEQMEDSEGTVR-------QIGAFSEGINNLTHMLKEDD 990
The following BLAST results are available for this feature:
BLAST of TCONS_00046368 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LIPB13.111e-9041.97Liprin-beta-1 OS=Homo sapiens GN=PPFIBP1 PE=1 SV=2[more]
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