TCONS_00046429 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046429
Unique NameTCONS_00046429
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length93

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046429 ID=TCONS_00046429|Name=TCONS_00046429|organism=Clytia hemisphaerica|type=transcript|length=93bp
CAAATGATTGCATAGATATTCAGATTAATTCAGctaataaaagaaagaaa
aacaaagaaaaaaccgAAAGTAGTCCTGATAAAAAGATAAGGA
Run BLAST on NCBI

transcript from alignment at scaffold_11:77132..83546-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046429 ID=TCONS_00046429|Name=TCONS_00046429|organism=Clytia hemisphaerica|type=transcript|length=6415bp|location=Sequence derived from alignment at scaffold_11:77132..83546- (Clytia hemisphaerica)
CAAATGATTGCATAGATATTCAGGTACATGGACAATTTTTCACAGTGGCT
CATTTTTCTGTTTTTGAATCTGTAGTAAAAATTTACTTCTTATCTTGTCT
GATTCAACAAACGACACACTAGTAAACAGGAAGATCAAATCGAAGTCCTT
GATTGAATGCAACTATATAAATATAATAAACCCTCTTCTTGTAAATATGT
TAGTTAACTCGGAAAAATATAAACAATAAACAAATGTCAATATAATGTAA
GAATGGCACAGTGGCGCAGTCAGTCTTCACCTTGAGCTTTTGCCCAAGGT
TAATACATTTACAAGACCAGCAACAATAGTGTTTCGTAAATCAAACATAA
ACTTTCATACTACTGAGCAACACATCGAGCTCAGCCAAATAATATAGCAA
TAAATATATACATCTCATCATATTCCACTTTCTCATATACAGGTAGAATA
GAATAAGTCAACATAAGCATTTTCCCTTCATCGGGATAAACAAAACGCAT
TAATCAATAGCTCAATTCTCAATCTGTTTCAAAGTCATAATCCCCACTTC
TCATCCACTGTGGTTGATAACATTGTCGGAGTGGGCGCTGGTGTGTGTTC
TCTTGTTGAGGAAGTTGTGGTATTTCCTCTTTGTTTATTTCATTCACCAA
CGGGACTTGGTACCGGCGCGAGCTAAATTACGTCGTGAGATTCTGTAAGG
TCGCGTATATACCTTCGATCTTGACGATGAAGTAACGGTTCCTGGCCTTG
TTCTTGTTGCGTTCGCCTTTTACGAATACCAAATCGCCAGTTGTTAGGTT
CGTAGATATGGCCATGTTACCTTTAGGAGCTTTCGAGGTAGCACTAGGAA
GATGGTTTTTAACGTGTATACTGTCTTGTTGGGCGGGTAGGTTGACATCA
TTCAATTGTAACTGTTCATTCGTAGCTTGATCCCTCTGGAAAAGAATCTC
TCTGGCGGATAAGCCTCGATTTCTGATACGACTGTTCTTAATTTGAACGG
CAGACTGTAATTGTAGATTAGAGATGGGACTGCCTGATGAATCGTACTTT
AATAATTCAATTTCTAGTTCTTGAATGGCTTTATCTACAACACTGTTTGA
GTTTTTGTTTTTGCTATGGCCAAAATCGAGTTTGATACCACGTTGTTGAA
GTGTTAAGTCGTTACGAATGGTTTGGAATCCAGCTGCAGCGTCGATGCAA
ACTGTACTGTTGGGTGAGCGGATGTTGGACGTCGTGACGAGAAGAGCTGT
GCGAAGTGATGGAGCGGTTTCATCGTCAATGATGGATGTGGAGGTAAACG
ATGAATGAACATCTCTGGTGACACAGGTTTTCTGTCAGTTTCGTCGAAGG
ATGTCGGAGAAGAATGCATCACAGCATGGTACAGGATTTCGAGAAGGGTT
GTCTTTCCTTGGGATGTGCTGAACAGATACGTTGTAGGAAGATAACGTCG
ATAAGAAAGTAGAAACTCTTGCTGAAGCTGAAAAATGTCCTTGGCAAAGT
TTATCAAAAGCTTGCACACAAGGTTTTGAATCAGTGAGCAAAGGGTGGAT
TGATTCTCGAGCATATGTTGAAAAGTTGTTGACGGCGGATGCTATGGCTA
GTGCTTCTAATTCACAAGGATACCATTTCAATTGATGTTCTTTGAGTTTA
AAGCTGTAATGGTGTGCGATATGTTGCTTCCCGTCACGATTAACGAAAAG
GGTGGCTCCTTTGTTCACTGGGGATGCATCTGTTGTGAGTGATGACTGAT
CTGATCGTCGAGGAACGGTGAGCGTTTCTGGGTTCTGTAGGGCCATTTGG
GCAGTCTTATAATGACGCAAAAGGGCATCATCCCAATCTATACGTTGGTG
ACCGTCTAAACCTTTAATGGCAGCTTCAAGCGGCGATATTAATGAAGCAT
ACTTTGGGATACATCTGGAGAGAGCTTTAAACGAACTGATATATGAGCAC
ATTGAAGAACATGTCTTTGGTAGTGGAACGACAGCTAAAGCGGATATTTT
GTGATTACAAGGTGATATGGCACCATTGGACCATCTCCATCCTAAGATGA
CGGTAGATTGTGGACAGATGACGGTTTTCATTGGAGAAAGCGTGAGATTG
TTTTCTGAGATGCGTTGAAGGACCCTTTCATAATCACGAAGTAGGTCTGG
GATAGTGTTCACTCCTATGAACAAATCGTCGTGGATGACGGTAAGAAATC
CCCCCGTAATATAGTCACCGAATACTCGAGATGTTAGTTCATTGAGAAAT
TCGGATGCACCGGTGTAGCGGATTATTTTAACTCCCTGTAAATGCTGACC
CCCCAGTTAAAATAAACTAGGAAATAATGACTCCCCTAGAGTAGGAATTT
CCTAGGAAATATTGACTCCCTTAGTAAATAATGACTCCCCGTAAAAAAGC
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTAGGAAATAGCAACTCTAGGGAGTCTTCATTTA
CTAGTTTATTTTGAGGTGGGGAGTCACTATTTACTAGTTTATTATGACTG
GGGAGTCATTATTTAGGGGAGTCAAATTTTTGTGTGACACCGGGCATCCC
CATAGCAGATTGTAAGTAAACTCTCAGTCCTTTAAATGGGGTCACTGTTG
CTAAGTATGGCATGAATTTCTTAGTAACTGGGATTTGAAAGAAGCTCTTA
GTAAAGTCAGTTTTAATGATGTATTTGTAGTTCGACAAACAGTGTAGAAC
ATCATCACTTTTCATTGTTGCAGTAGGTGTGATTCGAACGTATTGACCCA
AGTTGTTGAAAGCTGTAACAAATCGATAGCTCCCGTCTGTTTTTTTACAT
AAGAAGCTAGGGAGCACAAATTTCACATTGACCCCAACGTCCTCAGGTTT
CGCAAGAACGCCTAAACGTTCAAGTTTGTCAGCTTCTTCCTGGAAAAGTT
TAAGGTTCCCTTGATAGTAAAATAGAAGTTTACCGGATGGGACCACTTCT
GTCGCTATAAGCACCAAAATTTGATTGGTAAACCGCTTGATAGCGAGCAT
TGATGTAACGGAACTGTTGTCGTTGGTTTCAGTAGAGGCAGTTTGTGGTT
GTGTTGAAGGTGTTGGGAGGCTATTGTCCTGTCGGATTGGTGTTTCGTCA
GGTACAATGACAGGATGAATGTGGGCAATATGCTGCGACTTTGCGATCTG
GATAGGTTCATCAGTCATATTCGGGATTCTCGCAACGCCGTTGATGACAC
GTGAGATTGATGGATGTATCCAGTCACTTCGATTTTGTGCTGGTGTATGC
GGTTCGATGGCAGCTTCACAATCAAGTTCCTGAAGTGCAGGTGATTCAAA
CTCGATATATTCACCTGGCATTACAATTTTCTCAGAGTCATTACGGAGAA
GCGTAGCGTTGATACGACGGATTTGACGTTGGTTATTTGAGGCATCTCTA
CCTCTGTTCCCGTACGGAATAGTGGAATTCCCAATTGAAATAGTATCAGC
TTTTAAATGGAAATGAATATCGTTTGTTTTGCAAATATCACAGTCTAACC
TTTCAATTACTAACGCTGTAACGGGAAGGTCTAAATTTCCAAAGTTTAAC
GTAAAATAAACTTCTCCTAGTACTGGTAAATTGGACTTGTCGGCTGAGCG
AGCTGAATGGACAGTCTTTTTTATGTCAATTACCGAACGTTTTACGAAAG
CTTGAGACACGACGGACGACGCTGCACCCGTGTGACGATATGACATGGGT
GGTGCTTGTAAAATGCGAAAAAGAAAGGAGGCGTGTCACATTCAACTTTC
TGTTCTTTAGTCTCCAAACAATCGAACTTGGTTTCACTTGTAACGGACAT
GCTCGTTTCGAAAAAATTGATGTCAGAAGATTCATTTTCATTGTCTCCAT
CTGACTCATAGTCAATAGTCACTTGGAACGCTTTAGCCATTTCCATTTTT
TCGAATTTCGAGAGAAAACAGCAGTCATTAATGTTGTGTCCTGCATACTG
TCGCTTTGCGGCTTTGCATAAGGAACAGGCTTTGTTGGGCTTCGATGAAG
ATTGTTGTCGTGAAGATTGTTTTTTATTATGGGTACGACTTCCTGAAGAA
TATTGGTACTTAGATTTCGTGTACTGGATCTGAATTTCTTCTTGTGTGGA
GAGTTCAGTAGGAATGGAGTCCATGGATTGGGAGAGTCGAAGTTGGATGT
CTTTCAGCGTGTACGATTGGAGATCGTGTGTATAAATTCGAGCAACGTAT
GCTGGTAAGCGGCTATCGATGAGCTGTAACCACAAGTAAACTGCCAATCT
CTCGGTGGTGGGAGACATGATTTTGTCCGTTGTAGGTAAAGCTCCATCGT
GGTAGAGACAAGAAGCAACGGTTAGGAGATTGTCCTCTAGGTGAGCAACT
ATTCTCTGATAAAAGGTTTCATAGCGTTCATCTGGTATACGTGTAATGTT
AAACAGACTTAGAAAGTTCGCTTCGGACTGGACGAAGTTGAAATGTTTTC
TAATCCTTTGCAGATCCAGGAGAGACTAGTTGAGTGCTTAATGATTTCGT
TCCGGATTAAAGACGGTGCAAACTGGGCAATAAGTCCCAACATACATTCT
AGCATAATCTTTTTCTGAACAGTGGTCTTACGATTAGGAACATCAGCTGG
GTCATCGGATAATCCTCGATTTTGTACGGATTGGGGTGACCATTCTCCCT
CAAGGAATGACGAAAAATCGTTGCAAAGGCTAAGGTGGTAAAGCATATTT
GATTTCCAGTTGGCAAAGGAGGTGATGGTTTCATTTTCAGTTAACGACCA
TTGTTTCGGTGGACGGAAATGGTCAGCCATTTTGTCAAGAAGAGGTTGTC
TTTATACTCCCAACAATGTCAATAACAATGTTGTGTGTTTTCAATGTCAC
TTTTAGCATTTATCAATCTTGCACCTGTCACGACGACAAAATAGTAAACG
GGAAGATCAAATCGAAGTCCTTGATTGAATGCAACCATATGATAAAAACC
TCTTCTTGTAAATATGTTAGTTAACTCTGAAAAATATAAACAATAAACAA
ATGTCAATATAATGTAAGAATGACACAATGGCGAAAGGTGTTGAACCTTT
CAGACATAAATAAAAAAATTCTTGATATGCCAAAAGAAATTTTGCTTAGT
GATATCAATGTACACTGTTTCCACTTAAAATAAGGTCTGTGATTTAGGTT
CTAGTATTTCTTGTTGGGAAACTGGCCAGGCCTCATTATGACAGGTATAC
TTGACCATTGACCATTTCTAATTTAATGAACTTGTTCAATTATAGATTAA
TTCAGCTAATAAAAGAAAGAAAAACAAAGAAAAAACCGAAAGTAGTCCTG
ATAAAAAGATAAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029629XLOC_029629Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046429-exon-scaffold_11-1575043694:83524..83546TCONS_00046429-exon-scaffold_11-1575043694:83524..83546Clytia hemisphaericaexon
TCONS_00046429-exon-scaffold_11-1575043694:77132..77201TCONS_00046429-exon-scaffold_11-1575043694:77132..77201Clytia hemisphaericaexon
TCONS_00046429-exon-scaffold_11-1510915933:83524..83546TCONS_00046429-exon-scaffold_11-1510915933:83524..83546Clytia hemisphaericaexon
TCONS_00046429-exon-scaffold_11-1510915933:77132..77201TCONS_00046429-exon-scaffold_11-1510915933:77132..77201Clytia hemisphaericaexon
TCONS_00046429-exon-scaffold_11-1491911889:83524..83546TCONS_00046429-exon-scaffold_11-1491911889:83524..83546Clytia hemisphaericaexon
TCONS_00046429-exon-scaffold_11-1491911889:77132..77201TCONS_00046429-exon-scaffold_11-1491911889:77132..77201Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:77132..83546 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046429 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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