TCONS_00046441 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046441
Unique NameTCONS_00046441
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length822

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046441 ID=TCONS_00046441|Name=TCONS_00046441|organism=Clytia hemisphaerica|type=transcript|length=822bp
CTACAGAAACACTGTATTCAATTCCACCTGCAGAGAAACCCATCATAGAA
TCTGGAAAACCCCAAATGGCAATCTGCATGTCTGTTGGAAATAGTACTTC
AAAAGAAATCCAAAAGTTCACCACACCGCAAAATCAGAAATCCTTTAATC
TCAGTCGAAACTCGTCTAAACTTCTACAAGTCTCAATCATGGAACCAGAA
GAACATGAAAATACTGAAGAATCCTTCACCACCTCACCAGTAGTGGCAAA
ACAAAAAACTGGTCAGGATGTAACGAGaacaaagaaaagttttgaagAGA
TTTCGATGCAAGTTGAGAATGAGAGCCCTTCCAAagaaaagaatgtttca
gcaaATGAACCAAGAAGTGCGACTCCAAAAAAGAATCTAACAGaatttaT
TTCAACTATTGGTCTCTCAAATGTCACacaagaaaatgttcaagaaaaac
CAGTTAAACAAAGCATGGAAACTCAAGCTGGTAGTGCAAAGGTGGTCAAG
AAAAGACGGTCTAGgctaaaaaataacaacaagGGACCCACTATACTGGA
AGAAGGTGTATCAAATCGTTCAATGAGAACTCGATCGCGGTCAAACAAAA
CAACTGATATTCCGCTGGCAGCTTATTGTCGCATGATCAATAAATCCATC
AACCAGACAATGGATGTTAACCAGGATGATGCTGGTGTTGAAAAACATCC
ATCTCCCATATCAAAAGCTTCTGCAAAGACCAACAACACTAcctttaaca
ataaaaagaatgaaagtattacaaagaaaaacaatCAAAGTATTCTCAAG
AGAAACAATAAGAAGAATATCA
Run BLAST on NCBI

transcript from alignment at scaffold_110:38955..41695+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046441 ID=TCONS_00046441|Name=TCONS_00046441|organism=Clytia hemisphaerica|type=transcript|length=2741bp|location=Sequence derived from alignment at scaffold_110:38955..41695+ (Clytia hemisphaerica)
CTACAGAAACACTGTATTCAATTCCACCTGCAGAGAAACCCATCATAGAA
TCTGGAAAACCCCAAATGGCAATCTGCATGTCTGTTGGAAATAGTACTTC
AAAAGGTTTGAGATGTTTCACTATCTATTATTGCAGTTTAAGCTATTGTC
ATAATTCAGGAATTTATAAAAGTTATGTCCTGTTTTATTAACAATATGAT
TGTTTTCATATTGCAAATAAACACTGTATTTCCTTCATATTATATTGTAA
TTCATTGATCACTTCGATTAATGTTTTATGTATtatattttatgtatttt
atgtATGTCTTATGTTTTATGAAAAGTGAGAGttcgaaatattgtttaaa
ataaaatttatgtgaAGAATGACCATTTGAACGTACATaaatcattgaaa
acattcATCTGAAGTATGTCAATTCAAGAATTCGATTAAtgtttttctac
atctttttcAGAAATCCAAAAGTTCACCACACCGCAAAATCAGAAATCCT
TTAATCTCAGTCGAAACTCGTCTAAACTTCTACAAGTCTCAATCATGGAA
CCAGAAGAACATGAAAGTATGAACTAGCAATTTTTAACACGTCTGGTACC
TTAAAGTTGTTCAGTCTCAAAATTCACCAGGAAAAGTTCCAGGAATGTGC
TGTGTAtaatccattttccgtctctGACAAAAAACCTTGCTTTGGCCAAT
GCTTAATAGGAAACTTAACTTTTTCAGACCTTTATCCCTCCATGTGAATT
AATAGTAAATGTCTGCACAAATAAggtgtttattttgaaatgcaaaTTGT
TACACATaaaagaaattcatcaaaacaaaacaaatttattcatatatcaa
ttttaaaaacacatTTATTTTCTGTAAAATACGAAACTTTTCGTATGACA
AAGTTACATTATAAAGTAGGTATATGTTGACATGGCTTGttgattgataa
atttattcatcTTCATTGATAGTGAAGTAAAGTAAAGGATGGATTCCACT
TTTTTAGATACTGAAGAATCCTTCACCACCTCACCAGTAGTGGCAAAACA
AAAAACTGGTCAGGATGTAACGAGaacaaagaaaagttttgaaggTAAGT
AAGTTTAACAAGACAAGTGCTTTATCAGTAAAGGCGACCATGAAAAATTA
CTCTAATCAAAAGTCCAACACCACTTTCTTTTGCTGTCTTTGAACTTCTA
ACTATGAGTTTGTTAGTAACGATTAAAAAATTACAGTCAGAATTTAAATC
TGTTAAATTTACTCTTTCAGAGATTTCGATGCAAGTTGAGAATGAGAGCC
CTTCCAAagaaaagaatgtttcagcaaATGAACCAAGAAGTGCGACTCCA
AAAAAGAATCTAACAGGTGAATTATAATTCCTTCAAACCTAGAAAGATTA
ATAGTGAGTCTTGTTCTACCATTTCATTAAGATTGTTGAGTCATATGTTT
TGTGAAAGTTAGGAATAACAAATTCTGTCTGAAATGGCAATGGCCTAAAA
CTAAAGTTTGATATTAAAGCGTCTATTAAACATGAGATTTTTGACACCAC
TATAGTATCATCTACTCTCATAGTTTGAAATTGATTCAAAAgaccttttt
cataaattatgtcacAAGCAACGCTTACCTCCTTTTCAAAGTATTCCTTT
GGTAATTGATTCTCAGAGGAGCCCATTAGCAATTTACTTAAAGGATATAA
TCATCTTtttaatggtttcaaaacgaggcagcgATTGAACCAAGAACTCA
AAATAGTTCATGAAAAAGCCTAATAATCCTTACCTGTTTCTCACTCACCC
TTTCGAATTCGAAACTAACTTCATAACTCCATTCATAATGGAACCAACAC
aactttatttcaatttttcatagaatttaTTTCAACTATTGGTCTCTCAA
ATGTCACacaagaaaatgttcaagaaaaacCAGTTAAACAAAGCATGGAA
ACTCAAGCTGGTAGTGCAAAGGTGGTCAAGAAAAGACGGTCTAGgctaaa
aaataacaacaagGGACCCACTATACTGGAAGAAGGTGTATCAAATCGTT
CAATGAGAACTCGATCGCGGTCAAACAAAACAACTGATATTCCGCTGGCA
GCTTATTGTCGCATGATCAATAAATCCATCAACCAGACAATGGATGTTAA
CCAGGATGATGCTGGTGTTGAAAAACATCCATCTCCCATATCAAAAGGTT
TGCATATCAAGATTTTGATATAATGATATAATGATTCTCCTTGCAGAGGA
TGCTAGATTAGGAGTCGTCTCGTTATAACTGTCTTACACTATAATTTATA
CTGCCTGCTCTGGCTCACTTTGATATCATGGTATGTTCTCTAGAAGCAGA
ATCTGCGCACTTTTTGGTATTTACATGTCGACGAAACATAGATGGATTTA
ACAGGCTAGGTATATAAAAGGCTATATAATATTAGCAGTCATTGAAAGAG
TGGCTGACACGTTGtataaattaattttaaaaccaaaagaaATTGCTACT
GAGATTTTGAAATTAACCTGTCAAATTACTTTAATTAATAAATATTAGAC
TTCATTGACACAAAAATTCATACGCACCTAGTTTTAGGATTTTCAGCACG
CTTTAATTGATCTGAATATTCTACTTAATATTGTAGCTTCTGCAAAGACC
AACAACACTAcctttaacaataaaaagaatgaaagtattacaaagaaaaa
caatCAAAGTATTCTCAAGAGAAACAATAAGAAGAATATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029641XLOC_029641Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046441-exon-scaffold_110-1491911889:38955..39059TCONS_00046441-exon-scaffold_110-1491911889:38955..39059Clytia hemisphaericaexon
TCONS_00046441-exon-scaffold_110-1510915933:38955..39059TCONS_00046441-exon-scaffold_110-1510915933:38955..39059Clytia hemisphaericaexon
TCONS_00046441-exon-scaffold_110-1575043694:38955..39059TCONS_00046441-exon-scaffold_110-1575043694:38955..39059Clytia hemisphaericaexon
TCONS_00046441-exon-scaffold_110-1491911889:39416..39520TCONS_00046441-exon-scaffold_110-1491911889:39416..39520Clytia hemisphaericaexon
TCONS_00046441-exon-scaffold_110-1510915933:39416..39520TCONS_00046441-exon-scaffold_110-1510915933:39416..39520Clytia hemisphaericaexon
TCONS_00046441-exon-scaffold_110-1575043694:39416..39520TCONS_00046441-exon-scaffold_110-1575043694:39416..39520Clytia hemisphaericaexon
TCONS_00046441-exon-scaffold_110-1491911889:39962..40048TCONS_00046441-exon-scaffold_110-1491911889:39962..40048Clytia hemisphaericaexon
TCONS_00046441-exon-scaffold_110-1510915933:39962..40048TCONS_00046441-exon-scaffold_110-1510915933:39962..40048Clytia hemisphaericaexon
TCONS_00046441-exon-scaffold_110-1575043694:39962..40048TCONS_00046441-exon-scaffold_110-1575043694:39962..40048Clytia hemisphaericaexon
TCONS_00046441-exon-scaffold_110-1491911889:40225..40320TCONS_00046441-exon-scaffold_110-1491911889:40225..40320Clytia hemisphaericaexon
TCONS_00046441-exon-scaffold_110-1510915933:40225..40320TCONS_00046441-exon-scaffold_110-1510915933:40225..40320Clytia hemisphaericaexon
TCONS_00046441-exon-scaffold_110-1575043694:40225..40320TCONS_00046441-exon-scaffold_110-1575043694:40225..40320Clytia hemisphaericaexon
TCONS_00046441-exon-scaffold_110-1491911889:40828..41151TCONS_00046441-exon-scaffold_110-1491911889:40828..41151Clytia hemisphaericaexon
TCONS_00046441-exon-scaffold_110-1510915933:40828..41151TCONS_00046441-exon-scaffold_110-1510915933:40828..41151Clytia hemisphaericaexon
TCONS_00046441-exon-scaffold_110-1575043694:40828..41151TCONS_00046441-exon-scaffold_110-1575043694:40828..41151Clytia hemisphaericaexon
TCONS_00046441-exon-scaffold_110-1491911889:41591..41695TCONS_00046441-exon-scaffold_110-1491911889:41591..41695Clytia hemisphaericaexon
TCONS_00046441-exon-scaffold_110-1510915933:41591..41695TCONS_00046441-exon-scaffold_110-1510915933:41591..41695Clytia hemisphaericaexon
TCONS_00046441-exon-scaffold_110-1575043694:41591..41695TCONS_00046441-exon-scaffold_110-1575043694:41591..41695Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_110supercontigscaffold_110:38955..41695 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.379985	0.392787	0.363871	0.345454	7.2536	5.94592	3.13227	5.38466	0.87888	1.75039	4.8515	1.46797	0.66173	1.0867	1.52307	1.33845	1.08937	1.81556	1.16014	1.91367	0	0.925353	0.318372	0.684376	5.22187	4.12851	0.55016	0.324947	1.21694	0.544977
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046441 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top