TCONS_00046428 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046428
Unique NameTCONS_00046428
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046428 ID=TCONS_00046428|Name=TCONS_00046428|organism=Clytia hemisphaerica|type=transcript|length=365bp
TATGAAATGAATAGTAAccaaagaaatagaaaaatgttGAAGTCATGGAG
AAATAGAAGAAGAGAAGTACAGAATATTTCAAATGCTAATGAAGATGATT
CGGATTCATCTTGTGATATGGATTTGGCAGACAGTGGTGATATTACTACT
ACGAGTGTTGGCCCCAATGATGGTGGTGGTCTGTCAGATGATACTCCCTC
CGATCTCCCTGATATCCTTGATCCCCCAGAAGTTGCTTTTGAGTTGATAG
GTGATGGTAACATTCCAGCTATAGATGGTCACATTCCAGCTATAGATGAT
ATTAATGATGATATTAATGATAATGAAGTTAGCGAACAAAGTTCAGCTGA
ATTTTCTTACTCAGA
Run BLAST on NCBI

protein sequence of TCONS_00046428-protein

>TCONS_00046428-protein ID=TCONS_00046428-protein|Name=TCONS_00046428-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
YEMNSNQRNRKMLKSWRNRRREVQNISNANEDDSDSSCDMDLADSGDITT
TSVGPNDGGGLSDDTPSDLPDILDPPEVAFELIGDGNIPAIDGHIPAIDD
INDDINDNEVSEQSSAEFSYS
Run BLAST on NCBI

transcript from alignment at scaffold_11:68706..69287-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046428 ID=TCONS_00046428|Name=TCONS_00046428|organism=Clytia hemisphaerica|type=transcript|length=582bp|location=Sequence derived from alignment at scaffold_11:68706..69287- (Clytia hemisphaerica)
TATGAAATGAATAGTAACCAAAGAAATAGAAAAATGTGACTACAGTACTT
TGTTTTTATTAAAAGGGCAGTCAACAAGTTTTGAAAGTGAGTCTTCATAG
ACTTAAAAGTTTTCTCAAACTAGTTTTATGCAAAACAGCAGCCTCCCTTT
AGCTTCTATTATTGTTATTATTATTATTTTTATTTCTCATAACAGTATTT
ATAGTTTTATGGTTAATTTAGAACTCTGAGAAATACCTTTTTAAATTTTA
AGGTTGAAGTCATGGAGAAATAGAAGAAGAGAAGTACAGAATATTTCAAA
TGCTAATGAAGATGATTCGGATTCATCTTGTGATATGGATTTGGCAGACA
GTGGTGATATTACTACTACGAGTGTTGGCCCCAATGATGGTGGTGGTCTG
TCAGATGATACTCCCTCCGATCTCCCTGATATCCTTGATCCCCCAGAAGT
TGCTTTTGAGTTGATAGGTGATGGTAACATTCCAGCTATAGATGGTCACA
TTCCAGCTATAGATGATATTAATGATGATATTAATGATAATGAAGTTAGC
GAACAAAGTTCAGCTGAATTTTCTTACTCAGA

Coding sequence (CDS) from alignment at scaffold_11:68706..69287-

>TCONS_00046428 ID=TCONS_00046428|Name=TCONS_00046428|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_11:68706..69287- (Clytia hemisphaerica)
GTTGAAGTCATGGAGAAATAGAAGAAGAGAAGTACAGAATATTTCAAATG
CTAATGAAGATGATTCGGATTCATCTTGTGATATGGATTTGGCAGACAGT
GGTGATATTACTACTACGAGTGTTGGCCCCAATGATGGTGGTGGTCTGTC
AGATGATACTCCCTCCGATCTCCCTGATATCCTTGATCCCCCAGAAGTTG
CTTTTGAGTTGATAGGTGATGGTAACATTCCAGCTATAGATGGTCACATT
CCAGCTATAGATGATATTAATGATGATATTAATGATAATGAAGTTAGCGA
ACAAAGTTCAGCTGAATTTTCTTACTCATATGAAATGAATAGTAACCAAA
GAAATAGAAAAATGTTGAAGTCATGGAGAAATAGAAGAAGAGAAGTACAG
AATATTTCAAATGCTAATGAAGATGATTCGGATTCATCTTGTGATATGGA
TTTGGCAGACAGTGGTGATATTACTACTACGAGTGTTGGCCCCAATGATG
GTGGTGGTCTGTCAGATGATACTCCCTCCGATCTCCCTGATATCCTTGAT
CCCCCAGAAGTTGCTTTTGAGTTGATAGGTGATGGTAACATTCCAGCTAT
AGATGGTCACATTCCAGCTATAGATGATATTAATGATGATATTAATGATA
ATGAAGTTAGCGAACAAAGTTCAGCTGAATTTTCTTACTCATATGAAATG
AATAGTAACCAAAGAAATAGAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029628XLOC_029628Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046428-proteinTCONS_00046428-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046428-exon-scaffold_11-1575043694:69253..69287TCONS_00046428-exon-scaffold_11-1575043694:69253..69287Clytia hemisphaericaexon
TCONS_00046428-exon-scaffold_11-1575043694:68706..69035TCONS_00046428-exon-scaffold_11-1575043694:68706..69035Clytia hemisphaericaexon
TCONS_00046428-exon-scaffold_11-1510915933:69253..69287TCONS_00046428-exon-scaffold_11-1510915933:69253..69287Clytia hemisphaericaexon
TCONS_00046428-exon-scaffold_11-1510915933:68706..69035TCONS_00046428-exon-scaffold_11-1510915933:68706..69035Clytia hemisphaericaexon
TCONS_00046428-exon-scaffold_11-1491911889:69253..69287TCONS_00046428-exon-scaffold_11-1491911889:69253..69287Clytia hemisphaericaexon
TCONS_00046428-exon-scaffold_11-1491911889:68706..69035TCONS_00046428-exon-scaffold_11-1491911889:68706..69035Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:68706..69287 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.257498	0	0	0	0	0	0.191644	0.237382	0.230408	0.757307	0.151251	0.471226	1.29137	1.38584	2.56087	0.699948	0	0.252978	0.659652	0.64351	1.04303	0.237066	0	0.217918	0.31184	0.665608	5.80566	2.57176
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046428 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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