TCONS_00046416 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046416
Unique NameTCONS_00046416
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length322

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046416 ID=TCONS_00046416|Name=TCONS_00046416|organism=Clytia hemisphaerica|type=transcript|length=322bp
TTGCCGAAATCTGTGAAATGAAATAAATGTGAAATATTGTTCGCTTTGGG
GCTGATGTTGGGGATGTACCATGCAATATGAGGTCTAACTTAAGCGCCTA
GGACCGTAAGGATGACGGCCTGTCGAtggactgtaaggaggacagccata
tgagcgtggactgtaaggaggacagcctTTACTCCTGAACCTTATGAGCG
TGGACTGTAAGGACGACAGCCTTTACTAACTTAAGCGCCTAAGACCGTAA
GGATGACGGCCTGTCGAaggactgtaaggaggacagcctTTACTCCTAAC
CTTATGAGCgtggactgtaagg
Run BLAST on NCBI

transcript from alignment at scaffold_109:297484..297805

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046416 ID=TCONS_00046416|Name=TCONS_00046416|organism=Clytia hemisphaerica|type=transcript|length=322bp|location=Sequence derived from alignment at scaffold_109:297484..297805 (Clytia hemisphaerica)
ccttacagtccacGCTCATAAGGTTAGGAGTAAaggctgtcctccttaca
gtcctTCGACAGGCCGTCATCCTTACGGTCTTAGGCGCTTAAGTTAGTAA
AGGCTGTCGTCCTTACAGTCCACGCTCATAAGGTTCAGGAGTAAaggctg
tcctccttacagtccacgctcatatggctgtcctccttacagtccaTCGA
CAGGCCGTCATCCTTACGGTCCTAGGCGCTTAAGTTAGACCTCATATTGC
ATGGTACATCCCCAACATCAGCCCCAAAGCGAACAATATTTCACATTTAT
TTCATTTCACAGATTTCGGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029622XLOC_029622Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046416-exon-scaffold_109-1491911889:297484..297805TCONS_00046416-exon-scaffold_109-1491911889:297484..297805Clytia hemisphaericaexon
TCONS_00046416-exon-scaffold_109-1510915933:297484..297805TCONS_00046416-exon-scaffold_109-1510915933:297484..297805Clytia hemisphaericaexon
TCONS_00046416-exon-scaffold_109-1575043694:297484..297805TCONS_00046416-exon-scaffold_109-1575043694:297484..297805Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_109supercontigscaffold_109:297484..297805 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.05238	3.81746	3.44792	1.60403	21.565	15.0718	25.85	25.5786	5.03825	10.9187	6.92153	4.65963	4.08267	4.7799	1.15224	1.50532	2.73414	1.94099	1.00115	0.482873	0	0	1.24463	0.834379	9.67715	21.0641	0	0	1.35384	1.85895
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046416 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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