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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046402 ID=TCONS_00046402|Name=TCONS_00046402|organism=Clytia hemisphaerica|type=transcript|length=1508bp
TCCTCTTCCTCACCTGCATAAGTGTTCGTTTCACCATCTCCATTTCTCCT
TCCAAAGCTGAATCCAACAAAAGAGCAAACGGATCCAAAATAACATTCCG
TTTCTGTTTTCTCGGTTTATCCGGTTTCATTAAAATGGGAGGAGGCATTT
TATCGGGCGACACGCTTATGACAACAGGGACGGGAGCCGCCGTATAAGAT
TCAGTTTCGGAATCGTAAGAGCTTTGCGATCCTGCGGATGAACCGCTATT
GCTCCATAAGTCCGTTTGCATATCGTTAATTTCATCAATATCTGCAAAAG
ATAACTCAAACTCATCTGGTTCATTAACGTTTACAATTTGAGGCGGAGCC
ACCGACCACGAATTAGCGTCATTCGTTTTTGAAGTATTATTTTCGTGATC
ATTTACATGACGTTCGTCGGGAATGGTATCATCCCTTATTGTTTGTACTT
CCGTTTTTTCGATCTCTTCCGGTTTGGTTGTGTTTATTTTCGGTTTGGCT
GCTATACTTGGTTTGGGTGATACCGCAGGTGGTTTGGGTTTAGTAGTCGG
TGGAGGTGGTTTAGATTTAAGTTGAGCGGTAGAAGAAAGTTCTTCTTTAG
AACAACTACTGCTGGCATCTCCGTACGGTTGAAACCTTATGTCATCTTTG
GACGACGAAAGAGAAGAGTCATTATAAGATTGTAGTGAAAGGTTCGTATT
TTTCTTAAGTTCTTGTTGAAGCTcgtaaattttttgattttgtgcgCGTA
ACTTTGCGAGGTCTTCCTCTGATGGTTCGTTGTGATCGATTAAGACCCCT
ACGGGTGTGGTGCGGGTTGGCGGCGCCGGTGGAGCCTCTTTAAAGGGGAA
AGCTGGTTTATTCGAGGGTGCTGATTCATCAGGAGTAGCGGAAGCAGAGG
AGAGTGAAGAAAGAGATGAGATAGAGGATGCAGGCGAATGGAGAGGAGAG
GATTTCTGTTGTGGTTGGTTGTCAAAGTTCAAACTCTTCTTCGGGTCAGT
TCGCCAAACCTGGTCCCCGGACACTGGAGCATCTTCAAAGTTGGATTTCG
ATTTACTGCTAGATGAATGTCCGCCATTGACCATTCCATTACGTAAATGT
TGCGTAGAtggcgatgacgtcatcgcttCTGAACGCTCCGTTTGTTGTTG
GTCTTTCGAAGGACTGGGAACAATATTAGCGTTGACGTCACGTTGTCCTG
GCGGCGGTTTACTGTTATTGTTGTTGAGTTTGCGCCGACTTAGAGTGTCT
TGTAAATAAGTTCCGTTAAAAAGTCCCGGCGATTGTTTCCCGTAGGACAT
GGAGCGACGTGGGTCAAACCCACTTCCGTGTTGGCGGCGTAAAGCGTTAC
CGAGTTCGGCCATTCTGATGTTGAGCATTTTGAGTTCTTGTTTCTTTTCC
TGGATGATGTCACGTTGTAGTTGAAGCTGATGGCTTTGCTGAGAATTCAT
CTCGTTTCGAATCTGGAATGGATAAGGGTGTAAAGAATCTAGATTTTAGA
ACTAGGAT Run BLAST on NCBI transcript from alignment at scaffold_109:286945..288579- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046402 ID=TCONS_00046402|Name=TCONS_00046402|organism=Clytia hemisphaerica|type=transcript|length=1635bp|location=Sequence derived from alignment at scaffold_109:286945..288579- (Clytia hemisphaerica)
TCCTCTTCCTCACCTGCATAAGTGTTCGTTTCACCATCTCCATTTCTCCT
TCCAAAGCTGAATCCAACAAAAGAGCAAACGGATCCAAAATAACATTCCG
TTTCTGTTTTCTCGGTTTATCCGGTTTCATTAAAATGGGAGGAGGCATTT
TATCGGGCGACACGCTTATGACAACAGGGACGGGAGCCGCCGTATAAGAT
TCAGTTTCGGAATCGTAAGAGCTTTGCGATCCTGCGGATGAACCGCTATT
GCTCCATAAGTCCGTTTGCATATCGTTAATTTCATCAATATCTGCAAAAG
ATAACTCAAACTCATCTGGTTCATTAACGTTTACAATTTGAGGCGGAGCC
ACCGACCACGAATTAGCGTCATTCGTTTTTGAAGTATTATTTTCGTGATC
ATTTACATGACGTTCGTCGGGAATGGTATCATCCCTTATTGTTTGTACTT
CCGTTTTTTCGATCTCTTCCGGTTTGGTTGTGTTTATTTTCGGTTTGGCT
GCTATACTTGGTTTGGGTGATACCGCAGGTGGTTTGGGTTTAGTAGTCGG
TGGAGGTGGTTTAGATTTAAGTTGAGCGGTAGAAGAAAGTTCTTCTTTAG
AACAACTACTGCTGGCATCTCCGTACGGTTGAAACCTTATGTCATCTTTG
GACGACGAAAGAGAAGAGTCATTATAAGATTGTAGTGAAAGGTTCGTATT
TTTCTTAAGTTCTTGTTGAAGCTCGTAAATTTTTTGATTTTGTGCGCGTA
ACTTTGCGAGGTCTTCCTGTGATGGTTCGTTGTGATCGATTAAGACCCCT
ACGGGTGTGGTGCGAGTTGGCGGCGCCGGTGGAGCCTCTTTAAAGGGGAA
AGCTGGTTTATTTGAGAGTGCTGATTCATCAGNAGAGGTCTTCCTCTGAT
GGTTCGTTGTGATCGATTAAGACCCCTACGGGTGTGGTGCGGGTTGGCGG
CGCCGGTGGAGCCTCTTTAAAGGGGAAAGCTGGTTTATTCGAGGGTGCTG
ATTCATCAGGAGTAGCGGAAGCAGAGGAGAGTGAAGAAAGAGATGAGATA
GAGGATGCAGGCGAATGGAGAGGAGAGGATTTCTGTTGTGGTTGGTTGTC
AAAGTTCAAACTCTTCTTCGGGTCAGTTCGCCAAACCTGGTCCCCGGACA
CTGGAGCATCTTCAAAGTTGGATTTCGATTTACTGCTAGATGAATGTCCG
CCATTGACCATTCCATTACGTAAATGTTGCGTAGATGGCGATGACGTCAT
CGCTTCTGAACGCTCCGTTTGTTGTTGGTCTTTCGAAGGACTGGGAACAA
TATTAGCGTTGACGTCACGTTGTCCTGGCGGCGGTTTACTGTTATTGTTG
TTGAGTTTGCGCCGACTTAGAGTGTCTTGTAAATAAGTTCCGTTAAAAAG
TCCCGGCGATTGTTTCCCGTAGGACATGGAGCGACGTGGGTCAAACCCAC
TTCCGTGTTGGCGGCGTAAAGCGTTACCGAGTTCGGCCATTCTGATGTTG
AGCATTTTGAGTTCTTGTTTCTTTTCCTGGATGATGTCACGTTGTAGTTG
AAGCTGATGGCTTTGCTGAGAATTCATCTCGTTTCGAATCTGGAATGGAT
AAGGGTGTAAAGAATCTAGATTTTAGAACTAGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046402-exon-scaffold_109-1575043694:287820..288579 | TCONS_00046402-exon-scaffold_109-1575043694:287820..288579 | Clytia hemisphaerica | exon |
| TCONS_00046402-exon-scaffold_109-1575043694:286945..287692 | TCONS_00046402-exon-scaffold_109-1575043694:286945..287692 | Clytia hemisphaerica | exon |
| TCONS_00046402-exon-scaffold_109-1510915933:287820..288579 | TCONS_00046402-exon-scaffold_109-1510915933:287820..288579 | Clytia hemisphaerica | exon |
| TCONS_00046402-exon-scaffold_109-1510915933:286945..287692 | TCONS_00046402-exon-scaffold_109-1510915933:286945..287692 | Clytia hemisphaerica | exon |
| TCONS_00046402-exon-scaffold_109-1491911889:287820..288579 | TCONS_00046402-exon-scaffold_109-1491911889:287820..288579 | Clytia hemisphaerica | exon |
| TCONS_00046402-exon-scaffold_109-1491911889:286945..287692 | TCONS_00046402-exon-scaffold_109-1491911889:286945..287692 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_109 | supercontig | scaffold_109:286945..288579 - |
Blast
The following BLAST results are available for this feature:
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