|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046450 ID=TCONS_00046450|Name=TCONS_00046450|organism=Clytia hemisphaerica|type=transcript|length=2380bp AACAGGACGAGGTCGCTTACTTGAGGatcatttaaagaaaaacacttGTA TAGCACAGATGACAGTATTATAGTATAGTAGAAATTCTTTCTAAAAACGA AAATCTTTGAGTTAAAATAAATATGTTGAAGTGGACGAGTAAATTTAAAT ATGGCGGATCAGTGCCAGAGGGATTGGATAGAATTGATGCGATGTCTACT CCAAGAAGAGAGACACAAAGTTGTCGGATCAGAGCCGAAGCAAGGAGTAA CCCATCATCACCAAAGAGTCGAAGCCGTAAAACGAACGCTGTAATGTACA GATCACAAAGCGAGCTTGCTGATCGAAGACATTCGTACGAAAACGACGAA CAATACCATAAAATGCGACAACAAAAATCGAAATCGGCAATTCTCGAGAA TTTGAGTTCGCCAGCAATTAATAGTTCACCGTTTATTAATTTACAGTATG AAGACTTATATAAAAGGTTTGAGCAAGCACACTTAAGTGCACCAAGCTCG CCACAATCAGATAACGAAGACTTTAACTTAACACCAAAAACAAGTCGACA AACAAGTTGTTCAAATTCCTTACGGAAAAATTCACCTGCAAATTTGCCGT GCATTGAAGAAGCAGCggaaaatgatgaacttttatCAATTGCTGATTCA GGCATTTGCGACGAAGAATATAACGATCATAAGAAACATTATTTTGAGCC GTGTAAATTCGGTGATGAAGCAAACGCCAAAAACCAACAACATAATGAGA ACACAGACAATGAAATCTTTAGAAAATATAGTCCCTGTCCGCGATCTTTG TCCTTACCGACGGGAAAAACGAACAATTTTACACAAAAATTACAAAGGAT GGAGAGTTCCGATGAAACAGACAGTAGTTCTGATAATGAACATATATCTT TCGAATGTCCTCGCTCATCTTCACCAAAACATATAGACATTGATAGTAAA AACCAAGAATTATATTCAAAATTAAAAGCTGATTTGGAAAGTACAGCTAT GGGAAAGAAGTCAGTTAAACGAGATATACCACATTCTTTAATGTCTTCCA TGTTATGGAAAGGTAACACAAGCAACCAACCACCATCAAGTACAGGTATC TACACCACAGTACCACCAAACAGATACGGTCGCCGCAACAAAGACTTGAT GTCTCAACTGAGCAGTAACAACAGTAGCACACCAAGCACACCTTCACCAC CATCCTCACCTAAATCACCAGGAAGTCCACGTGAATTCAAAGTCAGTTTA GATGTCTCCCATTACGCACCAGATGAAATTCTGGTCACATTGGAAGATGG TAAACTAGTGGTCAACGGTAAACATTTCGCTGAATCGGAATATGGGTTCG AATCCTTACAATTCCACCGACGTTATCCGATCCCTGATGGGATTAAGAAA GCTGACATCAAATCAACCATTACCGATGAAGGAATCTTGGTGATTACTGG CCGCGTTAATGAGCCGATGATCGAAGAACCAGCCTTACGGCGTTCATTGT CCTCTTCTGGACACACTACACCTGAAATTATGCTGAGTGGTGAGCACACT AAACTGTCACCGTCACCATCAAGAAGATCAATCGCGACTTCAGACTACTC GGAAGACTCGCGATCCAGACTCAGTGAAGATTCCCGATCCATCTCTTCAA ACATCTCCGATAATGATTTTCACGAAACAGCTGACAACACTTATATGTTG ACAGTCAACTGCCGTGGATACGATCCCCAAGATTTAGATATCAAAATTCA AAGTCGTGAATTGATCATCCACGgacgtcaaaaaatctgttCCGTTGAGA ATGGTCATGAACGTGTCCGACATAAAGAGTTCAACAAGCGATACGCCGTA CCCCGTAATGCAAACTGTCACCAAATCATGTCCAGATTTACGGAAGACGA ACAATTAGTTGTCGAAATTAAAAAATCGTCAACAATCAAGAGAGGTATCA TCCGAGAGGATATTCTTGATGACGAGTAAAAAAGACATTGGAATATTCCT GCTCCTTCCGTTTGAGTCAATTCCTGATCAAAGACAATGAGAAATACTTT TCAATAAGGAAGGAAGTACATTAACGTACAATTCCGTAAAAGCTTTCGTT GAAATATTGTCATTGCTACAAGAaaacacaaacttttttttgacaattAC ATCCTTTTATAGAAAACActatttaagaatatttttaaaaaacctctttt ttcaaaaatgttacaaaaatttttttaaagaaatttagcTGGATTCTGAA ATTtccctttttaaaaatatttacttttttcaaaatatttgtatatattt tacATATAAACTACAAATTTTATACTATTATAGCATAGTTATTAAATAAG AAAAGTATTTTTAACCCCTTAAAAATTACA Run BLAST on NCBI protein sequence of Heat shock protein >TCONS_00046450-protein ID=TCONS_00046450-protein|Name=Heat shock protein|organism=Clytia hemisphaerica|type=polypeptide|length=618bp
MLKWTSKFKYGGSVPEGLDRIDAMSTPRRETQSCRIRAEARSNPSSPKSR SRKTNAVMYRSQSELADRRHSYENDEQYHKMRQQKSKSAILENLSSPAIN SSPFINLQYEDLYKRFEQAHLSAPSSPQSDNEDFNLTPKTSRQTSCSNSL RKNSPANLPCIEEAAENDELLSIADSGICDEEYNDHKKHYFEPCKFGDEA NAKNQQHNENTDNEIFRKYSPCPRSLSLPTGKTNNFTQKLQRMESSDETD SSSDNEHISFECPRSSSPKHIDIDSKNQELYSKLKADLESTAMGKKSVKR DIPHSLMSSMLWKGNTSNQPPSSTGIYTTVPPNRYGRRNKDLMSQLSSNN SSTPSTPSPPSSPKSPGSPREFKVSLDVSHYAPDEILVTLEDGKLVVNGK HFAESEYGFESLQFHRRYPIPDGIKKADIKSTITDEGILVITGRVNEPMI EEPALRRSLSSSGHTTPEIMLSGEHTKLSPSPSRRSIATSDYSEDSRSRL SEDSRSISSNISDNDFHETADNTYMLTVNCRGYDPQDLDIKIQSRELIIH GRQKICSVENGHERVRHKEFNKRYAVPRNANCHQIMSRFTEDEQLVVEIK KSSTIKRGIIREDILDDE Run BLAST on NCBI transcript from alignment at scaffold_110:127751..130992- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046450 ID=TCONS_00046450|Name=TCONS_00046450|organism=Clytia hemisphaerica|type=transcript|length=3242bp|location=Sequence derived from alignment at scaffold_110:127751..130992- (Clytia hemisphaerica) AACAGGACGAGGTCGCTTACTTGAGGATCATTTAAAGAAAAACACTTGTA
TAGCACAGATGACAGTATTATAGTATAGTAGAAATTCTTTCTAAAAACGA
AAATCTTTGAGTTAAAATAAATATGTTGAAGTGGACGAGTAAATTTAAAT
ATGGCGGATCAGTGCCAGAGGGATTGGATAGAATTGATGCGATGTCTACT
CCAAGAAGAGAGACACAAAGTTGTCGGATCAGAGCCGAAGCAAGGAGTAA
CCCATCATCACCAAAGAGTCGAAGCCGTAAAACGAACGCTGTAATGTACA
GATCACAAAGCGAGCTTGCTGATCGAAGACATTCGTACGAAAACGACGAA
CAATACCATAAAATGCGACAACAAAAATCGAAATCGGCAATTCTCGAGAA
TTTGAGTTCGCCAGCAATTAATAGTTCACCGTTTATTAATTTACAGTATG
AAGACTTATATAAAAGGTTTGAGCAAGCACACTTAAGTGCACCAAGCTCG
CCACAATCAGATAACGAAGACTTTAACTTAACACCAAAAACAAGTCGACA
AACAAGTTGTTCAAATTCCTTACGGAAAAATTCACCTGCAAATTTGCCGT
GCATTGAAGAAGCAGCGGAAAATGATGAACTTTTATCAATTGCTGATTCA
GGCATTTGCGACGAAGAATATAACGATCATAAGAAACATTATTTTGAGCC
GTGTAAATTCGGTGATGAAGCAAACGCCAAAAACCAACAACATAATGAGA
ACACAGACAATGAAATCTTTAGAAAATATAGTCCCTGTCCGCGATCTTTG
TCCTTACCGACGGGAAAAACGAACAATTTTACACAAAAATTACAAAGGAT
GGAGAGTTCCGATGAAACAGACAGTAGTTCTGATAATGAACATATATCTT
TCGAATGTCCTCGCTCATCTTCACCAAAACATATAGACATTGATAGTAAA
AACCAAGAATTATATTCAAAATTAAAAGCTGATTTGGAAAGTACAGCTAT
GGGAAAGAAGTCAGTTAAACGAGATATACCACATTCTTTAATGTAAGTTC
AAAAATAAAATAGTACTCACGAAATTTTTAAATATAAGTAGAGGGGTCGA
AAGGGTCATCATTTTATTCGAGTTAAAACGAATTGAACTCGATCATATGA
TATTGAGTAATATTGTAGATTTCAAAAAGTTTGTGATATTACAATCGGAC
ATCGTTGCTAGTTAAATGATTTTTTCCGGACGTTGTTAGGAAAAAGGTTG
TTTCTTATGACGTCATTCTGATGTCCGTAATTATGACCAATGAGAATATC
GCTTTAAAAAGCTTCAATGTTACAAATTAGGATTCTTCCGAGTCTTTGAA
ACACTATTTTCTCATACTGTTACAACTAACGTTACCAGCGCAACCGAAAT
TTTTAAAACATTGTAAAATCATGCGTTTTTCTGATAACAAGTAACGACCA
AAAGGAAGATAAAATTCCGACAAAGTCTCACGCGTAGCTGAAGAATTTTA
ATTTGTAAATTTGATTAAGAAAAACCCTACCGAACTTCAAGAAAACACAT
GATACCAGTTCAAGGGAAAGAAAAAAAGTCCAACAATTAGCACCGCCATG
CTAGCACTGAGTGTTAATTGGTCACCTTACATAACTAGATAATTAAAGGC
GCTGTAGGGAAGAGGTCGCGGTTTGAAATATTTCAAATGATATGGTTTTT
CAGATACTATAGTGAATATTGTGAAAGAAATTATAAGTCAATCAATCAAT
GAAAGAAAAAAAATGAACCATGAGTTGACCTGTTAAGTGACGCCTCATAC
ATATAAAAATTCCGTTCGAACTACAAGGTTTAATGCTTTACGCAATAGCT
TGATTGTATGTTACATGAAAATTTAATCAATTTATTCATTCTTATCATTT
ATAGGTCTTCCATGTTATGGAAAGGTAACACAAGCAACCAACCACCATCA
AGTACAGGTATCTACACCACAGTACCACCAAACAGATACGGTCGCCGCAA
CAAAGACTTGATGTCTCAACTGAGCAGTAACAACAGTAGCACACCAAGCA
CACCTTCACCACCATCCTCACCTAAATCACCAGGAAGTCCACGTGAATTC
AAAGTCAGTTTAGATGTCTCCCATTACGCACCAGATGAAATTCTGGTCAC
ATTGGAAGATGGTAAACTAGTGGTCAACGGTAAACATTTCGCTGAATCGG
AATATGGGTTCGAATCCTTACAATTCCACCGACGTTATCCGATCCCTGAT
GGGATTAAGAAAGCTGACATCAAATCAACCATTACCGATGAAGGAATCTT
GGTGATTACTGGCCGCGTTAATGAGCCGATGATCGAAGAACCAGCCTTAC
GGCGTTCATTGTCCTCTTCTGGACACACTACACCTGAAATTATGCTGAGT
GGTGAGCACACTAAACTGTCACCGTCACCATCAAGAAGATCAATCGCGAC
TTCAGACTACTCGGAAGACTCGCGATCCAGACTCAGTGAAGATTCCCGAT
CCATCTCTTCAAACATCTCCGATAATGATTTTCACGAAACAGCTGACAAC
ACTTATATGTTGACAGTCAACTGCCGTGGATACGATCCCCAAGATTTAGA
TATCAAAATTCAAAGTCGTGAATTGATCATCCACGGACGTCAAAAAATCT
GTTCCGTTGAGAATGGTCATGAACGTGTCCGACATAAAGAGTTCAACAAG
CGATACGCCGTACCCCGTAATGCAAACTGTCACCAAATCATGTCCAGATT
TACGGAAGACGAACAATTAGTTGTCGAAATTAAAAAATCGTCAACAATCA
AGAGAGGTATCATCCGAGAGGATATTCTTGATGACGAGTAAAAAAGACAT
TGGAATATTCCTGCTCCTTCCGTTTGAGTCAATTCCTGATCAAAGACAAT
GAGAAATACTTTTCAATAAGGAAGGAAGTACATTAACGTACAATTCCGTA
AAAGCTTTCGTTGAAATATTGTCATTGCTACAAGAAAACACAAACTTTTT
TTTGACAATTACATCCTTTTATAGAAAACACTATTTAAGAATATTTTTAA
AAAACCTCTTTTTTCAAAAATGTTACAAAAATTTTTTTAAAGAAATTTAG
CTGGATTCTGAAATTTCCCTTTTTAAAAATATTTACTTTTTTCAAAATAT
TTGTATATATTTTACATATAAACTACAAATTTTATACTATTATAGCATAG
TTATTAAATAAGAAAAGTATTTTTAACCCCTTAAAAATTACA Coding sequence (CDS) from alignment at scaffold_110:127751..130992- >TCONS_00046450 ID=TCONS_00046450|Name=TCONS_00046450|organism=Clytia hemisphaerica|type=CDS|length=3714bp|location=Sequence derived from alignment at scaffold_110:127751..130992- (Clytia hemisphaerica) GTCTTCCATGTTATGGAAAGGTAACACAAGCAACCAACCACCATCAAGTA CAGGTATCTACACCACAGTACCACCAAACAGATACGGTCGCCGCAACAAA GACTTGATGTCTCAACTGAGCAGTAACAACAGTAGCACACCAAGCACACC TTCACCACCATCCTCACCTAAATCACCAGGAAGTCCACGTGAATTCAAAG TCAGTTTAGATGTCTCCCATTACGCACCAGATGAAATTCTGGTCACATTG GAAGATGGTAAACTAGTGGTCAACGGTAAACATTTCGCTGAATCGGAATA TGGGTTCGAATCCTTACAATTCCACCGACGTTATCCGATCCCTGATGGGA TTAAGAAAGCTGACATCAAATCAACCATTACCGATGAAGGAATCTTGGTG ATTACTGGCCGCGTTAATGAGCCGATGATCGAAGAACCAGCCTTACGGCG TTCATTGTCCTCTTCTGGACACACTACACCTGAAATTATGCTGAGTGGTG AGCACACTAAACTGTCACCGTCACCATCAAGAAGATCAATCGCGACTTCA GACTACTCGGAAGACTCGCGATCCAGACTCAGTGAAGATTCCCGATCCAT CTCTTCAAACATCTCCGATAATGATTTTCACGAAACAGCTGACAACACTT ATATGTTGACAGTCAACTGCCGTGGATACGATCCCCAAGATTTAGATATC AAAATTCAAAGTCGTGAATTGATCATCCACGGACGTCAAAAAATCTGTTC CGTTGAGAATGGTCATGAACGTGTCCGACATAAAGAGTTCAACAAGCGAT ACGCCGTACCCCGTAATGCAAACTGTCACCAAATCATGTCCAGATTTACG GAAGACGAACAATTAGTTGTCGAAATTAAAAAATCGTCAACAATCAAGAG AGGTATCATCCGAGAGGATATTCTTGATGACGAGTAAATGTTGAAGTGGA CGAGTAAATTTAAATATGGCGGATCAGTGCCAGAGGGATTGGATAGAATT GATGCGATGTCTACTCCAAGAAGAGAGACACAAAGTTGTCGGATCAGAGC CGAAGCAAGGAGTAACCCATCATCACCAAAGAGTCGAAGCCGTAAAACGA ACGCTGTAATGTACAGATCACAAAGCGAGCTTGCTGATCGAAGACATTCG TACGAAAACGACGAACAATACCATAAAATGCGACAACAAAAATCGAAATC GGCAATTCTCGAGAATTTGAGTTCGCCAGCAATTAATAGTTCACCGTTTA TTAATTTACAGTATGAAGACTTATATAAAAGGTTTGAGCAAGCACACTTA AGTGCACCAAGCTCGCCACAATCAGATAACGAAGACTTTAACTTAACACC AAAAACAAGTCGACAAACAAGTTGTTCAAATTCCTTACGGAAAAATTCAC CTGCAAATTTGCCGTGCATTGAAGAAGCAGCGGAAAATGATGAACTTTTA TCAATTGCTGATTCAGGCATTTGCGACGAAGAATATAACGATCATAAGAA ACATTATTTTGAGCCGTGTAAATTCGGTGATGAAGCAAACGCCAAAAACC AACAACATAATGAGAACACAGACAATGAAATCTTTAGAAAATATAGTCCC TGTCCGCGATCTTTGTCCTTACCGACGGGAAAAACGAACAATTTTACACA AAAATTACAAAGGATGGAGAGTTCCGATGAAACAGACAGTAGTTCTGATA ATGAACATATATCTTTCGAATGTCCTCGCTCATCTTCACCAAAACATATA GACATTGATAGTAAAAACCAAGAATTATATTCAAAATTAAAAGCTGATTT GGAAAGTACAGCTATGGGAAAGAAGTCAGTTAAACGAGATATACCACATT CTTTAATGTCTTCCATGTTATGGAAAGGTAACACAAGCAACCAACCACCA TCAAGTACAGGTATCTACACCACAGTACCACCAAACAGATACGGTCGCCG CAACAAAGACTTGATGTCTCAACTGAGCAGTAACAACAGTAGCACACCAA GCACACCTTCACCACCATCCTCACCTAAATCACCAGGAAGTCCACGTGAA TTCAAAGTCAGTTTAGATGTCTCCCATTACGCACCAGATGAAATTCTGGT CACATTGGAAGATGGTAAACTAGTGGTCAACGGTAAACATTTCGCTGAAT CGGAATATGGGTTCGAATCCTTACAATTCCACCGACGTTATCCGATCCCT GATGGGATTAAGAAAGCTGACATCAAATCAACCATTACCGATGAAGGAAT CTTGGTGATTACTGGCCGCGTTAATGAGCCGATGATCGAAGAACCAGCCT TACGGCGTTCATTGTCCTCTTCTGGACACACTACACCTGAAATTATGCTG AGTGGTGAGCACACTAAACTGTCACCGTCACCATCAAGAAGATCAATCGC GACTTCAGACTACTCGGAAGACTCGCGATCCAGACTCAGTGAAGATTCCC GATCCATCTCTTCAAACATCTCCGATAATGATTTTCACGAAACAGCTGAC AACACTTATATGTTGACAGTCAACTGCCGTGGATACGATCCCCAAGATTT AGATATCAAAATTCAAAGTCGTGAATTGATCATCCACGGACGTCAAAAAA TCTGTTCCGTTGAGAATGGTCATGAACGTGTCCGACATAAAGAGTTCAAC AAGCGATACGCCGTACCCCGTAATGCAAACTGTCACCAAATCATGTCCAG ATTTACGGAAGACGAACAATTAGTTGTCGAAATTAAAAAATCGTCAACAA TCAAGAGAGGTATCATCCGAGAGGATATTCTTGATGACGAGTAAATGTTG AAGTGGACGAGTAAATTTAAATATGGCGGATCAGTGCCAGAGGGATTGGA TAGAATTGATGCGATGTCTACTCCAAGAAGAGAGACACAAAGTTGTCGGA TCAGAGCCGAAGCAAGGAGTAACCCATCATCACCAAAGAGTCGAAGCCGT AAAACGAACGCTGTAATGTACAGATCACAAAGCGAGCTTGCTGATCGAAG ACATTCGTACGAAAACGACGAACAATACCATAAAATGCGACAACAAAAAT CGAAATCGGCAATTCTCGAGAATTTGAGTTCGCCAGCAATTAATAGTTCA CCGTTTATTAATTTACAGTATGAAGACTTATATAAAAGGTTTGAGCAAGC ACACTTAAGTGCACCAAGCTCGCCACAATCAGATAACGAAGACTTTAACT TAACACCAAAAACAAGTCGACAAACAAGTTGTTCAAATTCCTTACGGAAA AATTCACCTGCAAATTTGCCGTGCATTGAAGAAGCAGCGGAAAATGATGA ACTTTTATCAATTGCTGATTCAGGCATTTGCGACGAAGAATATAACGATC ATAAGAAACATTATTTTGAGCCGTGTAAATTCGGTGATGAAGCAAACGCC AAAAACCAACAACATAATGAGAACACAGACAATGAAATCTTTAGAAAATA TAGTCCCTGTCCGCGATCTTTGTCCTTACCGACGGGAAAAACGAACAATT TTACACAAAAATTACAAAGGATGGAGAGTTCCGATGAAACAGACAGTAGT TCTGATAATGAACATATATCTTTCGAATGTCCTCGCTCATCTTCACCAAA ACATATAGACATTGATAGTAAAAACCAAGAATTATATTCAAAATTAAAAG CTGATTTGGAAAGTACAGCTATGGGAAAGAAGTCAGTTAAACGAGATATA CCACATTCTTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00046450-exon-scaffold_110-1575043694:129951..130992 | TCONS_00046450-exon-scaffold_110-1575043694:129951..130992 | Clytia hemisphaerica | exon |
TCONS_00046450-exon-scaffold_110-1575043694:127751..129088 | TCONS_00046450-exon-scaffold_110-1575043694:127751..129088 | Clytia hemisphaerica | exon |
TCONS_00046450-exon-scaffold_110-1510915933:129951..130992 | TCONS_00046450-exon-scaffold_110-1510915933:129951..130992 | Clytia hemisphaerica | exon |
TCONS_00046450-exon-scaffold_110-1510915933:127751..129088 | TCONS_00046450-exon-scaffold_110-1510915933:127751..129088 | Clytia hemisphaerica | exon |
TCONS_00046450-exon-scaffold_110-1491911889:129951..130992 | TCONS_00046450-exon-scaffold_110-1491911889:129951..130992 | Clytia hemisphaerica | exon |
TCONS_00046450-exon-scaffold_110-1491911889:127751..129088 | TCONS_00046450-exon-scaffold_110-1491911889:127751..129088 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_110 | supercontig | scaffold_110:127751..130992 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
|