TCONS_00046458 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046458
Unique NameTCONS_00046458
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length343

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046458 ID=TCONS_00046458|Name=TCONS_00046458|organism=Clytia hemisphaerica|type=transcript|length=343bp
ATCGCTTTGGATAAATGGATGTCAGAATATTACTTGTCCGATATCAAGAA
AGCAAACCCGAAAGCTAAAATCCACAAGCACTCAAAACCATTGGATTCTG
GGATAGGTTTCATTACTCACgatgaaaatatattcaaaatgaagaagtTT
TTCCATGAACAAAATGTGGATAACATGATCAGACTGTGGTACGATATAGC
ATTGCAATTCAACCtgGGTAAATCAAACACGACGACCCTGACGAGCTGGG
AAGCAGAACAACTGAATGCAGCAGTTAAAGATGAGGAAATTGACGTCTTA
TTCACAACAGAACATGTATCGTTCCCTTTATGTTTGATTCTCA
Run BLAST on NCBI

transcript from alignment at scaffold_110:215133..215766-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046458 ID=TCONS_00046458|Name=TCONS_00046458|organism=Clytia hemisphaerica|type=transcript|length=634bp|location=Sequence derived from alignment at scaffold_110:215133..215766- (Clytia hemisphaerica)
ATCGCTTTGGATAAATGGATGTCAGAATATTACTTGTCCGATATCAAGAA
AGCAAACCCGAAAGCTAAAATCCACAAGCACTCAAAACCATTGGATTCTG
GGATAGGTTTCATTACTCACGATGAAAATATATTCAAAATGAAGAAGTTT
TTCCATGAACAAAATGTGGATAACATGATCAGACTGTGGTACGATATAGC
ATTGCAATTCAACCTGGTAAGAAAAATATTTGTTAAAAATGGCCTGGGGG
CCGGTAATAGCAACCATTCATGTGAGTATTTTCGAAAATTGCACAAAAAT
TGGGCTAATACTAGCAAAACTAAAGCAAAAATTGGTGATACATCCACAGA
AAATGAGGGAAATTTGCGTACTGAAAAATGTTTTACTTCTAAAAAGTATA
TCTCTATCACTTCAAAGAAGACCTGATAATTTTGAGACACGCTACAGAAA
GAGCATAATGTTTACCTAAATATGTCCTAAAATCTTAACGTTCATCGTTT
TCCCCAGGGTAAATCAAACACGACGACCCTGACGAGCTGGGAAGCAGAAC
AACTGAATGCAGCAGTTAAAGATGAGGAAATTGACGTCTTATTCACAACA
GAACATGTATCGTTCCCTTTATGTTTGATTCTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029649XLOC_029649Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046458-exon-scaffold_110-1575043694:215551..215766TCONS_00046458-exon-scaffold_110-1575043694:215551..215766Clytia hemisphaericaexon
TCONS_00046458-exon-scaffold_110-1575043694:215133..215259TCONS_00046458-exon-scaffold_110-1575043694:215133..215259Clytia hemisphaericaexon
TCONS_00046458-exon-scaffold_110-1510915933:215551..215766TCONS_00046458-exon-scaffold_110-1510915933:215551..215766Clytia hemisphaericaexon
TCONS_00046458-exon-scaffold_110-1510915933:215133..215259TCONS_00046458-exon-scaffold_110-1510915933:215133..215259Clytia hemisphaericaexon
TCONS_00046458-exon-scaffold_110-1491911889:215551..215766TCONS_00046458-exon-scaffold_110-1491911889:215551..215766Clytia hemisphaericaexon
TCONS_00046458-exon-scaffold_110-1491911889:215133..215259TCONS_00046458-exon-scaffold_110-1491911889:215133..215259Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_110supercontigscaffold_110:215133..215766 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.299773	0.246328	0	0	0	0	0	0.167419	0	0.0282875	0	0	0	0	0	0	0	0	0	0	0	0.280097	15.6851	2.31711	0.363036	0.290148	0.0824924	0.0350794
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046458 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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