TCONS_00046404 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046404
Unique NameTCONS_00046404
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length914

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046404 ID=TCONS_00046404|Name=TCONS_00046404|organism=Clytia hemisphaerica|type=transcript|length=914bp
tttgattatagATCCACATGCAAAATGGTTGGGTACACTGAGTTAGGCAG
CATCAACGACGAGTTTGCTGAATATCAGAAAAGTATTGAAGACGTAAATG
atgatttttcaaagaaagattttgCTACCTATGTCAATGTTTACATGGTC
AGGGGAATCTTTACTAACCTTCAAAAGGCCTTTGGCTATTATGCAACTAG
AGGGATTACTGGTCACCAGCTATACCTATGTACGATGGAAGCTGTTCGTG
TATTGACTGCTATTGGATTTAAAGTCAGGTCAATGACATCCGACGGTGCA
AGCTCAAACCGCaagttttttgatattattCATGATGGAGATACTGCTCA
CAAAAGCAGAAACCCATTCGACATTTCAACATCTCTGTATTCATTCTCTG
ATGTCCCACATCTGTTGAAAACAACTTGTAATGGATTTGAAAATTCACAt
tggaataaaaaaacaagaacTTTGCATCTCGACAAACAAGATGTCAGTTG
GAAGCATGTTGTTAAGCTCTACGAGGAAGATCTTGGAATCAAACATGATG
GTACAGTTGAGAGGTGCGCCCTTGGAATTCGAAAGATTCATCGCCTACGC
GAGGATCATGTCAAGAAAACACCTAGAAGCAGAATGACAGTCAAATTAGC
AGCGCAAGTCTTGAGTACAACAACTGCTAATGCCTTGAAGGATCGGAACA
GAATTGATACCAAGTCAACtattaaattcattgaaatgTTTGACCAAGTG
TTTGATTGCTTGAATGTTTCCAAAATCAACAAAGGGAAGTTTGGAAAGCC
AAACTTGAAGGTGTACAGGTCATCTAATGATAAACGCTTTACGATATTGC
AGAAGGATTTCCTGAAAGACTTCttaggaggatggaaaaaagaaGTTGAT
GCCATGATTGTCAT
Run BLAST on NCBI

protein sequence of TCONS_00046404-protein

>TCONS_00046404-protein ID=TCONS_00046404-protein|Name=TCONS_00046404-protein|organism=Clytia hemisphaerica|type=polypeptide|length=304bp
FDYRSTCKMVGYTELGSINDEFAEYQKSIEDVNDDFSKKDFATYVNVYMV
RGIFTNLQKAFGYYATRGITGHQLYLCTMEAVRVLTAIGFKVRSMTSDGA
SSNRKFFDIIHDGDTAHKSRNPFDISTSLYSFSDVPHLLKTTCNGFENSH
WNKKTRTLHLDKQDVSWKHVVKLYEEDLGIKHDGTVERCALGIRKIHRLR
EDHVKKTPRSRMTVKLAAQVLSTTTANALKDRNRIDTKSTIKFIEMFDQV
FDCLNVSKINKGKFGKPNLKVYRSSNDKRFTILQKDFLKDFLGGWKKEVD
AMIV
Run BLAST on NCBI

transcript from alignment at scaffold_109:366539..368064-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046404 ID=TCONS_00046404|Name=TCONS_00046404|organism=Clytia hemisphaerica|type=transcript|length=1526bp|location=Sequence derived from alignment at scaffold_109:366539..368064- (Clytia hemisphaerica)
TTTGATTATAGATCCACATGCAAAATGGTTGGGTACACTGAGTTAGGCAG
CATCAACGACGAGTTTGCTGAATATCAGAAAAGTATTGAAGACGTAAATG
ATGATTTTTCAAAGAAAGATTTTGCTACCTATGTCAATGTTTACATGGTC
AGGGGAATCTTTACTAACCTTCAAAAGGCCTTTGGCTATTATGCAACTAG
AGGGATTACTGGTCACCAGCTATACCTATGTACGATGGAAGCTGTTCGTG
TATTGACTGCTATTGGATTTAAAGTCAGGTCAATGACATCCGACGGTGCA
AGCTCAAACCGCAAGTTTTTTGATATTATTCATGATGGAGATACTGCTCA
CAAAAGCAGAAACCCATTCGACATTTCAACATCTCTGTATTCATTCTCTG
ATGTCCCACATCTGTTGAAAACAACTTGTAATGGATTTGAAAATTCACAT
TGGAATAAAAAAACAAGAACTTTGCATGTAAGTAATTCTGGAAAATCCAA
GTAGTCTCTAAAGCTCTAACTTTAATAATAAAATCTCCATTCTGAGGTGT
GTCGAAAAAGGTTCATCATTGAGTTTTGAGCATATGTCAAAGTTAGATAT
TTTATCGATTTTTATGTAATCGAAACATTTTCTAATCAAAGCTCGACAAA
CAAGATGTCAGTTGGAAGCATGTTGTTAAGCTCTACGAGGAAGATCTTGG
AATCAAACATGATGGTACAGTTGAGAGGTGCGCCCTTGGAATTCGAAAGA
TTCATCGCCTACGCGAGGATCATGTCAAGAAAACACCTAGAAGCAGAATG
ACAGTCAAATTAGCAGCGCAAGTATGATTTCTTTTTAAATAAAACTTGTT
GAAGCTAGAAACTGAATTTAAAGTAAAAAATTTATCTCAATATTTGCGAT
ATTTTTGGACACAAATTCATGTGCAGCAGGCTATTGGCAATTTAATTGAT
GACACTCTTTTCAAAAAAAATTGAATACTTCAACATCTATTTCAACTCTT
GTCTTTTGACCTTCTAAGAAAATCCCAATTTTTCACTATATTTAAGTTTT
TCATGGTATTCTGAACAGTAGATTGCATATAAAGAAACTTTTACTTCATT
TTTTAGGTCTTGAGTACAACAACTGCTAATGCCTTGAAGGATCGGAACAG
AATTGATACCAAGTCAACTATTAAATTCATTGAAATGTTTGACCAAGTGT
TTGATTGCTTGAATGTTTCCAAAATCAACAAAGGGAAGTTTGGAAAGCCA
AACTTGAAGGTGTACAGGTCATCTAATGATAAACGCTTTACGGTAATTAT
CAATATGTTGTTTTGCTTTATTTGTACCCATTGGTTATCTATCTGATTTT
AGTCATTTCAGTCATTTCTAAAGGATTTGTGTCTTTACGCAAAATTATAA
TACAATTGTTCATTGTTATTGAGACCATCACTGTAATATTTACCTTTTCC
CTCAGATATTGCAGAAGGATTTCCTGAAAGACTTCTTAGGAGGATGGAAA
AAAGAAGTTGATGCCATGATTGTCAT

Coding sequence (CDS) from alignment at scaffold_109:366539..368064-

>TCONS_00046404 ID=TCONS_00046404|Name=TCONS_00046404|organism=Clytia hemisphaerica|type=CDS|length=3648bp|location=Sequence derived from alignment at scaffold_109:366539..368064- (Clytia hemisphaerica)
ATATTGCAGAAGGATTTCCTGAAAGACTTCTTAGGAGGATGGAAAAAAGA
AGTTGATGCCATGATTGTCGTCTTGAGTACAACAACTGCTAATGCCTTGA
AGGATCGGAACAGAATTGATACCAAGTCAACTATTAAATTCATTGAAATG
TTTGACCAAGTGTTTGATTGCTTGAATGTTTCCAAAATCAACAAAGGGAA
GTTTGGAAAGCCAAACTTGAAGGTGTACAGGTCATCTAATGATAAACGCT
TTACGCTCGACAAACAAGATGTCAGTTGGAAGCATGTTGTTAAGCTCTAC
GAGGAAGATCTTGGAATCAAACATGATGGTACAGTTGAGAGGTGCGCCCT
TGGAATTCGAAAGATTCATCGCCTACGCGAGGATCATGTCAAGAAAACAC
CTAGAAGCAGAATGACAGTCAAATTAGCAGCGCAATTTGATTATAGATCC
ACATGCAAAATGGTTGGGTACACTGAGTTAGGCAGCATCAACGACGAGTT
TGCTGAATATCAGAAAAGTATTGAAGACGTAAATGATGATTTTTCAAAGA
AAGATTTTGCTACCTATGTCAATGTTTACATGGTCAGGGGAATCTTTACT
AACCTTCAAAAGGCCTTTGGCTATTATGCAACTAGAGGGATTACTGGTCA
CCAGCTATACCTATGTACGATGGAAGCTGTTCGTGTATTGACTGCTATTG
GATTTAAAGTCAGGTCAATGACATCCGACGGTGCAAGCTCAAACCGCAAG
TTTTTTGATATTATTCATGATGGAGATACTGCTCACAAAAGCAGAAACCC
ATTCGACATTTCAACATCTCTGTATTCATTCTCTGATGTCCCACATCTGT
TGAAAACAACTTGTAATGGATTTGAAAATTCACATTGGAATAAAAAAACA
AGAACTTTGCATATATTGCAGAAGGATTTCCTGAAAGACTTCTTAGGAGG
ATGGAAAAAAGAAGTTGATGCCATGATTGTCGTCTTGAGTACAACAACTG
CTAATGCCTTGAAGGATCGGAACAGAATTGATACCAAGTCAACTATTAAA
TTCATTGAAATGTTTGACCAAGTGTTTGATTGCTTGAATGTTTCCAAAAT
CAACAAAGGGAAGTTTGGAAAGCCAAACTTGAAGGTGTACAGGTCATCTA
ATGATAAACGCTTTACGCTCGACAAACAAGATGTCAGTTGGAAGCATGTT
GTTAAGCTCTACGAGGAAGATCTTGGAATCAAACATGATGGTACAGTTGA
GAGGTGCGCCCTTGGAATTCGAAAGATTCATCGCCTACGCGAGGATCATG
TCAAGAAAACACCTAGAAGCAGAATGACAGTCAAATTAGCAGCGCAATTT
GATTATAGATCCACATGCAAAATGGTTGGGTACACTGAGTTAGGCAGCAT
CAACGACGAGTTTGCTGAATATCAGAAAAGTATTGAAGACGTAAATGATG
ATTTTTCAAAGAAAGATTTTGCTACCTATGTCAATGTTTACATGGTCAGG
GGAATCTTTACTAACCTTCAAAAGGCCTTTGGCTATTATGCAACTAGAGG
GATTACTGGTCACCAGCTATACCTATGTACGATGGAAGCTGTTCGTGTAT
TGACTGCTATTGGATTTAAAGTCAGGTCAATGACATCCGACGGTGCAAGC
TCAAACCGCAAGTTTTTTGATATTATTCATGATGGAGATACTGCTCACAA
AAGCAGAAACCCATTCGACATTTCAACATCTCTGTATTCATTCTCTGATG
TCCCACATCTGTTGAAAACAACTTGTAATGGATTTGAAAATTCACATTGG
AATAAAAAAACAAGAACTTTGCATATATTGCAGAAGGATTTCCTGAAAGA
CTTCTTAGGAGGATGGAAAAAAGAAGTTGATGCCATGATTGTCGTCTTGA
GTACAACAACTGCTAATGCCTTGAAGGATCGGAACAGAATTGATACCAAG
TCAACTATTAAATTCATTGAAATGTTTGACCAAGTGTTTGATTGCTTGAA
TGTTTCCAAAATCAACAAAGGGAAGTTTGGAAAGCCAAACTTGAAGGTGT
ACAGGTCATCTAATGATAAACGCTTTACGCTCGACAAACAAGATGTCAGT
TGGAAGCATGTTGTTAAGCTCTACGAGGAAGATCTTGGAATCAAACATGA
TGGTACAGTTGAGAGGTGCGCCCTTGGAATTCGAAAGATTCATCGCCTAC
GCGAGGATCATGTCAAGAAAACACCTAGAAGCAGAATGACAGTCAAATTA
GCAGCGCAATTTGATTATAGATCCACATGCAAAATGGTTGGGTACACTGA
GTTAGGCAGCATCAACGACGAGTTTGCTGAATATCAGAAAAGTATTGAAG
ACGTAAATGATGATTTTTCAAAGAAAGATTTTGCTACCTATGTCAATGTT
TACATGGTCAGGGGAATCTTTACTAACCTTCAAAAGGCCTTTGGCTATTA
TGCAACTAGAGGGATTACTGGTCACCAGCTATACCTATGTACGATGGAAG
CTGTTCGTGTATTGACTGCTATTGGATTTAAAGTCAGGTCAATGACATCC
GACGGTGCAAGCTCAAACCGCAAGTTTTTTGATATTATTCATGATGGAGA
TACTGCTCACAAAAGCAGAAACCCATTCGACATTTCAACATCTCTGTATT
CATTCTCTGATGTCCCACATCTGTTGAAAACAACTTGTAATGGATTTGAA
AATTCACATTGGAATAAAAAAACAAGAACTTTGCATATATTGCAGAAGGA
TTTCCTGAAAGACTTCTTAGGAGGATGGAAAAAAGAAGTTGATGCCATGA
TTGTCGTCTTGAGTACAACAACTGCTAATGCCTTGAAGGATCGGAACAGA
ATTGATACCAAGTCAACTATTAAATTCATTGAAATGTTTGACCAAGTGTT
TGATTGCTTGAATGTTTCCAAAATCAACAAAGGGAAGTTTGGAAAGCCAA
ACTTGAAGGTGTACAGGTCATCTAATGATAAACGCTTTACGCTCGACAAA
CAAGATGTCAGTTGGAAGCATGTTGTTAAGCTCTACGAGGAAGATCTTGG
AATCAAACATGATGGTACAGTTGAGAGGTGCGCCCTTGGAATTCGAAAGA
TTCATCGCCTACGCGAGGATCATGTCAAGAAAACACCTAGAAGCAGAATG
ACAGTCAAATTAGCAGCGCAATTTGATTATAGATCCACATGCAAAATGGT
TGGGTACACTGAGTTAGGCAGCATCAACGACGAGTTTGCTGAATATCAGA
AAAGTATTGAAGACGTAAATGATGATTTTTCAAAGAAAGATTTTGCTACC
TATGTCAATGTTTACATGGTCAGGGGAATCTTTACTAACCTTCAAAAGGC
CTTTGGCTATTATGCAACTAGAGGGATTACTGGTCACCAGCTATACCTAT
GTACGATGGAAGCTGTTCGTGTATTGACTGCTATTGGATTTAAAGTCAGG
TCAATGACATCCGACGGTGCAAGCTCAAACCGCAAGTTTTTTGATATTAT
TCATGATGGAGATACTGCTCACAAAAGCAGAAACCCATTCGACATTTCAA
CATCTCTGTATTCATTCTCTGATGTCCCACATCTGTTGAAAACAACTTGT
AATGGATTTGAAAATTCACATTGGAATAAAAAAACAAGAACTTTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029610XLOC_029610Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046404-exon-scaffold_109-1575043694:367588..368064TCONS_00046404-exon-scaffold_109-1575043694:367588..368064Clytia hemisphaericaexon
TCONS_00046404-exon-scaffold_109-1575043694:367244..367423TCONS_00046404-exon-scaffold_109-1575043694:367244..367423Clytia hemisphaericaexon
TCONS_00046404-exon-scaffold_109-1575043694:366773..366958TCONS_00046404-exon-scaffold_109-1575043694:366773..366958Clytia hemisphaericaexon
TCONS_00046404-exon-scaffold_109-1575043694:366539..366609TCONS_00046404-exon-scaffold_109-1575043694:366539..366609Clytia hemisphaericaexon
TCONS_00046404-exon-scaffold_109-1510915933:367588..368064TCONS_00046404-exon-scaffold_109-1510915933:367588..368064Clytia hemisphaericaexon
TCONS_00046404-exon-scaffold_109-1510915933:367244..367423TCONS_00046404-exon-scaffold_109-1510915933:367244..367423Clytia hemisphaericaexon
TCONS_00046404-exon-scaffold_109-1510915933:366773..366958TCONS_00046404-exon-scaffold_109-1510915933:366773..366958Clytia hemisphaericaexon
TCONS_00046404-exon-scaffold_109-1510915933:366539..366609TCONS_00046404-exon-scaffold_109-1510915933:366539..366609Clytia hemisphaericaexon
TCONS_00046404-exon-scaffold_109-1491911889:367588..368064TCONS_00046404-exon-scaffold_109-1491911889:367588..368064Clytia hemisphaericaexon
TCONS_00046404-exon-scaffold_109-1491911889:367244..367423TCONS_00046404-exon-scaffold_109-1491911889:367244..367423Clytia hemisphaericaexon
TCONS_00046404-exon-scaffold_109-1491911889:366773..366958TCONS_00046404-exon-scaffold_109-1491911889:366773..366958Clytia hemisphaericaexon
TCONS_00046404-exon-scaffold_109-1491911889:366539..366609TCONS_00046404-exon-scaffold_109-1491911889:366539..366609Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046404-proteinTCONS_00046404-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_109supercontigscaffold_109:366539..368064 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.201292	0.0981458	0.170935	0	0.339317	0.107253	0.258793	0.363418	0.169625	0.210108	0.050984	0.134059	0.301214	0.4866	0.285751	0.643974	0.377773	0.503367	0.267473	0.111956	0.778483	0.640772	0.403896	0.314743	0.0540296	0	0.207009	0.294567	0.223419	0.113814
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046404 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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