TCONS_00046409 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046409
Unique NameTCONS_00046409
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length644

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046409 ID=TCONS_00046409|Name=TCONS_00046409|organism=Clytia hemisphaerica|type=transcript|length=644bp
CATCTGACACACAAAGGTTTGTTAATGGATCAAATGACCTTGAACTAGCT
GAGGTATACTCTGAAACTCGAAGAAGACCAAAAGAATCTGTAAGCACTAG
ACATTTCCAAAGTGCTTGGTCGTAGGCAGAAAGTTGACTGCTAGAGATAA
AAGATAACATTTGTCGATGGTGTGCAGGTGTGATAGGATTTCTAGTCCTT
CTTCTAGCCACTTGAGTGCGCCTTATCCCTCTACAGACATAGTAGAGTCT
TCGCATGGAAGCAATTCTTCGACGATTATTCAAAACTTCGACGCCTTGTT
GTAGTGCGCAAAACTGAATTCCATAGAGATATACCTTTATTGTATTGTAC
TGTAGGCCTTGTCTCGCAAGAGAAGTGACAAATAGTTCTAAATGTAATTC
TTGTGGCGGCAACCACACAAAGCAATACatgaagcaaaatctttgaaaac
gaTTGAAGCCTGATTGATATGTGCACNTCTGATTGATATGTGCGCAAAGA
GTTTCGAGAGATACCTTCAGCTAGTAAACGGTCTCGAGTAAGTCTAAGAT
CTCCCATGCTTCCTCCGGGATCCTGGAAGGTTCTGGACTGGCGGACTCGG
CTAGACTCAAGAACCGGCCAACCTGCAGGCGAGAAAGTAAGNAA
Run BLAST on NCBI

protein sequence of TCONS_00046409-protein

>TCONS_00046409-protein ID=TCONS_00046409-protein|Name=TCONS_00046409-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
MYCFVWLPPQELHLELFVTSLARQGLQYNTIKVYLYGIQFCALQQGVEVL
NNRRRIASMRRLYYVCRGIRRTQVARRRTRNPITPAHHRQMLSFISSSQL
SAYDQALWKCLVLTDSFGLLRVSEYTSASSRSFDPLTNLCVSD
Run BLAST on NCBI

transcript from alignment at scaffold_109:31274..31917

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046409 ID=TCONS_00046409|Name=TCONS_00046409|organism=Clytia hemisphaerica|type=transcript|length=644bp|location=Sequence derived from alignment at scaffold_109:31274..31917 (Clytia hemisphaerica)
TTNCTTACTTTCTCGCCTGCAGGTTGGCCGGTTCTTGAGTCTAGCCGAGT
CCGCCAGTCCAGAACCTTCCAGGATCCCGGAGGAAGCATGGGAGATCTTA
GACTTACTCGAGACCGTTTACTAGCTGAAGGTATCTCTCGAAACTCTTTG
CGCACATATCAATCAGANGTGCACATATCAATCAGGCTTCAAtcgttttc
aaagattttgcttcatGTATTGCTTTGTGTGGTTGCCGCCACAAGAATTA
CATTTAGAACTATTTGTCACTTCTCTTGCGAGACAAGGCCTACAGTACAA
TACAATAAAGGTATATCTCTATGGAATTCAGTTTTGCGCACTACAACAAG
GCGTCGAAGTTTTGAATAATCGTCGAAGAATTGCTTCCATGCGAAGACTC
TACTATGTCTGTAGAGGGATAAGGCGCACTCAAGTGGCTAGAAGAAGGAC
TAGAAATCCTATCACACCTGCACACCATCGACAAATGTTATCTTTTATCT
CTAGCAGTCAACTTTCTGCCTACGACCAAGCACTTTGGAAATGTCTAGTG
CTTACAGATTCTTTTGGTCTTCTTCGAGTTTCAGAGTATACCTCAGCTAG
TTCAAGGTCATTTGATCCATTAACAAACCTTTGTGTGTCAGATG

Coding sequence (CDS) from alignment at scaffold_109:31274..31917

>TCONS_00046409 ID=TCONS_00046409|Name=TCONS_00046409|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at scaffold_109:31274..31917 (Clytia hemisphaerica)
atGTATTGCTTTGTGTGGTTGCCGCCACAAGAATTACATTTAGAACTATT
TGTCACTTCTCTTGCGAGACAAGGCCTACAGTACAATACAATAAAGGTAT
ATCTCTATGGAATTCAGTTTTGCGCACTACAACAAGGCGTCGAAGTTTTG
AATAATCGTCGAAGAATTGCTTCCATGCGAAGACTCTACTATGTCTGTAG
AGGGATAAGGCGCACTCAAGTGGCTAGAAGAAGGACTAGAAATCCTATCA
CACCTGCACACCATCGACAAATGTTATCTTTTATCTCTAGCAGTCAACTT
TCTGCCTACGACCAAGCACTTTGGAAATGTCTAGTGCTTACAGATTCTTT
TGGTCTTCTTCGAGTTTCAGAGTATACCTCAGCTAGTTCAAGGTCATTTG
ATCCATTAACAAACCTTTGTGTGTCAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029615XLOC_029615Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046409-proteinTCONS_00046409-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046409-exon-scaffold_109-1491911889:31274..31917TCONS_00046409-exon-scaffold_109-1491911889:31274..31917Clytia hemisphaericaexon
TCONS_00046409-exon-scaffold_109-1510915933:31274..31917TCONS_00046409-exon-scaffold_109-1510915933:31274..31917Clytia hemisphaericaexon
TCONS_00046409-exon-scaffold_109-1575043694:31274..31917TCONS_00046409-exon-scaffold_109-1575043694:31274..31917Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_109supercontigscaffold_109:31274..31917 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.769683	1.3633	0.276406	0.362486	1.97258	1.76657	0.924858	1.59903	1.89788	2.70287	1.66064	2.6356	3.47391	3.22303	2.22651	1.87674	2.93745	3.41867	3.12626	1.53515	5.6222	6.28091	4.00462	4.53085	3.46825	3.98758	2.97716	0.991694	2.45834	1.01807
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010998Integrase_Lambda-type_N
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046409 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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