TCONS_00046406 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046406
Unique NameTCONS_00046406
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length818

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046406 ID=TCONS_00046406|Name=TCONS_00046406|organism=Clytia hemisphaerica|type=transcript|length=818bp
ATACCAAAAGTGTGATTTTAAAAGAGGTAATATGTTGGCATAAAAAAGCT
TCACGTAAAAGAAAGTTTGAACTACTTAGAGATAGTGAAAAACATGAGCA
TGACAAAGAAAAGAAGCGCAAAGCTGCAAAAATTTCACGCGAATTGAATA
AAgggtcagaaaaacatgaacaacaaaaagaaaaaatgcgAAAAGCTGCA
AAATCTTCACGTGAATCAAacaaaggatcagaaaaacatgaacaacaaaa
agaaaagatgcGTAAAGCTGCAAAATCTTCACGCGAATCgaataaaggat
cagaaaaacatgaacaacaaaaagaaaagatgcGCAAAGCTGCAAAATCT
TCAcgcaaatcaaacaaaggatcagaaaaacatgaacaacaaaaagaaaa
gatgcGCAAAGCTGCAAAATCTTCAcgcaaatcaaacaaaggatcagaaa
aacatgaacaacaaaaagaaaagatgcGCAAAGCTGCAAAATCTTCAcgc
aaatcaaacaaaggatcagaaaaacatgaacgaGAAAAGGAAGCAAAGCG
CAAAGCTTATATTAACAACAAAAAACTTATTTCAGGAAAAAGGGTTGATa
atttcaggcaaaaaaaacaaGAGGGTCCCTCTTACATATGTGTTATGTGT
AATCGCAGTATGTTCAAGAAATCTGTAATTCTTTTTGATGAACAAAAGTA
CTCAAATAtcaattttgaagaaatagaaaattttaatcctgTTATGACTT
TTGACAGTAATTTTTATGTATGTACAACTTGTCATAGGAAACTAGTGAAA
GGTGAAATCCCATGTCAA
Run BLAST on NCBI

protein sequence of TCONS_00046406-protein

>TCONS_00046406-protein ID=TCONS_00046406-protein|Name=TCONS_00046406-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
TKSVILKEVICWHKKASRKRKFELLRDSEKHEHDKEKKRKAAKISRELNK
GSEKHEQQKEKMRKAAKSSRESNKGSEKHEQQKEKMRKAAKSSRESNKGS
EKHEQQKEKMRKAAKSSRKSNKGSEKHEQQKEKMRKAAKSSRKSNKGSEK
HEQQKEKMRKAAKSSRKSNKGSEKHEREKEAKRKAYINNKKLISGKRVDN
FRQKKQEGPSYICVMCNRSMFKKSVILFDEQKYSNINFEEIENFNPVMTF
DSNFYVCTTCHRKLVKGEIPCQ
Run BLAST on NCBI

transcript from alignment at scaffold_109:13692..14509

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046406 ID=TCONS_00046406|Name=TCONS_00046406|organism=Clytia hemisphaerica|type=transcript|length=818bp|location=Sequence derived from alignment at scaffold_109:13692..14509 (Clytia hemisphaerica)
TTGACATGGGATTTCACCTTTCACTAGTTTCCTATGACAAGTTGTACATA
CATAAAAATTACTGTCAAAAGTCATAAcaggattaaaattttctatttct
tcaaaattgaTATTTGAGTACTTTTGTTCATCAAAAAGAATTACAGATTT
CTTGAACATACTGCGATTACACATAACACATATGTAAGAGGGACCCTCtt
gttttttttgcctgaaattATCAACCCTTTTTCCTGAAATAAGTTTTTTG
TTGTTAATATAAGCTTTGCGCTTTGCTTCCTTTTCtcgttcatgtttttc
tgatcctttgtttgatttgcgTGAAGATTTTGCAGCTTTGCgcatctttt
ctttttgttgttcatgtttttctgatcctttgtttgatttgcgTGAAGAT
TTTGCAGCTTTGCgcatcttttctttttgttgttcatgtttttctgatcc
tttgtttgatttgcgTGAAGATTTTGCAGCTTTGCgcatcttttcttttt
gttgttcatgtttttctgatcctttattcGATTCGCGTGAAGATTTTGCA
GCTTTACgcatcttttctttttgttgttcatgtttttctgatcctttgtT
TGATTCACGTGAAGATTTTGCAGCTTTTcgcattttttctttttgttgtt
catgtttttctgacccTTTATTCAATTCGCGTGAAATTTTTGCAGCTTTG
CGCTTCTTTTCTTTGTCATGCTCATGTTTTTCACTATCTCTAAGTAGTTC
AAACTTTCTTTTACGTGAAGCTTTTTTATGCCAACATATTACCTCTTTTA
AAATCACACTTTTGGTAT

Coding sequence (CDS) from alignment at scaffold_109:13692..14509

>TCONS_00046406 ID=TCONS_00046406|Name=TCONS_00046406|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at scaffold_109:13692..14509 (Clytia hemisphaerica)
TTGACATGGGATTTCACCTTTCACTAGTTTCCTATGACAAGTTGTACATA
CATAAAAATTACTGTCAAAAGTCATAAcaggattaaaattttctatttct
tcaaaattgaTATTTGAGTACTTTTGTTCATCAAAAAGAATTACAGATTT
CTTGAACATACTGCGATTACACATAACACATATGTAAGAGGGACCCTCtt
gttttttttgcctgaaattATCAACCCTTTTTCCTGAAATAAGTTTTTTG
TTGTTAATATAAGCTTTGCGCTTTGCTTCCTTTTCtcgttcatgtttttc
tgatcctttgtttgatttgcgTGAAGATTTTGCAGCTTTGCgcatctttt
ctttttgttgttcatgtttttctgatcctttgtttgatttgcgTGAAGAT
TTTGCAGCTTTGCgcatcttttctttttgttgttcatgtttttctgatcc
tttgtttgatttgcgTGAAGATTTTGCAGCTTTGCgcatcttttcttttt
gttgttcatgtttttctgatcctttattcGATTCGCGTGAAGATTTTGCA
GCTTTACgcatcttttctttttgttgttcatgtttttctgatcctttgtT
TGATTCACGTGAAGATTTTGCAGCTTTTcgcattttttctttttgttgtt
catgtttttctgacccTTTATTCAATTCGCGTGAAATTTTTGCAGCTTTG
CGCTTCTTTTCTTTGTCATGCTCATGTTTTTCACTATCTCTAAGTAGTTC
AAACTTTCTTTTACGTGAAGCTTTTTTATGCCAACATATTACCTCTTTTA
AAATCACACTTTTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029612XLOC_029612Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046406-exon-scaffold_109-1491911889:13692..14509TCONS_00046406-exon-scaffold_109-1491911889:13692..14509Clytia hemisphaericaexon
TCONS_00046406-exon-scaffold_109-1510915933:13692..14509TCONS_00046406-exon-scaffold_109-1510915933:13692..14509Clytia hemisphaericaexon
TCONS_00046406-exon-scaffold_109-1575043694:13692..14509TCONS_00046406-exon-scaffold_109-1575043694:13692..14509Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046406-proteinTCONS_00046406-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_109supercontigscaffold_109:13692..14509 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.40779	0.624894	0.659601	1.03251	0.628489	0.49664	0.524279	0.631058	0.343637	0.486457	0	0.349182	0.19372	0.523069	0.0661591	0.177497	0	0.0896485	0	0.259209	0	0.16484	0.200385	0.182179	1.06329	1.00478	0.15976	0.255751	0.323297	0.329388
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046406 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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