TCONS_00046433 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046433
Unique NameTCONS_00046433
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046433 ID=TCONS_00046433|Name=TCONS_00046433|organism=Clytia hemisphaerica|type=transcript|length=498bp
CAATGATCGTGTTGATTCAATAGTTTTGTTCGTGAATATGGATGGATTGC
CCTTGTTCAAATCTAGTCCGATCAACTTATGGCCGATTCTaattcaattt
catattttcaaaccCATCGCTGTGGCATTTTATTGTGGTAAAACTAAACC
ACCTTTTACCGAATTCATGAatgattttgttgttgagatgAATCATTTGA
TACAAAACGGTTTTATTTTCCAGAATGTTCATTATCATGTCTCTTTATTT
TGTTTGACATCAGATTCACCTGCACGATCTGGTATGAAAGGTATTATTCA
ACACACCGGATACTTTTCATGTGAACGCTGCTGTATCAAGGGTGATAGCG
TTAAGGGTAGAATTGTCTTTGATCGAGGACAGGAAGGCGCTAATGTTGCA
CGAACAGATGACGCATTTCGCATGGATCTTTATGCTATACCAGATGAAGA
CGGAAAGCGCCATCAAACCAATGTTTCACTTCTCACCAATCTTCCCAT
Run BLAST on NCBI

protein sequence of TCONS_00046433-protein

>TCONS_00046433-protein ID=TCONS_00046433-protein|Name=TCONS_00046433-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
NDRVDSIVLFVNMDGLPLFKSSPINLWPILIQFHIFKPIAVAFYCGKTKP
PFTEFMNDFVVEMNHLIQNGFIFQNVHYHVSLFCLTSDSPARSGMKGIIQ
HTGYFSCERCCIKGDSVKGRIVFDRGQEGANVARTDDAFRMDLYAIPDED
GKRHQTNVSLLTNLP
Run BLAST on NCBI

transcript from alignment at scaffold_11:67872..68369

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046433 ID=TCONS_00046433|Name=TCONS_00046433|organism=Clytia hemisphaerica|type=transcript|length=498bp|location=Sequence derived from alignment at scaffold_11:67872..68369 (Clytia hemisphaerica)
ATGGGAAGATTGGTGAGAAGTGAAACATTGGTTTGATGGCGCTTTCCGTC
TTCATCTGGTATAGCATAAAGATCCATGCGAAATGCGTCATCTGTTCGTG
CAACATTAGCGCCTTCCTGTCCTCGATCAAAGACAATTCTACCCTTAACG
CTATCACCCTTGATACAGCAGCGTTCACATGAAAAGTATCCGGTGTGTTG
AATAATACCTTTCATACCAGATCGTGCAGGTGAATCTGATGTCAAACAAA
ATAAAGAGACATGATAATGAACATTCTGGAAAATAAAACCGTTTTGTATC
AAATGATTcatctcaacaacaaaatcatTCATGAATTCGGTAAAAGGTGG
TTTAGTTTTACCACAATAAAATGCCACAGCGATGggtttgaaaatatgaa
attgaattAGAATCGGCCATAAGTTGATCGGACTAGATTTGAACAAGGGC
AATCCATCCATATTCACGAACAAAACTATTGAATCAACACGATCATTG

Coding sequence (CDS) from alignment at scaffold_11:67872..68369

>TCONS_00046433 ID=TCONS_00046433|Name=TCONS_00046433|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at scaffold_11:67872..68369 (Clytia hemisphaerica)
GGGAAGATTGGTGAGAAGTGAAACATTGGTTTGATGGCGCTTTCCGTCTT
CATCTGGTATAGCATAAAGATCCATGCGAAATGCGTCATCTGTTCGTGCA
ACATTAGCGCCTTCCTGTCCTCGATCAAAGACAATTCTACCCTTAACGCT
ATCACCCTTGATACAGCAGCGTTCACATGAAAAGTATCCGGTGTGTTGAA
TAATACCTTTCATACCAGATCGTGCAGGTGAATCTGATGTCAAACAAAAT
AAAGAGACATGATAATGAACATTCTGGAAAATAAAACCGTTTTGTATCAA
ATGATTcatctcaacaacaaaatcatTCATGAATTCGGTAAAAGGTGGTT
TAGTTTTACCACAATAAAATGCCACAGCGATGggtttgaaaatatgaaat
tgaattAGAATCGGCCATAAGTTGATCGGACTAGATTTGAACAAGGGCAA
TCCATCCATATTCACGAACAAAACTATTGAATCAACACGATCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029633XLOC_029633Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046433-proteinTCONS_00046433-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046433-exon-scaffold_11-1491911889:67872..68369TCONS_00046433-exon-scaffold_11-1491911889:67872..68369Clytia hemisphaericaexon
TCONS_00046433-exon-scaffold_11-1510915933:67872..68369TCONS_00046433-exon-scaffold_11-1510915933:67872..68369Clytia hemisphaericaexon
TCONS_00046433-exon-scaffold_11-1575043694:67872..68369TCONS_00046433-exon-scaffold_11-1575043694:67872..68369Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:67872..68369 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.135985	0	0	0	0	0	0.128137	0.248745	0.0817577	0	0.0847882	0.27883	1.34652	1.10587	0.56674	0.260994	0	0.474767	0	0.563018	2.17543	0	0.11763	0.336658	0	8.85654	3.88701
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046433 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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