TCONS_00046418 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046418
Unique NameTCONS_00046418
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length463

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046418 ID=TCONS_00046418|Name=TCONS_00046418|organism=Clytia hemisphaerica|type=transcript|length=463bp
TTTAGGAAATGaagatttttggaaattttagttTGATTGGCAATTTTTCC
AGATTTTGGTTTAAAAGTCCAACTTGGTGCATACTGTTTCCATGGTAATG
AATGCAAATATGGCAGTATTGAAAATCACTTGCAAAATAGCTGTCAACAT
GTCGAGTTCCAGCGAGAATGAATCCGAGTGTGAAAGTGATTTTTTCTCCA
GTGGTGATGAAAATGAGTTGAGTGATAATGATGATGAATGTGATTATGAT
CCCGAAGGTGTCGAGAGCGATGAGGACAATGCTGGTTTTTGTAAATGGAG
AACTTCCTCTCAGACAGAATTAGAGATAATAAAACCATCGCCAAACCTTA
CTGAGTTTGGAAAGCCAAGTATGGAATTTGACACTGATGTGCAGCCAAAG
GACCTTGTTGAAAAGATTCTTGATGATGAGTTCATTAACAAATGTATTGA
CTGTACCAATGCA
Run BLAST on NCBI

protein sequence of TCONS_00046418-protein

>TCONS_00046418-protein ID=TCONS_00046418-protein|Name=TCONS_00046418-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
MVMNANMAVLKITCKIAVNMSSSSENESECESDFFSSGDENELSDNDDEC
DYDPEGVESDEDNAGFCKWRTSSQTELEIIKPSPNLTEFGKPSMEFDTDV
QPKDLVEKILDDEFINKCIDCTNA
Run BLAST on NCBI

transcript from alignment at scaffold_109:394514..394976

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046418 ID=TCONS_00046418|Name=TCONS_00046418|organism=Clytia hemisphaerica|type=transcript|length=463bp|location=Sequence derived from alignment at scaffold_109:394514..394976 (Clytia hemisphaerica)
TGCATTGGTACAGTCAATACATTTGTTAATGAACTCATCATCAAGAATCT
TTTCAACAAGGTCCTTTGGCTGCACATCAGTGTCAAATTCCATACTTGGC
TTTCCAAACTCAGTAAGGTTTGGCGATGGTTTTATTATCTCTAATTCTGT
CTGAGAGGAAGTTCTCCATTTACAAAAACCAGCATTGTCCTCATCGCTCT
CGACACCTTCGGGATCATAATCACATTCATCATCATTATCACTCAACTCA
TTTTCATCACCACTGGAGAAAAAATCACTTTCACACTCGGATTCATTCTC
GCTGGAACTCGACATGTTGACAGCTATTTTGCAAGTGATTTTCAATACTG
CCATATTTGCATTCATTACCATGGAAACAGTATGCACCAAGTTGGACTTT
TAAACCAAAATCTGGAAAAATTGCCAATCAaactaaaatttccaaaaatc
ttCATTTCCTAAA

Coding sequence (CDS) from alignment at scaffold_109:394514..394976

>TCONS_00046418 ID=TCONS_00046418|Name=TCONS_00046418|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at scaffold_109:394514..394976 (Clytia hemisphaerica)
TGCATTGGTACAGTCAATACATTTGTTAATGAACTCATCATCAAGAATCT
TTTCAACAAGGTCCTTTGGCTGCACATCAGTGTCAAATTCCATACTTGGC
TTTCCAAACTCAGTAAGGTTTGGCGATGGTTTTATTATCTCTAATTCTGT
CTGAGAGGAAGTTCTCCATTTACAAAAACCAGCATTGTCCTCATCGCTCT
CGACACCTTCGGGATCATAATCACATTCATCATCATTATCACTCAACTCA
TTTTCATCACCACTGGAGAAAAAATCACTTTCACACTCGGATTCATTCTC
GCTGGAACTCGACATGTTGACAGCTATTTTGCAAGTGATTTTCAATACTG
CCATATTTGCATTCATTACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029624XLOC_029624Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046418-exon-scaffold_109-1491911889:394514..394976TCONS_00046418-exon-scaffold_109-1491911889:394514..394976Clytia hemisphaericaexon
TCONS_00046418-exon-scaffold_109-1510915933:394514..394976TCONS_00046418-exon-scaffold_109-1510915933:394514..394976Clytia hemisphaericaexon
TCONS_00046418-exon-scaffold_109-1575043694:394514..394976TCONS_00046418-exon-scaffold_109-1575043694:394514..394976Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046418-proteinTCONS_00046418-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_109supercontigscaffold_109:394514..394976 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.139676	0.408619	0.632594	1.08307	1.31853	1.48845	0.359151	0.50435	0.117702	0.43738	0	0.279071	0	0	0.158625	0.170229	0.209709	0.322417	0	0	0	0	0	0.1456	0	0.267679	0.383047	0	0.310059	0.315901
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046418 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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